Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20christyi_20[genbank_20GCA_5F000349165.1_202013-04-02]
30,369 sequences; 172,658,580 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq29242 113 3e-20
seq24704 105 5e-18
seq734 96.9 3e-15
>seq29242
Length=5648
Score = 113 bits (124), Expect = 3e-20
Identities = 164/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618
||| || | || ||| || |||| ||| || |||||||| || ||||||||||| ||||
Sbjct 5415 TCCACCGCGCAGACGAAGAACCAGATGGAGGGTGGATTCCTTCTGAATGTTATAGTCCGA 5474
Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678
| |||||| ||| || || || || || ||| | |||| | |||||||| || ||
Sbjct 5475 CAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGATCTGGTGG 5534
Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737
|| ||||| || || || ||| || | |||||| | || | || || || | || |
Sbjct 5535 GATTCCCTCCTTATCCTG-AATCTTGGCCTTGACATTCTCAATCGTATCGGATGGCTCAA 5593
Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
| || ||||| || || || || || | ||||| ||||| ||||||||
Sbjct 5594 CCTCGAGAGTGATGGTCTTTCCGGTCAGCGTTTTCACAAAAATCTGCAT 5642
>seq24704
Length=53625
Score = 105 bits (116), Expect = 5e-18
Identities = 168/241 (70%), Gaps = 0/241 (0%)
Strand=Plus/Minus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
|| || | || ||| ||||||| |||||| || || ||||| || ||||| || || |
Sbjct 37703 CCACCGCGCAGACGAAGCACCAGATGAAGGGTAGACTCTTTCTGGATGTTGTAGTCGGAC 37644
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| ||||| ||| || || || || || || | |||| | ||||||||||||||
Sbjct 37643 AGCGTGCGTCCATCCTCCAGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCCGGCGGG 37584
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739
|| ||||| ||||| || | || || ||| | || | || || || | || ||
Sbjct 37583 ATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACC 37524
Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTAAAACGTATG 29799
||||| || || || || || || | |||||| || || |||||||| || || ||| ||
Sbjct 37523 TCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCTTGAACCGTCTG 37464
Query 29800 C 29800
|
Sbjct 37463 C 37463
>seq734
Length=4884
Score = 96.9 bits (106), Expect = 3e-15
Identities = 162/230 (70%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
|| ||| |||| || ||||||| ||| | ||| ||| | | ||| || || ||||| |
Sbjct 2617 CCACCCTTCAACCGAAGCACCAGATGCATCGTCGATCCATGTTGGATATTGTAATCGGAG 2676
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
||| | ||| |||||| || || || || ||| | || | || ||||||||||| | |
Sbjct 2677 ATGATCCGACCATCATCCAGCTGCTTACCGGCAAAGATAATTCGCTGCTGATCCGGGGCA 2736
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACA--GTGTCAGA-AAGTTCT 29736
|| || || | || || |||||||| | | | ||| || || || | ||
Sbjct 2737 ATTCCTTCACGTTGTTCTA--TTTTGTTTTTAATGTCCAACACCGTTTCCGACGCGATC- 2793
Query 29737 ACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| |||||||| || || || |||||||| ||||| ||||| ||||||||
Sbjct 2794 ACCTCAAGAGTGATCGTCTTTCCAGTTAACGTTTTTACAAAGATCTGCAT 2843
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385076621827029
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |