Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20christyi_20[genbank_20GCA_5F000349165.1_202013-04-02] 30,369 sequences; 172,658,580 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq3879 104 6e-17 seq24704 102 2e-16 seq9735 87.8 4e-12 >seq3879 Length=3897 Score = 104 bits (114), Expect = 6e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 |||||||| || || || || ||||||||||| || || || ||||| |||| Sbjct 3706 AAAACGCTGACTGGCAAGACCATCACTTTGGAGGTCGAGCCATCGGACACGATCGAGAAC 3765 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || ||| || || || | | |||||| Sbjct 3766 GTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCAGATCAGCAGCGTTTGATCTTC 3825 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| |||||| | |||||| ||||||||||| ||||||| ||||| Sbjct 3826 GCCGGTAAGCAGCTGGAGGATGGACGTACTTTGTCCGATTACAACATCCAGAAGGAGTCG 3885 Query 206365 AC 206366 || Sbjct 3886 AC 3887 >seq24704 Length=53625 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || |||||| ||||| || || || || || | || || || || || Sbjct 37480 CAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGCCCTCGGAT 37539 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || || ||||| |||||| || Sbjct 37540 ACGATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGAATCCCGCCGGATCAGCAG 37599 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| |||| |||||| | || || |||| |||||| || Sbjct 37600 CGTCTGATCTTCGCCGGTAAGCAGCTGGAGGATGGACGCACGCTGTCCGACTACAACATC 37659 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 |||||||||||||| ||||| || || Sbjct 37660 CAGAAAGAGTCTACCCTTCATCTGGT 37685 Score = 87.8 bits (96), Expect = 4e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 || || ||||| |||||||||||||||| || ||||| | || || | |||||| ||| Sbjct 37685 ACCAGATGAAGGGTAGACTCTTTCTGGATGTTGTAGTCGGACAGCGTGCGTCCATCCTCC 37626 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 |||||||| ||||||||||| || || || ||| Sbjct 37625 AGCTGCTTACCGGCGAAGATCAGACGCTGCTGA 37593 >seq9735 Length=15595 Score = 87.8 bits (96), Expect = 4e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||||||||| || || || ||||| | || || || ||| ||||| |||| Sbjct 4625 AAAACGCTCACCGGCAAGACCATCACACTTGAGGTCGAGCCTTCGGACACGATCGAGAAT 4684 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || ||||| ||| || || || | || ||||| Sbjct 4685 GTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCAGATCAGCAGCGTCTGATCTTT 4744 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| ||||| | ||| | |||| ||||| | ||||| || || Sbjct 4745 GCCGGCAAGCAGCTGGAGGATGGTCGCACTCTCTCCGACTACAATATTCAGAAGGAATCG 4804 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || ||||| || || || ||||||| Sbjct 4805 ACCCTTCATCTGGTCCTGCGACTTCG 4830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181360950202849