Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20christyi_20[genbank_20GCA_5F000349165.1_202013-04-02] 30,369 sequences; 172,658,580 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq3879 140 3e-28 seq9735 107 2e-18 seq24704 104 2e-17 seq14204 100 3e-16 seq29242 96.9 3e-15 seq734 96.9 3e-15 >seq3879 Length=3897 Score = 140 bits (154), Expect = 3e-28 Identities = 151/199 (76%), Gaps = 6/199 (3%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || ||||||||||||| ||| || || | || |||||||||||||| || || Sbjct 3882 CTCCTTCTGGATGTTGTAATCGGACAAAGTACGTCCATCCTCCAGCTGCTTACCGGCGAA 3823 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| |||||||| || | ||||| || |||||||||| |||||| ||||| | Sbjct 3822 GATCAAACGCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTT 3763 Query 35665 TGCCACCGTGTCGCTCGAT---TCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTT 35721 | | |||||| |||| || ||||||| ||||| || || || |||| ||||| Sbjct 3762 CTCGATCGTGTC---CGATGGCTCGACCTCCAAAGTGATGGTCTTGCCAGTCAGCGTTTT 3706 Query 35722 CACAAATATCTGCATTCTG 35740 ||| || |||||||| ||| Sbjct 3705 CACGAAGATCTGCATCCTG 3687 >seq9735 Length=15595 Score = 107 bits (118), Expect = 2e-18 Identities = 172/245 (70%), Gaps = 4/245 (2%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | || |||| ||| | || ||||| ||||| ||||| |||| Sbjct 4836 CCACCACGAAGTCGCAGGACCAGATGAAGGGTCGATTCCTTCTGAATATTGTAGTCGGAG 4777 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || ||||||||||| || ||||| |||| |||||||| || | |||| Sbjct 4776 AGAGTGCGACCATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGAGGA 4717 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || ||||| ||| |||||| ||||| | | | | |||||| | || ||| Sbjct 4716 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCCGAAGGCTCGACC 4657 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCA---TTCTGTG-CGC 35745 || | ||||| || || || || | |||||||| || ||||||| ||||||| || Sbjct 4656 TCAAGTGTGATGGTCTTGCCGGTGAGCGTTTTCACGAAAATCTGCATGTTTCTGTGAAGC 4597 Query 35746 ACACA 35750 ||||| Sbjct 4596 ACACA 4592 >seq24704 Length=53625 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||| ||| | ||| ||| || || |||||||| |||| || || || | || || Sbjct 37686 CACCAGATGAAGGGTAGACTCTTTCTGGATGTTGTAGTCGGACAGCGTGCGTCCATCCTC 37627 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 |||||||||||| || || |||| |||||||| |||| || | | |||||||||| Sbjct 37626 CAGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCCGGCGGGATTCCCTCCTTGTCCTG 37567 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 |||||| ||||| | | | | ||| || | || ||||| | || || || || Sbjct 37566 GATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATGGTCTT 37507 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||||| | ||||| || || |||||||| Sbjct 37506 ACCCGTGAGGGTTTTGACGAAGATCTGCAT 37477 >seq14204 Length=1823 Score = 100 bits (110), Expect = 3e-16 Identities = 202/297 (68%), Gaps = 2/297 (1%) Strand=Plus/Minus Query 44103 CTAGAGACGGCCTCCACCCATGATCCTTTGTGGAACGCTGCCCAAACACAACTGTTGCGA 44162 || || |||||| || ||||| | |||||||| | ||||| || || || Sbjct 445 CTGGAAACGGCCAAAACGCATGACGATCTGTGGAACTCAGCCCAGCTGCAGATGGTGAAG 386 Query 44163 GAAGGTAAAATGCACCAATACATGCGTATGTATTGGTGCAAGAAGATATTGGAGTGGTCG 44222 || || || |||||| | | |||| ||||| ||| ||| ||||| |||||||| || Sbjct 385 GAGGGCAAGATGCACGGCTTCCTGCGGATGTACTGGGCCAAAAAGATCCTGGAGTGGACG 326 Query 44223 GAAGATGCGCAAACCGCGCTCGTTCATGCCATCTATCTGAACGACAAGTACAGTTTGGAC 44282 || | | ||||| | ||||||||||||||||| |||||| |||| Sbjct 325 AAATCGCCCGAGGAAGCGCTTGAGACAGCCATCTATCTGAACGATCGCTACAGTCTGGAT 266 Query 44283 GGTCGCGACCCCAACGGGTACGTAGGATGTATGTGGTCCATTTGCGGTGTCCACGA-CAG 44341 || ||||| || ||||||||||| || || |||||||| || ||| | ||||| ||| Sbjct 265 GGGCGCGATCCGAACGGGTACGTCGGTTGCATGTGGTCGATCGCCGGCATTCACGATCAG 206 Query 44342 GGCGTGGCGAGAGCTACCCATCTACGGCAAAGTGCGCTACATGAACTACAACGGTTG 44398 || ||| |||| |||| || || | || ||||||||||| |||| || Sbjct 205 GGT-TGGAAGGAGCGTGAAATCTTTGGAAAGATTCGGTACATGAACTATGACGGATG 150 >seq29242 Length=5648 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| |||||||| || || | || ||| || | || ||||||||||| || ||||| Sbjct 5452 TCCTTCTGAATGTTATAGTCCGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAG 5511 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| |||||||| || | || | | |||||| ||| ||||| ||| | | | Sbjct 5512 ATCAGACGCTGCTGATCTGGTGGGATTCCCTCCTTATCCTGAATCTTGGCCTTGACATTC 5571 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||| ||| | || ||||| | ||||| || || || |||| ||||||||| Sbjct 5572 TCAATCGTATCGGATGGCTCAACCTCGAGAGTGATGGTCTTTCCGGTCAGCGTTTTCACA 5631 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 5632 AAAATCTGCAT 5642 >seq734 Length=4884 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || ||||| || || | || ||| || | || ||||||||||| || ||||| Sbjct 47 TCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAG 106 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| |||||||| || | || | | |||||| ||| ||||| ||| | | | Sbjct 107 ATCAGACGCTGCTGATCTGGTGGGATTCCCTCCTTATCCTGAATCTTGGCCTTGACATTC 166 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||| ||| | || ||||| | ||||| || || || |||| |||||||||| Sbjct 167 TCAATCGTATCGGATGGCTCAACCTCGAGGGTGATGGTCTTTCCGGTCAGAGTTTTCACA 226 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 227 AAAATCTGCAT 237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450622473114520