Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20christyi_20[genbank_20GCA_5F000349165.1_202013-04-02]
30,369 sequences; 172,658,580 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq25975 156 5e-33
seq22281 82.4 9e-11
>seq25975
Length=7706
Score = 156 bits (172), Expect = 5e-33
Identities = 1167/1882 (62%), Gaps = 46/1882 (2%)
Strand=Plus/Minus
Query 46973 TTTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACC 47032
||| ||||| ||||||| || | ||| || | || || || ||||||||||| ||
Sbjct 3708 TTTGTCCACCGTAAACTGGATCGCATTTACGGCCGGCTTGGTGCGCAAATAATACATGCC 3649
Query 47033 AGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGG 47092
||| || ||||| | |||| || |||||||| || || | ||| || | ||
Sbjct 3648 AGTTTTCAAACCCATTTTCCACCCGTAGAAATGGATCGACGTCAGCTTACCGTAGTTGGG 3589
Query 47093 TTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGC 47152
||| | | |||||||| | ||||| |||||| ||||| ||||| | ||| |||||
Sbjct 3588 TTCCGCGACGTGAATATTGAACGATTGCGACTGATCGATAAACGCACCGCGATCCGCTGC 3529
Query 47153 CATATCTAAAATAACCCTTTG--TGGTATCTCCCATACTGTTTTATAAATTTGTTTAATG 47210
||| | | || ||| || ||||||||||| ||||| |||| | |||
Sbjct 3528 CATTTTGATGC--ACGTTTTCACTGAGATCTCCCATACCGTTTTGTAAAGATCGCGAATT 3471
Query 47211 TCTTCTGGGAGATT---AGTATTTTGAATAGATCCTCCgttttctataattttgtttttt 47267
|||| |||| | | | | |||||||| ||||| ||| | ||| | ||| ||
Sbjct 3470 TCTTGCGGGATAGTCTCAATCTTTTGAATTGATCCATTGTTCGACAGAATCTCGTTCTTC 3411
Query 47268 aattcatttgaccaaagt----tttcgttcagttaatgtttttaaAAGATGAGGATTAAC 47323
| || ||| | | | | | |||| | || | ||||| | || ||
Sbjct 3410 ATATCGAGATCCCATAATCCCATGTTGGTCAGATCCTGC----AGGAGATGGTGGTTTAC 3355
Query 47324 AATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTAT 47383
| ||||| || || ||||| || | | | |||| || || || || || |
Sbjct 3354 CACCTGAAACTCACCCGATAGCACGCGTCTATTGTATACGTTCGACGTGTAGGGCTCGAA 3295
Query 47384 AGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGC-AACTAATA 47442
|||||||| || |||| |||||| || || || || || ||||| | || ||| |
Sbjct 3294 CGATTCATTGTTGCCAAGAATTTGGGCTGTCGAAGCCGTCGGCATCGGGGCCAAC--AGC 3237
Query 47443 AGCTATTT-CTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGA 47501
||| | || | | || | || ||| | ||| | ||| ||
Sbjct 3236 AGCGAATTGCGGATACCGTGCTTGGCTATTTTTTCCTTCAACTCCGACCAGTTCCACAGC 3177
Query 47502 TCTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCA 47561
|| | || | ||||| | || || || || || || ||||| | |||| |||
Sbjct 3176 TCAGTCGGCTCCTTGTTCCACATTTCGTACTGCAGGATGCCCTTACTCACCGGACTACCC 3117
Query 47562 TTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTA 47621
| || |||| || || || | | || | ||||| || ||||||| ||| |
Sbjct 3116 TCGTACGTTTCGTACGGTCCATCACGAGCGGCCAACTCACAGCTAGCTTCCAGTGCTCCG 3057
Query 47622 TAATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTG---CTTCT-GATGATTCAAA 47677
|||| || ||||| ||||||| | ||| || || ||| || || | | ||| |
Sbjct 3056 AAATAGATGGTTTCGAATATTTGTTGGTTCAGCTT--TTGAGCCTCCTCGCT--TTCGTA 3001
Query 47678 AGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCT 47737
||||| || | ||| |||| ||| |||||||| ||||| || ||||
Sbjct 3000 CGGATAGCGCATTAAGATGAACGCATCGGCCATTCCCTGAACACCTATACCGATGGGTCG 2941
Query 47738 ATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTT 47797
|| | || || || ||| || || | ||||| | ||| | ||| || || ||
Sbjct 2940 GTGGCGCATGTTGGAGCGCTTAGCCTCCGGGACAGGATAGTAGTTGACATCAATGATCTT 2881
Query 47798 ATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAACTTGTT 47857
|| ||| | | ||| | | || |||||||| || | ||
Sbjct 2880 GTTCAGATTGCGCGTTACTATCTTAGCGACTTCCTTCAGCTTGGTAAAATCATACGTTTT 2821
Query 47858 ATTTA---TAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCAT- 47913
|| | | |||||| | || | || || || || ||||| || || ||||| || |
Sbjct 2820 ATCTTGCTTTACAAACATGTTCAAAGCAATCGAGGCCAGATTGCACACCGCTACTTCGTC 2761
Query 47914 -TTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAA 47972
|| || | ||| | | ||||| | || || || |||||| || || || | |
Sbjct 2760 CTTCGACGA--ATACTCCACAATTTCGGTGCACAGGTTGGAACATTTAATGGTTCCGACA 2703
Query 47973 TTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTT 48032
|| || |||||| | || ||||| |||||||| ||||| | ||| || |||
