Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20christyi_20[genbank_20GCA_5F000349165.1_202013-04-02] 30,369 sequences; 172,658,580 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq29242 113 3e-20 seq24704 105 5e-18 seq734 96.9 3e-15 >seq29242 Length=5648 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| || | || ||| || |||| ||| || |||||||| || ||||||||||| |||| Sbjct 5415 TCCACCGCGCAGACGAAGAACCAGATGGAGGGTGGATTCCTTCTGAATGTTATAGTCCGA 5474 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | |||||| ||| || || || || || ||| | |||| | |||||||| || || Sbjct 5475 CAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGATCTGGTGG 5534 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 || ||||| || || || ||| || | |||||| | || | || || || | || | Sbjct 5535 GATTCCCTCCTTATCCTG-AATCTTGGCCTTGACATTCTCAATCGTATCGGATGGCTCAA 5593 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || ||||| || || || || || | ||||| ||||| |||||||| Sbjct 5594 CCTCGAGAGTGATGGTCTTTCCGGTCAGCGTTTTCACAAAAATCTGCAT 5642 >seq24704 Length=53625 Score = 105 bits (116), Expect = 5e-18 Identities = 168/241 (70%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||| ||||||| |||||| || || ||||| || ||||| || || | Sbjct 37703 CCACCGCGCAGACGAAGCACCAGATGAAGGGTAGACTCTTTCTGGATGTTGTAGTCGGAC 37644 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| ||| || || || || || || | |||| | |||||||||||||| Sbjct 37643 AGCGTGCGTCCATCCTCCAGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCCGGCGGG 37584 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| ||||| || | || || ||| | || | || || || | || || Sbjct 37583 ATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACC 37524 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTAAAACGTATG 29799 ||||| || || || || || || | |||||| || || |||||||| || || ||| || Sbjct 37523 TCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCTTGAACCGTCTG 37464 Query 29800 C 29800 | Sbjct 37463 C 37463 >seq734 Length=4884 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||| |||| || ||||||| ||| | ||| ||| | | ||| || || ||||| | Sbjct 2617 CCACCCTTCAACCGAAGCACCAGATGCATCGTCGATCCATGTTGGATATTGTAATCGGAG 2676 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 ||| | ||| |||||| || || || || ||| | || | || ||||||||||| | | Sbjct 2677 ATGATCCGACCATCATCCAGCTGCTTACCGGCAAAGATAATTCGCTGCTGATCCGGGGCA 2736 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACA--GTGTCAGA-AAGTTCT 29736 || || || | || || |||||||| | | | ||| || || || | || Sbjct 2737 ATTCCTTCACGTTGTTCTA--TTTTGTTTTTAATGTCCAACACCGTTTCCGACGCGATC- 2793 Query 29737 ACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || |||||||| || || || |||||||| ||||| ||||| |||||||| Sbjct 2794 ACCTCAAGAGTGATCGTCTTTCCAGTTAACGTTTTTACAAAGATCTGCAT 2843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385076621827029