Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20christyi_20[genbank_20GCA_5F000349165.1_202013-04-02]
30,369 sequences; 172,658,580 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq29242 152 1e-31
seq734 143 5e-29
seq9735 136 8e-27
seq3879 114 3e-20
seq14204 113 9e-20
>seq29242
Length=5648
Score = 152 bits (168), Expect = 1e-31
Identities = 170/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
|| || | || ||| ||||| | || || || ||||| ||||| || ||||| || ||
Sbjct 5416 CCACCGCGCAGACGAAGAACCAGATGGAGGGTGGATTCCTTCTGAATGTTATAGTCCGAC 5475
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
|| | | || ||||| || || ||||| |||||||| || | || |||||||| ||
Sbjct 5476 AGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGATCTGGTGGG 5535
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763
||||| |||||||| |||||||| || || ||||| ||||||||||| || || ||
Sbjct 5536 ATTCCCTCCTTATCCTGAATCTTGGCCTTGACATTCTCAATCGTATCGGATGGCTCAACC 5595
Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| | ||| || ||||| || |||| ||| || ||||| ||||||||
Sbjct 5596 TCGAGAGTGATGGTCTTTCCGGTCAGCGTTTTCACAAAAATCTGCAT 5642
>seq734
Length=4884
Score = 143 bits (158), Expect = 5e-29
Identities = 169/229 (74%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| || | || ||| || || | || || || ||||| ||||| || ||||| || |
Sbjct 9 TACCACCACGCAGACGAAGGACCAGATGGAGGGTGGATTCCTTCTGGATGTTATAGTCCG 68
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| || | | || ||||| || || ||||| |||||||| || | || |||||||| |
Sbjct 69 ACAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGATCTGGTG 128
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| ||||| |||||||| |||||||| || || ||||| ||||||||||| || || |
Sbjct 129 GGATTCCCTCCTTATCCTGAATCTTGGCCTTGACATTCTCAATCGTATCGGATGGCTCAA 188
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
| || | || || ||||| || |||| || || ||||| ||||||||
Sbjct 189 CCTCGAGGGTGATGGTCTTTCCGGTCAGAGTTTTCACAAAAATCTGCAT 237
>seq9735
Length=15595
Score = 136 bits (150), Expect = 8e-27
Identities = 159/215 (74%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655
||||| || | || || || ||||| ||||| ||||| || || || ||| | | |||
Sbjct 4824 CGCAGGACCAGATGAAGGGTCGATTCCTTCTGAATATTGTAGTCGGAGAGAGTGCGACCA 4765
Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715
|| || || || || || |||||||| || | || ||||||||||| || |||||||||
Sbjct 4764 TCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGAGGAATGCCTTCCTTA 4705
Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775
|| || ||||| || || ||||| || ||||| || ||| || || || | || ||
Sbjct 4704 TCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCCGAAGGCTCGACCTCAAGTGTGATG 4645
Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|||||||| || | ||| || || || ||||||||
Sbjct 4644 GTCTTGCCGGTGAGCGTTTTCACGAAAATCTGCAT 4610
>seq3879
Length=3897
Score = 114 bits (126), Expect = 3e-20
Identities = 149/206 (72%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 82605 AAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGT 82664
||||||| || || || ||||| || || ||||| || | | | | || || || ||
Sbjct 3896 AAGTGCAAGGTCGACTCCTTCTGGATGTTGTAATCGGACAAAGTACGTCCATCCTCCAGC 3837
Query 82665 TGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATC 82724
|| || || || ||||| | | || ||||||||||| || || ||||| || || |||
Sbjct 3836 TGCTTACCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGGATC 3777
Query 82725 TTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCT 82784
|| || || || || || ||||| || || || || |||||||| || ||||||||
Sbjct 3776 TTGGCCTTCACGTTCTCGATCGTGTCCGATGGCTCGACCTCCAAAGTGATGGTCTTGCCA 3717
Query 82785 GTCAACGTCTTTACAAATATCTGCAT 82810
|||| ||| || || || ||||||||
Sbjct 3716 GTCAGCGTTTTCACGAAGATCTGCAT 3691
>seq14204
Length=1823
Score = 113 bits (124), Expect = 9e-20
Identities = 215/313 (69%), Gaps = 4/313 (1%)
Strand=Plus/Minus
Query 198310 AACTCGAAAAGGCGGAAACACATGACCCTCTATGGAATGCATCGCAAATACAGATGATAA 198369
|||| |||| ||| |||| |||||| ||| ||||| || | || | |||||| | |
Sbjct 447 AACTGGAAACGGCCAAAACGCATGACGATCTGTGGAACTCAGCCCAGCTGCAGATGGTGA 388
Query 198370 GAGAAGGAAAAATGCATAGTTTTTTAAGAATGTACTGGGCTAAAAAGATACTTGAATGGA 198429
|| || || ||||| | || | | ||||||||||| |||||||| || || ||||
Sbjct 387 AGGAGGGCAAGATGCACGGCTTCCTGCGGATGTACTGGGCCAAAAAGATCCTGGAGTGGA 328
Query 198430 CAAGAACACCGGAAGACGC-TTTGAGTTATAG-TATCTATCTAAACAATAAGTACGAACT 198487
| | | | || || || || ||||| | || |||||||| ||| || ||| ||
Sbjct 327 CGAAATCGCCCGAGGAAGCGCTTGAG--ACAGCCATCTATCTGAACGATCGCTACAGTCT 270
Query 198488 AGACGGCACGGATCCTAACGGATACGTAGGTTGTATGTGGTCTATTTGCGGATTACATGA 198547
|| || ||||| ||||| ||||| ||||| |||||||| || ||| | || ||
Sbjct 269 GGATGGGCGCGATCCGAACGGGTACGTCGGTTGCATGTGGTCGATCGCCGGCATTCACGA 210
Query 198548 TCGAGCGTGGAAAGAAAGACCTATATTTGGGAAGATAAGATATATGAATTATGAGGGTTC 198607
|| | ||||| || | || ||||| ||||| | || ||||| ||||| || |
Sbjct 209 TCAGGGTTGGAAGGAGCGTGAAATCTTTGGAAAGATTCGGTACATGAACTATGACGGATG 150
Query 198608 TAAGAAAAAATTT 198620
|||| ||||||
Sbjct 149 TAAGCGTAAATTT 137
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981445168275091
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |