Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20christyi_20[genbank_20GCA_5F000349165.1_202013-04-02] 30,369 sequences; 172,658,580 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq9735 141 7e-29 seq14204 127 2e-24 seq734 105 5e-18 seq3879 102 6e-17 seq24704 98.7 8e-16 >seq9735 Length=15595 Score = 141 bits (156), Expect = 7e-29 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||||||||| ||||| || || |||||||| |||| || ||| | |||| |||| || Sbjct 4813 ATGAAGGGTCGATTCCTTCTGAATATTGTAGTCGGAGAGAGTGCGACCATCCTCCAGCTG 4754 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| || ||||| |||| |||||| ||||| || ||||||||||| ||||| || || || Sbjct 4753 CTTGCCGGCAAAGATCAGACGCTGCTGATCTGGAGGAATGCCTTCCTTATCCTGGATCTT 4694 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || ||| | || | ||||| || | || || ||||| |||| || |||||||| Sbjct 4693 GGCCTTCACATTCTCGATCGTGTCCGAAGGCTCGACCTCAAGTGTGATGGTCTTGCCGGT 4634 Query 101446 TAAAGTTTTTACAAATATCTGCATGGTTACGCGAAG 101481 | ||||| || || ||||||||| || | |||| Sbjct 4633 GAGCGTTTTCACGAAAATCTGCATGTTTCTGTGAAG 4598 >seq14204 Length=1823 Score = 127 bits (140), Expect = 2e-24 Identities = 219/316 (69%), Gaps = 4/316 (1%) Strand=Plus/Plus Query 13652 TTGAATTTTCGTTTACAACCTTCAAAATTCATGTGTCGTATTTTACCATAGATTGGTCGC 13711 || ||||| || ||||| || ||| | ||||||| || || || ||| ||||| ||| Sbjct 135 TTAAATTTACGCTTACATCCGTCATAGTTCATGTACCGAATCTTTCCAAAGATTTCACGC 194 Query 13712 TCCATCCAGGCACGATCGTGAGTTCCGCATATTGACCACATGCAACCGGCATAACCGTTG 13771 ||| |||| | |||||||| | ||| || ||||||||||||||| | || ||||| Sbjct 195 TCCTTCCAACCCTGATCGTGAATGCCGGCGATCGACCACATGCAACCGACGTACCCGTTC 254 Query 13772 GGATCGCGTCCATCCAAACTGTATTTGTCGTTGAAATATATGGCGTTGATTAAA--GCCA 13829 |||||||| ||||||| |||||| ||||| | ||| ||||| || | || || Sbjct 255 GGATCGCGCCCATCCAGACTGTAGCGATCGTTCAGATAGATGGC--TGTCTCAAGCGCTT 312 Query 13830 CTGTAGGCGAAATAGACCATTCTAATAtttttttAGCCCAATATATTCTCATATATCCGT 13889 | ||||| | | ||| || | || ||||| ||||| || || | || | |||| Sbjct 313 CCTCGGGCGATTTCGTCCACTCCAGGATCTTTTTGGCCCAGTACATCCGCAGGAAGCCGT 372 Query 13890 GCATTTTGCCTTGCGTTTTAAGCTGTGTCTGAGCAGCGTTCCACAATATGTCATGAGTTT 13949 |||| ||||| | | | | ||| ||| || | |||||||| |||||| |||| Sbjct 373 GCATCTTGCCCTCCTTCACCATCTGCAGCTGGGCTGAGTTCCACAGATCGTCATGCGTTT 432 Query 13950 CGGAATTTTCTAATTC 13965 || |||| | ||| Sbjct 433 TGGCCGTTTCCAGTTC 448 >seq734 Length=4884 Score = 105 bits (116), Expect = 5e-18 Identities = 144/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 101273 GTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCT 101332 || ||| | | ||| ||||||||||||| ||| | | |||| |||| |||||||| Sbjct 2647 GTCGATCCATGTTGGATATTGTAATCGGAGATGATCCGACCATCATCCAGCTGCTTACCG 2706 Query 101333 GCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTT 101392 ||||| || | ||||| ||||| || | ||| ||||| | || | ||||||||| Sbjct 2707 GCAAAGATAATTCGCTGCTGATCCGGGGCAATTCCTTCACGTTGTT--CTATTTTGTTTT 2764 Query 101393 ACAATTTCTACA--GTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAG 101450 | | | ||| || || |||| ||| |||||||||| ||| || || ||||| | Sbjct 2765 TAATGTCCAACACCGTTTCCGACGCGATCACCTCAAGAGTGATCGTCTTTCCAGTTAACG 2824 Query 101451 TTTTTACAAATATCTGCAT 101469 |||||||||| |||||||| Sbjct 2825 TTTTTACAAAGATCTGCAT 2843 >seq3879 Length=3897 Score = 102 bits (112), Expect = 6e-17 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 101264 AAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAAT 101323 || || | ||| || || || || || |||||||||| | ||| | |||| |||| Sbjct 3896 AAGTGCAAGGTCGACTCCTTCTGGATGTTGTAATCGGACAAAGTACGTCCATCCTCCAGC 3837 Query 101324 TGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATT 101383 |||||||| || || ||||||||||| ||||| || |||||||| || || || || || Sbjct 3836 TGCTTACCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGGATC 3777 Query 101384 TTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCG 101443 || || || | || | ||||| || | || || || | ||||| || ||||| Sbjct 3776 TTGGCCTTCACGTTCTCGATCGTGTCCGATGGCTCGACCTCCAAAGTGATGGTCTTGCCA 3717 Query 101444 GTTAAAGTTTTTACAAATATCTGCAT 101469 || | ||||| || || |||||||| Sbjct 3716 GTCAGCGTTTTCACGAAGATCTGCAT 3691 >seq24704 Length=53625 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 |||||||||||| ||||| || || ||||| |||| | || | |||| |||| || Sbjct 37680 ATGAAGGGTAGACTCTTTCTGGATGTTGTAGTCGGACAGCGTGCGTCCATCCTCCAGCTG 37621 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 |||||| || || |||| |||||| ||||| ||||| || || || || || || || || Sbjct 37620 CTTACCGGCGAAGATCAGACGCTGCTGATCCGGCGGGATTCCCTCCTTGTCCTGGATCTT 37561 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || ||| | || | || || || | || || ||||| || | || || || || Sbjct 37560 CGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATGGTCTTACCCGT 37501 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 | ||||| || || |||||||| Sbjct 37500 GAGGGTTTTGACGAAGATCTGCAT 37477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396131728571733