Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20christyi_20[genbank_20GCA_5F000349165.1_202013-04-02]
30,369 sequences; 172,658,580 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq28971 174 3e-38
seq24704 149 1e-30
seq9735 134 3e-26
seq734 134 3e-26
>seq28971
Length=24202
Score = 174 bits (192), Expect = 3e-38
Identities = 361/535 (67%), Gaps = 2/535 (0%)
Strand=Plus/Minus
Query 268258 CCACATTGCTTCGACATAGTCCCGCGCATGGCCCCAATCGCGCTTTGCGTCCATGTTCCC 268317
||||||||| ||||| ||||| ||| || |||||||| ||||| | ||| | || ||
Sbjct 2698 CCACATTGCCTCGACGTAGTCTTTCGCGTGCCCCCAATCACGCTTCGAGTCTAGATTGCC 2639
Query 268318 GAGGAACAGGCATTTCTGCTTGCCGAGCTTCACGCGTGCAAGACCGCGAGTGATTTTTCG 268377
|| |||| | | ||||| ||||||| | ||| | ||| || ||||| ||
Sbjct 2638 CAGCTCCAGGTACTCCTGCTGGCCGAGCGAAATCTTTGCCACCGAGCGGGTAATTTTGCG 2579
Query 268378 GGTCACGAACGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGGATGCCGTTGCACGC 268437
|| ||||| |||| || || | || ||| |||||||| |||||||| ||||| ||
Sbjct 2578 CGTGACGAAATTCTCTCCCCGGCGTGGTGACTCATGGTTGAACAGGATGCCATTGCAGGC 2519
Query 268438 GAACATGCCATATGCCTCACGGTAGTTCACGACCGTCCAGTATGCAAACATCTTTGCAAC 268497
|||||| || ||||| || ||||| | || |||| || | ||||||| |||
Sbjct 2518 GAACATATTGTACGCCTCGCGATAGTTTATCACAATCCAATACCCGTACATCTTGGCACA 2459
Query 268498 TGCGTACGGAGAACGTGGATGGAAGGGCGTCGTGATCTTTTGAGGGATTTCTCGGACTTT 268557
|||||||| || || |||| ||| || ||| | || || || | || || ||
Sbjct 2458 CGCGTACGGTGAGCGAGGATAGAACGGAGTCTTCTCGTTCTGGGGCGTCTCCGCCACCTT 2399
Query 268558 GCCAAAGAGCTCGGAGGTCGATGCTTGGTAGAACTTTGTTGTTTTTTCGAGACCGCAGAT 268617
|| | | || || || ||||| |||||||| ||| ||||| | || | |
Sbjct 2398 TCCGTACAATTCTGACGTGGATGCCTGGTAGAAGCGGACTGTCTTTTCCTGGCCAACGGT 2339
Query 268618 TCGGATTGCCTCGAGCAAACGAAGAGTTCCCATGCCATCCACGTCCGCTGTATACTCCGG 268677
|| || || || ||||| || || || || | ||||||| || || ||||| ||
Sbjct 2338 ACGAATGGCATCAAGCAACCGCAGCGTGCCGACCGCATCCACCTCAGCCGTATATTCGCT 2279
Query 268678 CATCTCGAATGACACCTGGACATGGCTCTGGGCGCCCAGGTTATAAACCTCATCCGGTTT 268737
|| ||||| || | || ||||||||||||||| |||| ||||| | || |||
Sbjct 2278 CAGATCGAACGAAATCTTCACATGGCTCTGGGCGGCCAGATTATATATTTCGGACGGGCG 2219
Query 268738 GACCTGCTGCACGATCTTCACGAGGTTCGTTG-AGTCGGTGAGGTCTCCGTAGTG 268791
||||| | ||| ||||| | || || || ||||| | ||| ||||||||
Sbjct 2218 CACCTGGGCAATGATTTTCACCA-GTGCGCTGCTATCGGTCATGTCACCGTAGTG 2165
>seq24704
Length=53625
Score = 149 bits (164), Expect = 1e-30
Identities = 169/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| ||||| || || | |||| || || || |||||||| |||||||| || |||||
Sbjct 37703 CCACCGCGCAGACGAAGCACCAGATGAAGGGTAGACTCTTTCTGGATGTTGTAGTCGGAC 37644
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | |||||| |||||||| || || | || || || || ||
Sbjct 37643 AGCGTGCGTCCATCCTCCAGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCCGGCGGG 37584
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || |||||||| || ||||| ||||| || |||||| || || | | || ||
Sbjct 37583 ATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACC 37524
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | ||| ||||| || ||||||||||| |||||||| ||||||||
Sbjct 37523 TCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 37477
>seq9735
Length=15595
Score = 134 bits (148), Expect = 3e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || ||||| |||| |||| || || || || || || || || || || ||||||
Sbjct 4836 CCACCACGAAGTCGCAGGACCAGATGAAGGGTCGATTCCTTCTGAATATTGTAGTCGGAG 4777
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | |||||| ||||| || || || | || || || || |||
Sbjct 4776 AGAGTGCGACCATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGAGGA 4717
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||||||||| || || ||||| ||||| || |||||| ||||| | | || ||
Sbjct 4716 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCCGAAGGCTCGACC 4657
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | |||||||| || || ||||| || || ||||| ||||||||
Sbjct 4656 TCAAGTGTGATGGTCTTGCCGGTGAGCGTTTTCACGAAAATCTGCAT 4610
>seq734
Length=4884
Score = 134 bits (148), Expect = 3e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || || | |||| || || ||||| || || ||||||||||| || ||
Sbjct 11 CCACCACGCAGACGAAGGACCAGATGGAGGGTGGATTCCTTCTGGATGTTATAGTCCGAC 70
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | |||||||| | |||||| ||||| || || || | || || || |||||
Sbjct 71 AGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGATCTGGTGGG 130
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || ||||| || |||||||| |||||||| ||| || || || | || || ||
Sbjct 131 ATTCCCTCCTTATCCTGAATCTTGGCCTTGACATTCTCAATCGTATCGGATGGCTCAACC 190
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | ||||||||| ||||| || || || || || || ||||||||
Sbjct 191 TCGAGGGTGATGGTCTTTCCGGTCAGAGTTTTCACAAAAATCTGCAT 237
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921272540616680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |