Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20christyi_20[genbank_20GCA_5F000349165.1_202013-04-02] 30,369 sequences; 172,658,580 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq25975 156 5e-33 seq22281 82.4 9e-11 >seq25975 Length=7706 Score = 156 bits (172), Expect = 5e-33 Identities = 1167/1882 (62%), Gaps = 46/1882 (2%) Strand=Plus/Minus Query 46973 TTTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACC 47032 ||| ||||| ||||||| || | ||| || | || || || ||||||||||| || Sbjct 3708 TTTGTCCACCGTAAACTGGATCGCATTTACGGCCGGCTTGGTGCGCAAATAATACATGCC 3649 Query 47033 AGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGG 47092 ||| || ||||| | |||| || |||||||| || || | ||| || | || Sbjct 3648 AGTTTTCAAACCCATTTTCCACCCGTAGAAATGGATCGACGTCAGCTTACCGTAGTTGGG 3589 Query 47093 TTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGC 47152 ||| | | |||||||| | ||||| |||||| ||||| ||||| | ||| ||||| Sbjct 3588 TTCCGCGACGTGAATATTGAACGATTGCGACTGATCGATAAACGCACCGCGATCCGCTGC 3529 Query 47153 CATATCTAAAATAACCCTTTG--TGGTATCTCCCATACTGTTTTATAAATTTGTTTAATG 47210 ||| | | || ||| || ||||||||||| ||||| |||| | ||| Sbjct 3528 CATTTTGATGC--ACGTTTTCACTGAGATCTCCCATACCGTTTTGTAAAGATCGCGAATT 3471 Query 47211 TCTTCTGGGAGATT---AGTATTTTGAATAGATCCTCCgttttctataattttgtttttt 47267 |||| |||| | | | | |||||||| ||||| ||| | ||| | ||| || Sbjct 3470 TCTTGCGGGATAGTCTCAATCTTTTGAATTGATCCATTGTTCGACAGAATCTCGTTCTTC 3411 Query 47268 aattcatttgaccaaagt----tttcgttcagttaatgtttttaaAAGATGAGGATTAAC 47323 | || ||| | | | | | |||| | || | ||||| | || || Sbjct 3410 ATATCGAGATCCCATAATCCCATGTTGGTCAGATCCTGC----AGGAGATGGTGGTTTAC 3355 Query 47324 AATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTAT 47383 | ||||| || || ||||| || | | | |||| || || || || || | Sbjct 3354 CACCTGAAACTCACCCGATAGCACGCGTCTATTGTATACGTTCGACGTGTAGGGCTCGAA 3295 Query 47384 AGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGC-AACTAATA 47442 |||||||| || |||| |||||| || || || || || ||||| | || ||| | Sbjct 3294 CGATTCATTGTTGCCAAGAATTTGGGCTGTCGAAGCCGTCGGCATCGGGGCCAAC--AGC 3237 Query 47443 AGCTATTT-CTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGA 47501 ||| | || | | || | || ||| | ||| | ||| || Sbjct 3236 AGCGAATTGCGGATACCGTGCTTGGCTATTTTTTCCTTCAACTCCGACCAGTTCCACAGC 3177 Query 47502 TCTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCA 47561 || | || | ||||| | || || || || || || ||||| | |||| ||| Sbjct 3176 TCAGTCGGCTCCTTGTTCCACATTTCGTACTGCAGGATGCCCTTACTCACCGGACTACCC 3117 Query 47562 TTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTA 47621 | || |||| || || || | | || | ||||| || ||||||| ||| | Sbjct 3116 TCGTACGTTTCGTACGGTCCATCACGAGCGGCCAACTCACAGCTAGCTTCCAGTGCTCCG 3057 Query 47622 TAATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTG---CTTCT-GATGATTCAAA 47677 |||| || ||||| ||||||| | ||| || || ||| || || | | ||| | Sbjct 3056 AAATAGATGGTTTCGAATATTTGTTGGTTCAGCTT--TTGAGCCTCCTCGCT--TTCGTA 3001 Query 47678 AGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCT 47737 ||||| || | ||| |||| ||| |||||||| ||||| || |||| Sbjct 3000 CGGATAGCGCATTAAGATGAACGCATCGGCCATTCCCTGAACACCTATACCGATGGGTCG 2941 Query 47738 ATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTT 47797 || | || || || ||| || || | ||||| | ||| | ||| || || || Sbjct 2940 GTGGCGCATGTTGGAGCGCTTAGCCTCCGGGACAGGATAGTAGTTGACATCAATGATCTT 2881 Query 47798 ATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAACTTGTT 47857 || ||| | | ||| | | || |||||||| || | || Sbjct 2880 GTTCAGATTGCGCGTTACTATCTTAGCGACTTCCTTCAGCTTGGTAAAATCATACGTTTT 2821 Query 47858 ATTTA---TAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCAT- 47913 || | | |||||| | || | || || || || ||||| || || ||||| || | Sbjct 2820 ATCTTGCTTTACAAACATGTTCAAAGCAATCGAGGCCAGATTGCACACCGCTACTTCGTC 2761 Query 47914 -TTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAA 47972 || || | ||| | | ||||| | || || || |||||| || || || | | Sbjct 2760 CTTCGACGA--ATACTCCACAATTTCGGTGCACAGGTTGGAACATTTAATGGTTCCGACA 2703 Query 47973 TTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTT 48032 || || |||||| | || ||||| |||||||| ||||| | ||| || ||| Sbjct 2702 TTCTGCTGATTACTTTTACGATTGCATGCATCCTTGTACAGCATGTATGGTACGCCCGTT 2643 Query 48033 TCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTTATAACAGCTC---TA 48089 || | ||| || || ||||| | ||| | |||||| |||| || || || Sbjct 2642 TCCACCTGCGACTCGATGATCGCGAACCACA-AGTCCTGTGCTTTG--ACCTGTCGAATA 2586 Query 48090 GCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTA 48149 | || | ||||| || || | |||||| || || || || || || Sbjct 2585 AAGCGACCCTCTTTCTCGTACCCCGTGTACAGCTTCTCGAACTCTTCACCCCACGTATCT 2526 Query 48150 TCTAACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTA 48209 | | || ||||| || | |||||||||| ||| |||| | || | Sbjct 2525 GCCAGACCGGGACAATCGTGTGGACACATCAGGCTCCACATTTCATTCGCCTCCACACGC 2466 Query 48210 GTCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCA 48269 |||| || | ||| |||||||| ||||| || | || | | | | ||||| Sbjct 2465 TTCATGAACAGATCCGGTATCCACAGAGCGTAGAACATGTCGCGGGCACGGACCTCTTCC 2406 Query 48270 TTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAA 48329 |||||| | || | || || || ||||| || | || |||| ||||||| ||||| | | Sbjct 2405 TTGCCAGTGTTTTTCTTTAGATCGAGAAACTCGAATACATCACCATGCCACGGTTCCAGA 2346 Query 48330 TATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTG 48389 || || || | | | || || | ||| || || || ||||| | || | || |||||| Sbjct 2345 TAGATGGCGAATGCTCCAGGCCTTTTGTTGCCGCCCTGATCCACGTACCGTGCCGTATTG 2286 Query 48390 TTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAA 48449 || || || | | ||| || || | || ||||| ||||| || || || || || || Sbjct 2285 TTGTACACGCGCAGCATCGGCACCAATCCGTTTGAAATACCGTTTGTGCCGGAGATGTAT 2226 Query 48450 CTTCCACTAGCTCTTAT--ATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATA 48507 |||| | || | || | | | || | || || ||||| ||| || || | Sbjct 2225 GTTCCCTTCGCGCGGATGCAGTGCACGTTCAGC--CCAATGCCACCGGCCGACTTTGAAA 2168 Query 48508 TTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTA 48567 | || ||||| | || || ||||| ||||| || || || |||||||| ||| | | Sbjct 2167 TCAGCGCACATTGCTTCAGAGTATCGTAAATACCCTCAATGCTATCATCAGACATGGTCA 2108 Query 48568 ATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATG 48627 |||||||| ||| | || || | || | | ||| | || || || | Sbjct 2107 GCAGAAAACAGGAAGAGAGCTGAGGCCGCTGCGTAGCCGCTGCAAACATGGTCGGTGAGG 2048 Query 48628 CATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCC- 48686 | || |||| | || || | || ||||| ||||| || | | ||| || | Sbjct 2047 CGTGGGTAAAGTAGCGTTCAGACAGCAGATTATACGTTTCGATCGCTGCATCGATGTTTT 1988 Query 48687 CATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTG 48746 || | || || || |||| || ||||| | ||||| || |||| ||||||||||| Sbjct 1987 CACCG-TGGATGCCGATAGCGACGCGCATCAGCATATGCTGTGGTCGCTCAACAATTTTA 1929 Query 48747 TTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAA 48806 ||||| || | | |||||| ||||||||||||||| || ||||||||||| | Sbjct 1928 CCCTTTATCTTGAGCAAGTATGATCGTTCCAATGTTTTAAAGCCGAAATAGTTGTACCCA 1869 Query 48807 AAGTCGTTATCATTAATAATTG 48828 |||||| ||| | |||||||| Sbjct 1868 AAGTCGCGATCGTAAATAATTG 1847 >seq22281 Length=11977 Score = 82.4 bits (90), Expect = 9e-11 Identities = 176/263 (67%), Gaps = 0/263 (0%) Strand=Plus/Plus Query 18943 AGATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAAT 19002 |||| || ||||||| || || || || || || || || ||||| | |||| Sbjct 3042 AGATACTTGAACATCAGGCAGGCGAAGTCGCAGTGCAGCCCTTCGTCGCGCGAAATCAGC 3101 Query 19003 TCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCA 19062 || || || || || | || |||||||| || | || || | |||||| || ||||| Sbjct 3102 TCGTTCGAGAAGGTGAGTCCCGGCATCAGGCCACGCTTCTTGAGCCAGAAAATGGAAGCG 3161 Query 19063 AATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAA 19122 || || ||||| |||||||| || || || ||||| || | | || || | Sbjct 3162 AAGCTGCCGCTGAAGAAGATACCTTCGACGGCGGCGAAAGCCACGACACGCTCACCGAAG 3221 Query 19123 CTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGC 19182 |||| | || | ||||| || || ||||| ||||||||||| || || || ||| Sbjct 3222 TTAGCCTTCTTGCTGGAGATCCAGTTTAGCGCCCAGTCAGCCTTCTTCTTCACGCACGGC 3281 Query 19183 ATTGTCTCTATAGAATTAAATAG 19205 | || || || | |||||| || Sbjct 3282 AGCGTTTCGATGGCATTAAACAG 3304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561895416473160