Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20christyi_20[genbank_20GCA_5F000349165.1_202013-04-02] 30,369 sequences; 172,658,580 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq25975 113 5e-20 seq8435 86.0 7e-12 >seq25975 Length=7706 Score = 113 bits (124), Expect = 5e-20 Identities = 420/654 (64%), Gaps = 11/654 (2%) Strand=Plus/Minus Query 106169 GCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTC 106228 ||||| |||||||| || ||||| | | || ||| |||||||| || || | ||| Sbjct 3086 GCCAACTCACAGCTAGCTTCCAGTGCTCCGAAATAGATGGTTTCGAATATTTGTTGGTTC 3027 Query 106229 ATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGA 106288 | || | || || || || | | ||||| || || || |||| || | Sbjct 3026 AGCTTTTGAGCCTCCTCGCTTTCGTACGGATAGCGCATTAAGATGAACGCATCGGCCATT 2967 Query 106289 CCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA--- 106345 || |||||||| | ||| || |||| ||| ||||| || || ||| || ||| Sbjct 2966 CCCTGAACACCTATACCGATGGGTCGGTGGCGCATGTTGGAG---CGCTTAGCCTCCGGG 2910 Query 106346 ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATT 106405 || ||||| | || ||||||| ||| ||||| || || ||||| | || | Sbjct 2909 ACAGGATAGTAGTTGACATCAATGATCTTGTTCAGATTGCGCGTTACTATCTTAGCGACT 2850 Query 106406 TCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCG 106465 || | || || | ||||| | || | |||| || ||| || | | || Sbjct 2849 TCCTTCAGCTTGGTAAAATCATACGTTTTA---TCTTGCTTTACAAACATGTTCAAAGCA 2793 Query 106466 ATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTA 106525 || || |||| |||||| || || || ||||| | ||||| | |||||| || Sbjct 2792 ATCGAGGCCAGATTGCACACCGCTACTTCGTCCTTCGACGAATACTCCACAATTTCGGTG 2733 Query 106526 CACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCA 106585 |||| |||||||| ||||| || || | ||||| || ||||| || ||||| ||| Sbjct 2732 CACAGGTTGGAACATTTAATGGTTCCGACATTCTGCTGATTACTTTTACGATTGCATGCA 2673 Query 106586 TCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCAC 106645 |||||||| |||||||| || ||||| ||| ||| |||| || || || |||| Sbjct 2672 TCCTTGTACAGCATGTATGGTACGCCCGTTTCCACCTGCGACTCGATGATCGCGAACCAC 2613 Query 106646 ACATCGGCGGCTGGTACAATGGCG-TTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAG 106704 | || ||| || || || | || ||||| ||||||| ||||| || Sbjct 2612 AAGTCCTGTGCTTTGAC-CTGTCGAATAAAGCGACCCTCTTTCTCGTACCCCGTGTACAG 2554 Query 106705 GGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAG 106764 || ||||| |||||| || || | ||||| || | || |||||| | || Sbjct 2553 CTTCTCGAACTCTTCACCCCACGTATCTGCCAGACCGGGACAATCGTGTGGACACATCAG 2494 Query 106765 AGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAG 106818 ||| || | |||| || ||||||||||| || || || |||||||| Sbjct 2493 GCTCCACATTTCATTCGCCTCCACACGCTTCATGAACAGATCCGGTATCCACAG 2440 >seq8435 Length=16072 Score = 86.0 bits (94), Expect = 7e-12 Identities = 116/160 (73%), Gaps = 4/160 (3%) Strand=Plus/Minus Query 155044 TATGGTCGTGTTGCACCACGATCCGGTCTCGCTGTGAAGCATGGTATTCAAGTTGGTGCG 155103 ||||| || || |||||||| ||||||||||| ||||| | || | || ||||| Sbjct 11165 TATGGCCGAGTGGCACCACGTTCCGGTCTCGCAGTGAAAAACTTCATCGATGTGGGTGCC 11106 Query 155104 GGTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATCAC--GGAG 155161 || || | ||| |||||| ||| | ||| ||| || || ||||||||| |||| Sbjct 11105 GGCGTCGTCGATGAGGACTATCGCGGTAACGTCGGAGTTGTGCTGTTCAATCACTCGGAG 11046 Query 155162 ACAAAGACTTTGAGGTAAAGAAAGGGGATCGCATCGCACA 155201 | || || || || |||||||| |||||||||||||| Sbjct 11045 GCGAAT--TTCGAAGTGAAGAAAGGCGATCGCATCGCACA 11008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589756835913560