Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20christyi_20[genbank_20GCA_5F000349165.1_202013-04-02] 30,369 sequences; 172,658,580 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq23923 113 4e-19 seq29242 89.7 4e-12 >seq23923 Length=9809 Score = 113 bits (124), Expect = 4e-19 Identities = 125/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 930664 TTGATTTTTCTTCACCAAATATTGCCAAAGAAATGCATATTGGACATTTGCGTTCTACCA 930723 ||||||||||||| || ||| | || |||||||||||| | || ||||| ||||| |||| Sbjct 1903 TTGATTTTTCTTCGCCTAATGTAGCGAAAGAAATGCATGTCGGTCATTTACGTTCAACCA 1962 Query 930724 TTATTGGAGAATCTTTATGTAGATTATATGAATATTGTGGAAGTAAAGTTCATCGAGTCA 930783 | ||||| || || | || |||| | || | | || | | || | |||| ||| Sbjct 1963 TCATTGGCGATTCAATTTGCCGATTTTTGGAGTTTCTCGGGCATGATGTACTTCGAATCA 2022 Query 930784 ATCATATTGGTGATTGGGGAACACAATTTGGTATGTTAATTGCTTAT 930830 | || || || || |||||||| || |||||||||||||||||| || Sbjct 2023 ACCACATCGGCGACTGGGGAACGCAGTTTGGTATGTTAATTGCTCAT 2069 >seq29242 Length=5648 Score = 89.7 bits (98), Expect = 4e-12 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 ||||| || || ||||| ||||| ||| || ||| || || || | || || | Sbjct 5425 AGACGAAGAACCAGATGGAGGGTGGATTCCTTCTGAATGTTATAGTCCGACAGGGTGCGG 5484 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 |||||| || || ||||||||||| || || | |||||||| || || ||||| || Sbjct 5485 CCATCTTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGATCTGGTGGGATTCCCTCC 5544 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTA 563436 ||||| ||||| || || || |||||| ||||| | | | |||||||| Sbjct 5545 TTATCCTGAATCTTGGCCTTGACATTCTCAATCGTATCGGATGGCTCAACCTCGAGAGTG 5604 Query 563437 ACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 | || || || || || ||||| || ||||| |||||| Sbjct 5605 ATGGTCTTTCCGGTCAGCGTTTTCACAAAAATCTGCATA 5643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4027689950315810