Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20christyi_20[genbank_20GCA_5F000349165.1_202013-04-02] 30,369 sequences; 172,658,580 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq8435 86.0 7e-12 seq28971 84.2 3e-11 >seq8435 Length=16072 Score = 86.0 bits (94), Expect = 7e-12 Identities = 116/160 (73%), Gaps = 4/160 (3%) Strand=Plus/Plus Query 27874 TGTGCGATGCGATCCCCTTTCTTTACCTCAAAGTCTTTGTCTCC--GTGATTGAAGAGAA 27931 |||||||||||||| |||||||| || || || || | |||| ||||||||| || | Sbjct 11008 TGTGCGATGCGATCGCCTTTCTTCACTTCGAA--ATTCGCCTCCGAGTGATTGAACAGCA 11065 Query 27932 CGACTTTGACTTCACCTGTATAGTCGGGATCAATAACACCCGCACCAACTTGAATACCAT 27991 | ||| ||| | ||| |||||| ||| | || || ||||| || | || | Sbjct 11066 CAACTCCGACGTTACCGCGATAGTCCTCATCGACGACGCCGGCACCCACATCGATGAAGT 11125 Query 27992 GCTTCACAGCGAGACCGGATCGTGGTGCAACACGACCATA 28031 ||||| ||||||||||| |||||||| || || ||||| Sbjct 11126 TTTTCACTGCGAGACCGGAACGTGGTGCCACTCGGCCATA 11165 >seq28971 Length=24202 Score = 84.2 bits (92), Expect = 3e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 177559 TCAACAAACTGCCTCACAGAGTGTGTCTCCCCCGTCGCGACAACATATTCATCAGCCTCT 177618 || ||||| | |||||| |||||||| || |||||||| | ||| | || || | || | Sbjct 2775 TCCACAAATTCCCTCACCGAGTGTGTTTCACCCGTCGCAATAACGAAATCTTCCGGCTGT 2716 Query 177619 TCTTGTTGAAGCATGAGCCACATGGCTTCAACATAGTCCTTGGCATGACCCCAGTC 177674 || || || | |||||||||||| || || || ||||| || || || ||||| || Sbjct 2715 TCCTGCTGCATCATGAGCCACATTGCCTCGACGTAGTCTTTCGCGTGCCCCCAATC 2660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596343134722720