Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20christyi_20[genbank_20GCA_5F000349165.1_202013-04-02] 30,369 sequences; 172,658,580 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq24704 105 4e-18 seq29242 91.5 1e-13 seq734 91.5 1e-13 seq9735 86.0 4e-12 seq3879 84.2 1e-11 >seq24704 Length=53625 Score = 105 bits (116), Expect = 4e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | || ||| | ||||| ||| || || |||||| || |||||||| |||| Sbjct 37705 CACCACCGCGCAGACGAAGCACCAGATGAAGGGTAGACTCTTTCTGGATGTTGTAGTCGG 37646 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | || |||||| | || |||| || || ||||| || |||| |||||||||||| ||| Sbjct 37645 ACAGCGTGCGTCCATCCTCCAGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCCGGCG 37586 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | || || ||||| || ||| ||| |||| || | || || | || Sbjct 37585 GGATTCCCTCCTTGTCCTGGATCTTCGCCTTC-ACATTCTCGATCGTATCCGAGGGCTCG 37527 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || |||| || || || ||||| || | ||||| || ||||||||||| Sbjct 37526 ACCTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 37477 >seq29242 Length=5648 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || ||| | |||| ||| || ||| || || || ||||| || || || Sbjct 5416 CCACCGCGCAGACGAAGAACCAGATGGAGGGTGGATTCCTTCTGAATGTTATAGTCCGAC 5475 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || ||||||||||| |||| ||||||||||||| | || Sbjct 5476 AGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGATCTGGTGGG 5535 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || || || ||| || | | |||| || | || ||| || || || Sbjct 5536 ATTCCCTCCTTATCCTGAATCTT-GGCCTTGACATTCTCAATCGTATCGGATGGCTCAAC 5594 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||| || || || || | |||||| ||||| ||||||||| Sbjct 5595 CTCGAGAGTGATGGTCTTTCCGGTCAGCGTTTTCACAAAAATCTGCATA 5643 >seq734 Length=4884 Score = 91.5 bits (100), Expect = 1e-13 Identities = 162/234 (69%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||| | |||| ||| || ||| || || || ||||| || || || Sbjct 10 ACCACCACGCAGACGAAGGACCAGATGGAGGGTGGATTCCTTCTGGATGTTATAGTCCGA 69 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || |||| || ||||||||||| |||| ||||||||||||| | || Sbjct 70 CAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGATCTGGTGG 129 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || || || ||| || | | |||| || | || ||| || || | Sbjct 130 GATTCCCTCCTTATCCTGAATCTT-GGCCTTGACATTCTCAATCGTATCGGATGGCTCAA 188 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTG 33754 | || | ||||| || || || || | ||||| ||||| ||||||||| ||| Sbjct 189 CCTCGAGGGTGATGGTCTTTCCGGTCAGAGTTTTCACAAAAATCTGCATATTTG 242 >seq9735 Length=15595 Score = 86.0 bits (94), Expect = 4e-12 Identities = 166/241 (69%), Gaps = 3/241 (1%) Strand=Plus/Minus Query 33520 TCACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCG 33579 |||||||| | | || | |||| ||| || || || || || || ||||| ||| Sbjct 4839 TCACCACCACGAAGTCGCAGGACCAGATGAAGGGTCGATTCCTTCTGAATATTGTAGTCG 4780 Query 33580 GAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGC 33639 ||||| ||||| | || |||| || || |||||||| |||| ||||||||||||| | Sbjct 4779 GAGAGAGTGCGACCATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGA 4720 Query 33640 GGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTC 33698 || | ||||| || || || || ||| |||| || | ||||| | || Sbjct 4719 GGAATGCCTTCCTTATCCTGGATCTTGGCCTTC-ACATTCTCGATCGTGTCCGAAGGCTC 4661 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTGGTGT 33758 || |||| ||||| || || || || | |||||| || || |||||||| ||| ||| Sbjct 4660 GACCTCAAGTGTGATGGTCTTGCCGGTGAGCGTTTTCACGAAAATCTGCAT-GTTTCTGT 4602 Query 33759 G 33759 | Sbjct 4601 G 4601 >seq3879 Length=3897 Score = 84.2 bits (92), Expect = 1e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || |||||||||||||| | || ||| | || |||| || || ||||| || Sbjct 3882 CTCCTTCTGGATGTTGTAATCGGACAAAGTACGTCCATCCTCCAGCTGCTTACCGGCGAA 3823 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 |||||||||||||||||| | || | || || ||||| || || ||| || | Sbjct 3822 GATCAAACGCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTC-ACGT 3764 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 || | ||||| || || || || | ||||| || || || || | |||||| | Sbjct 3763 TCTCGATCGTGTCCGATGGCTCGACCTCCAAAGTGATGGTCTTGCCAGTCAGCGTTTTCA 3704 Query 33737 CAAAGATCTGCAT 33749 | ||||||||||| Sbjct 3703 CGAAGATCTGCAT 3691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328582339356480