Sbjct 2702 TTCTGCTGATTACTTTTACGATTGCATGCATCCTTGTACAGCATGTATGGTACGCCCGTT 2643
Query 48033 TCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTTATAACAGCTC---TA 48089
|| | ||| || || ||||| | ||| | |||||| |||| || || ||
Sbjct 2642 TCCACCTGCGACTCGATGATCGCGAACCACA-AGTCCTGTGCTTTG--ACCTGTCGAATA 2586
Query 48090 GCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTA 48149
| || | ||||| || || | |||||| || || || || || ||
Sbjct 2585 AAGCGACCCTCTTTCTCGTACCCCGTGTACAGCTTCTCGAACTCTTCACCCCACGTATCT 2526
Query 48150 TCTAACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTA 48209
| | || ||||| || | |||||||||| ||| |||| | || |
Sbjct 2525 GCCAGACCGGGACAATCGTGTGGACACATCAGGCTCCACATTTCATTCGCCTCCACACGC 2466
Query 48210 GTCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCA 48269
|||| || | ||| |||||||| ||||| || | || | | | | |||||
Sbjct 2465 TTCATGAACAGATCCGGTATCCACAGAGCGTAGAACATGTCGCGGGCACGGACCTCTTCC 2406
Query 48270 TTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAA 48329
|||||| | || | || || || ||||| || | || |||| ||||||| ||||| | |
Sbjct 2405 TTGCCAGTGTTTTTCTTTAGATCGAGAAACTCGAATACATCACCATGCCACGGTTCCAGA 2346
Query 48330 TATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTG 48389
|| || || | | | || || | ||| || || || ||||| | || | || ||||||
Sbjct 2345 TAGATGGCGAATGCTCCAGGCCTTTTGTTGCCGCCCTGATCCACGTACCGTGCCGTATTG 2286
Query 48390 TTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAA 48449
|| || || | | ||| || || | || ||||| ||||| || || || || || ||
Sbjct 2285 TTGTACACGCGCAGCATCGGCACCAATCCGTTTGAAATACCGTTTGTGCCGGAGATGTAT 2226
Query 48450 CTTCCACTAGCTCTTAT--ATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATA 48507
|||| | || | || | | | || | || || ||||| ||| || || |
Sbjct 2225 GTTCCCTTCGCGCGGATGCAGTGCACGTTCAGC--CCAATGCCACCGGCCGACTTTGAAA 2168
Query 48508 TTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTA 48567
| || ||||| | || || ||||| ||||| || || || |||||||| ||| | |
Sbjct 2167 TCAGCGCACATTGCTTCAGAGTATCGTAAATACCCTCAATGCTATCATCAGACATGGTCA 2108
Query 48568 ATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATG 48627
|||||||| ||| | || || | || | | ||| | || || || |
Sbjct 2107 GCAGAAAACAGGAAGAGAGCTGAGGCCGCTGCGTAGCCGCTGCAAACATGGTCGGTGAGG 2048
Query 48628 CATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCC- 48686
| || |||| | || || | || ||||| ||||| || | | ||| || |
Sbjct 2047 CGTGGGTAAAGTAGCGTTCAGACAGCAGATTATACGTTTCGATCGCTGCATCGATGTTTT 1988
Query 48687 CATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTG 48746
|| | || || || |||| || ||||| | ||||| || |||| |||||||||||
Sbjct 1987 CACCG-TGGATGCCGATAGCGACGCGCATCAGCATATGCTGTGGTCGCTCAACAATTTTA 1929
Query 48747 TTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAA 48806
||||| || | | |||||| ||||||||||||||| || ||||||||||| |
Sbjct 1928 CCCTTTATCTTGAGCAAGTATGATCGTTCCAATGTTTTAAAGCCGAAATAGTTGTACCCA 1869
Query 48807 AAGTCGTTATCATTAATAATTG 48828
|||||| ||| | ||||||||
Sbjct 1868 AAGTCGCGATCGTAAATAATTG 1847
>seq22281
Length=11977
Score = 82.4 bits (90), Expect = 9e-11
Identities = 176/263 (67%), Gaps = 0/263 (0%)
Strand=Plus/Plus
Query 18943 AGATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAAT 19002
|||| || ||||||| || || || || || || || || ||||| | ||||
Sbjct 3042 AGATACTTGAACATCAGGCAGGCGAAGTCGCAGTGCAGCCCTTCGTCGCGCGAAATCAGC 3101
Query 19003 TCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCA 19062
|| || || || || | || |||||||| || | || || | |||||| || |||||
Sbjct 3102 TCGTTCGAGAAGGTGAGTCCCGGCATCAGGCCACGCTTCTTGAGCCAGAAAATGGAAGCG 3161
Query 19063 AATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAA 19122
|| || ||||| |||||||| || || || ||||| || | | || || |
Sbjct 3162 AAGCTGCCGCTGAAGAAGATACCTTCGACGGCGGCGAAAGCCACGACACGCTCACCGAAG 3221
Query 19123 CTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGC 19182
|||| | || | ||||| || || ||||| ||||||||||| || || || |||
Sbjct 3222 TTAGCCTTCTTGCTGGAGATCCAGTTTAGCGCCCAGTCAGCCTTCTTCTTCACGCACGGC 3281
Query 19183 ATTGTCTCTATAGAATTAAATAG 19205
| || || || | |||||| ||
Sbjct 3282 AGCGTTTCGATGGCATTAAACAG 3304
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 561895416473160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |