Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20christyi_20[genbank_20GCA_5F000349165.1_202013-04-02] 30,369 sequences; 172,658,580 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq29242 152 1e-31 seq734 143 5e-29 seq9735 136 8e-27 seq3879 114 3e-20 seq14204 113 9e-20 >seq29242 Length=5648 Score = 152 bits (168), Expect = 1e-31 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || ||| ||||| | || || || ||||| ||||| || ||||| || || Sbjct 5416 CCACCGCGCAGACGAAGAACCAGATGGAGGGTGGATTCCTTCTGAATGTTATAGTCCGAC 5475 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || || ||||| |||||||| || | || |||||||| || Sbjct 5476 AGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGATCTGGTGGG 5535 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||| |||||||| |||||||| || || ||||| ||||||||||| || || || Sbjct 5536 ATTCCCTCCTTATCCTGAATCTTGGCCTTGACATTCTCAATCGTATCGGATGGCTCAACC 5595 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| || ||||| || |||| ||| || ||||| |||||||| Sbjct 5596 TCGAGAGTGATGGTCTTTCCGGTCAGCGTTTTCACAAAAATCTGCAT 5642 >seq734 Length=4884 Score = 143 bits (158), Expect = 5e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || ||| || || | || || || ||||| ||||| || ||||| || | Sbjct 9 TACCACCACGCAGACGAAGGACCAGATGGAGGGTGGATTCCTTCTGGATGTTATAGTCCG 68 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || ||||| || || ||||| |||||||| || | || |||||||| | Sbjct 69 ACAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGATCTGGTG 128 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||| |||||||| |||||||| || || ||||| ||||||||||| || || | Sbjct 129 GGATTCCCTCCTTATCCTGAATCTTGGCCTTGACATTCTCAATCGTATCGGATGGCTCAA 188 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | || || ||||| || |||| || || ||||| |||||||| Sbjct 189 CCTCGAGGGTGATGGTCTTTCCGGTCAGAGTTTTCACAAAAATCTGCAT 237 >seq9735 Length=15595 Score = 136 bits (150), Expect = 8e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 ||||| || | || || || ||||| ||||| ||||| || || || ||| | | ||| Sbjct 4824 CGCAGGACCAGATGAAGGGTCGATTCCTTCTGAATATTGTAGTCGGAGAGAGTGCGACCA 4765 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || || |||||||| || | || ||||||||||| || ||||||||| Sbjct 4764 TCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGAGGAATGCCTTCCTTA 4705 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||| || || ||||| || ||||| || ||| || || || | || || Sbjct 4704 TCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCCGAAGGCTCGACCTCAAGTGTGATG 4645 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || | ||| || || || |||||||| Sbjct 4644 GTCTTGCCGGTGAGCGTTTTCACGAAAATCTGCAT 4610 >seq3879 Length=3897 Score = 114 bits (126), Expect = 3e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 82605 AAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGT 82664 ||||||| || || || ||||| || || ||||| || | | | | || || || || Sbjct 3896 AAGTGCAAGGTCGACTCCTTCTGGATGTTGTAATCGGACAAAGTACGTCCATCCTCCAGC 3837 Query 82665 TGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATC 82724 || || || || ||||| | | || ||||||||||| || || ||||| || || ||| Sbjct 3836 TGCTTACCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGGATC 3777 Query 82725 TTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCT 82784 || || || || || || ||||| || || || || |||||||| || |||||||| Sbjct 3776 TTGGCCTTCACGTTCTCGATCGTGTCCGATGGCTCGACCTCCAAAGTGATGGTCTTGCCA 3717 Query 82785 GTCAACGTCTTTACAAATATCTGCAT 82810 |||| ||| || || || |||||||| Sbjct 3716 GTCAGCGTTTTCACGAAGATCTGCAT 3691 >seq14204 Length=1823 Score = 113 bits (124), Expect = 9e-20 Identities = 215/313 (69%), Gaps = 4/313 (1%) Strand=Plus/Minus Query 198310 AACTCGAAAAGGCGGAAACACATGACCCTCTATGGAATGCATCGCAAATACAGATGATAA 198369 |||| |||| ||| |||| |||||| ||| ||||| || | || | |||||| | | Sbjct 447 AACTGGAAACGGCCAAAACGCATGACGATCTGTGGAACTCAGCCCAGCTGCAGATGGTGA 388 Query 198370 GAGAAGGAAAAATGCATAGTTTTTTAAGAATGTACTGGGCTAAAAAGATACTTGAATGGA 198429 || || || ||||| | || | | ||||||||||| |||||||| || || |||| Sbjct 387 AGGAGGGCAAGATGCACGGCTTCCTGCGGATGTACTGGGCCAAAAAGATCCTGGAGTGGA 328 Query 198430 CAAGAACACCGGAAGACGC-TTTGAGTTATAG-TATCTATCTAAACAATAAGTACGAACT 198487 | | | | || || || || ||||| | || |||||||| ||| || ||| || Sbjct 327 CGAAATCGCCCGAGGAAGCGCTTGAG--ACAGCCATCTATCTGAACGATCGCTACAGTCT 270 Query 198488 AGACGGCACGGATCCTAACGGATACGTAGGTTGTATGTGGTCTATTTGCGGATTACATGA 198547 || || ||||| ||||| ||||| ||||| |||||||| || ||| | || || Sbjct 269 GGATGGGCGCGATCCGAACGGGTACGTCGGTTGCATGTGGTCGATCGCCGGCATTCACGA 210 Query 198548 TCGAGCGTGGAAAGAAAGACCTATATTTGGGAAGATAAGATATATGAATTATGAGGGTTC 198607 || | ||||| || | || ||||| ||||| | || ||||| ||||| || | Sbjct 209 TCAGGGTTGGAAGGAGCGTGAAATCTTTGGAAAGATTCGGTACATGAACTATGACGGATG 150 Query 198608 TAAGAAAAAATTT 198620 |||| |||||| Sbjct 149 TAAGCGTAAATTT 137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981445168275091