Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20christyi_20[genbank_20GCA_5F000349165.1_202013-04-02]
30,369 sequences; 172,658,580 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq9735 141 7e-29
seq14204 127 2e-24
seq734 105 5e-18
seq3879 102 6e-17
seq24704 98.7 8e-16
>seq9735
Length=15595
Score = 141 bits (156), Expect = 7e-29
Identities = 161/216 (75%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325
||||||||| ||||| || || |||||||| |||| || ||| | |||| |||| ||
Sbjct 4813 ATGAAGGGTCGATTCCTTCTGAATATTGTAGTCGGAGAGAGTGCGACCATCCTCCAGCTG 4754
Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385
||| || ||||| |||| |||||| ||||| || ||||||||||| ||||| || || ||
Sbjct 4753 CTTGCCGGCAAAGATCAGACGCTGCTGATCTGGAGGAATGCCTTCCTTATCCTGGATCTT 4694
Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445
|| ||| | || | ||||| || | || || ||||| |||| || ||||||||
Sbjct 4693 GGCCTTCACATTCTCGATCGTGTCCGAAGGCTCGACCTCAAGTGTGATGGTCTTGCCGGT 4634
Query 101446 TAAAGTTTTTACAAATATCTGCATGGTTACGCGAAG 101481
| ||||| || || ||||||||| || | ||||
Sbjct 4633 GAGCGTTTTCACGAAAATCTGCATGTTTCTGTGAAG 4598
>seq14204
Length=1823
Score = 127 bits (140), Expect = 2e-24
Identities = 219/316 (69%), Gaps = 4/316 (1%)
Strand=Plus/Plus
Query 13652 TTGAATTTTCGTTTACAACCTTCAAAATTCATGTGTCGTATTTTACCATAGATTGGTCGC 13711
|| ||||| || ||||| || ||| | ||||||| || || || ||| ||||| |||
Sbjct 135 TTAAATTTACGCTTACATCCGTCATAGTTCATGTACCGAATCTTTCCAAAGATTTCACGC 194
Query 13712 TCCATCCAGGCACGATCGTGAGTTCCGCATATTGACCACATGCAACCGGCATAACCGTTG 13771
||| |||| | |||||||| | ||| || ||||||||||||||| | || |||||
Sbjct 195 TCCTTCCAACCCTGATCGTGAATGCCGGCGATCGACCACATGCAACCGACGTACCCGTTC 254
Query 13772 GGATCGCGTCCATCCAAACTGTATTTGTCGTTGAAATATATGGCGTTGATTAAA--GCCA 13829
|||||||| ||||||| |||||| ||||| | ||| ||||| || | || ||
Sbjct 255 GGATCGCGCCCATCCAGACTGTAGCGATCGTTCAGATAGATGGC--TGTCTCAAGCGCTT 312
Query 13830 CTGTAGGCGAAATAGACCATTCTAATAtttttttAGCCCAATATATTCTCATATATCCGT 13889
| ||||| | | ||| || | || ||||| ||||| || || | || | ||||
Sbjct 313 CCTCGGGCGATTTCGTCCACTCCAGGATCTTTTTGGCCCAGTACATCCGCAGGAAGCCGT 372
Query 13890 GCATTTTGCCTTGCGTTTTAAGCTGTGTCTGAGCAGCGTTCCACAATATGTCATGAGTTT 13949
|||| ||||| | | | | ||| ||| || | |||||||| |||||| ||||
Sbjct 373 GCATCTTGCCCTCCTTCACCATCTGCAGCTGGGCTGAGTTCCACAGATCGTCATGCGTTT 432
Query 13950 CGGAATTTTCTAATTC 13965
|| |||| | |||
Sbjct 433 TGGCCGTTTCCAGTTC 448
>seq734
Length=4884
Score = 105 bits (116), Expect = 5e-18
Identities = 144/199 (72%), Gaps = 4/199 (2%)
Strand=Plus/Plus
Query 101273 GTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCT 101332
|| ||| | | ||| ||||||||||||| ||| | | |||| |||| ||||||||
Sbjct 2647 GTCGATCCATGTTGGATATTGTAATCGGAGATGATCCGACCATCATCCAGCTGCTTACCG 2706
Query 101333 GCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTT 101392
||||| || | ||||| ||||| || | ||| ||||| | || | |||||||||
Sbjct 2707 GCAAAGATAATTCGCTGCTGATCCGGGGCAATTCCTTCACGTTGTT--CTATTTTGTTTT 2764
Query 101393 ACAATTTCTACA--GTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAG 101450
| | | ||| || || |||| ||| |||||||||| ||| || || ||||| |
Sbjct 2765 TAATGTCCAACACCGTTTCCGACGCGATCACCTCAAGAGTGATCGTCTTTCCAGTTAACG 2824
Query 101451 TTTTTACAAATATCTGCAT 101469
|||||||||| ||||||||
Sbjct 2825 TTTTTACAAAGATCTGCAT 2843
>seq3879
Length=3897
Score = 102 bits (112), Expect = 6e-17
Identities = 146/206 (71%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 101264 AAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAAT 101323
|| || | ||| || || || || || |||||||||| | ||| | |||| ||||
Sbjct 3896 AAGTGCAAGGTCGACTCCTTCTGGATGTTGTAATCGGACAAAGTACGTCCATCCTCCAGC 3837
Query 101324 TGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATT 101383
|||||||| || || ||||||||||| ||||| || |||||||| || || || || ||
Sbjct 3836 TGCTTACCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGGATC 3777
Query 101384 TTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCG 101443
|| || || | || | ||||| || | || || || | ||||| || |||||
Sbjct 3776 TTGGCCTTCACGTTCTCGATCGTGTCCGATGGCTCGACCTCCAAAGTGATGGTCTTGCCA 3717
Query 101444 GTTAAAGTTTTTACAAATATCTGCAT 101469
|| | ||||| || || ||||||||
Sbjct 3716 GTCAGCGTTTTCACGAAGATCTGCAT 3691
>seq24704
Length=53625
Score = 98.7 bits (108), Expect = 8e-16
Identities = 144/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325
|||||||||||| ||||| || || ||||| |||| | || | |||| |||| ||
Sbjct 37680 ATGAAGGGTAGACTCTTTCTGGATGTTGTAGTCGGACAGCGTGCGTCCATCCTCCAGCTG 37621
Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385
|||||| || || |||| |||||| ||||| ||||| || || || || || || || ||
Sbjct 37620 CTTACCGGCGAAGATCAGACGCTGCTGATCCGGCGGGATTCCCTCCTTGTCCTGGATCTT 37561
Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445
|| ||| | || | || || || | || || ||||| || | || || || ||
Sbjct 37560 CGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATGGTCTTACCCGT 37501
Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469
| ||||| || || ||||||||
Sbjct 37500 GAGGGTTTTGACGAAGATCTGCAT 37477
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396131728571733
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |