Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20christyi_20[genbank_20GCA_5F000349165.1_202013-04-02] 30,369 sequences; 172,658,580 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq25975 100 3e-16 seq22281 84.2 3e-11 >seq25975 Length=7706 Score = 100 bits (110), Expect = 3e-16 Identities = 613/972 (63%), Gaps = 21/972 (2%) Strand=Plus/Plus Query 104695 CCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAG 104754 |||||| | |||| |||||| ||||| || ||||| ||||||||| | || |||| || Sbjct 2421 CCGCGACATGTTCTACGCTCTGTGGATACCGGATCTGTTCATGAAGCGTGTGGAGGCGAA 2480 Query 104755 TGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGA 104814 || | ||| || | |||||| || | || ||||| | ||| | |||||| Sbjct 2481 TGAAATGTGGAGCCTGATGTGTCCACACGATTGTCCCGGTCTGGCAGATACGTGGGGTGA 2540 Query 104815 GGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGAC-GGTGC 104873 ||||| || || ||||| ||||||| |||| ||||| | | |||| ||| Sbjct 2541 AGAGTTCGAGAAGCTGTACACGGGGTACGAGAAAGAGGGTCGCTTTATT-CGACAGGTCA 2599 Query 104874 CAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACA 104933 ||| || ||||| || || || |||| || || || || |||||||| Sbjct 2600 AAGCACAGGACTTGTGGTTCGCGATCATCGAGTCGCAGGTGGAAACGGGCGTACCATACA 2659 Query 104934 TGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGA 104993 |||| ||||| || || || || | || |||||||| ||||| | || || || Sbjct 2660 TGCTGTACAAGGATGCATGCAATCGTAAAAGTAATCAGCAGAATGTCGGAACCATTAAAT 2719 Query 104994 GTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTA 105053 ||||||| || || || ||||| |||| | | | || || || || ||||| | Sbjct 2720 GTTCCAACCTGTGCACCGAAATTGTGGAGTATTCGTCGAAGGACGAAGTAGCGGTGTGCA 2779 Query 105054 ACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATG 105113 | || || || || ||| | || || ||| | | ||| || || | ||||| | Sbjct 2780 ATCTGGCCTCGATTGCTTTGAACATGTTTGTAAAGCAAGA---TAAAACGTATGATTTTA 2836 Query 105114 AAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAA 105173 || || | ||||| | || | || || || || |||| | |||||| | Sbjct 2837 CCAAGCTGAAGGAAGTCGCTAAGATAGTAACGCGCAATCTGAACAAGATCATTGATGTCA 2896 Query 105174 ATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTC 105230 | | || || || ||| || || || || ||| | ||||| || || ||| Sbjct 2897 ACTACTATCCTGTCCCGGAGGCTAAGCG---CTCCAACATGCGCCACCGACCCATCGGTA 2953 Query 105231 TCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGT-CGCCACGCATTTGATTCCGAC 105289 | ||||||||||| | || |||| |||| |||| | ||| | | | || ||| Sbjct 2954 TAGGTGTTCAGGGAATGGCCGATGCGTTCA-TCTTAATGCGCTATCCGTACGAAAGCGAG 3012 Query 105290 GAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCG 105349 || || | | | || | ||||| || ||||| ||| || || || || || Sbjct 3013 GAGGCTCAAAAGCTGAACCAACAAATATTCGAAACCATCTATTTCGGAGCACTGGAAGCT 3072 Query 105350 AGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCA 105409 || | |||||||| | |||||| || || ||||| | |||||| ||| | | Sbjct 3073 AGCTGTGAGTTGGCCGCTCGTGATGGACCGTACGAAACGTACGAGGGTAGTCC-GGTGAG 3131 Query 105410 CAAGGG-GTGCTTCAATTTGATATGTGG--GAAGGTG-AGACCAAGCTTCACTACGACTG 105465 ||||| | || || | || |||||| |||| | ||| |||| | |||| Sbjct 3132 TAAGGGCATCCTGCAGTACGAAATGTGGAACAAGGAGCCGACTGAGCT---GTGGAACTG 3188 Query 105466 GGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCC 105525 | | | |||||| || || | ||| | || || || || |||| || Sbjct 3189 GTCGGAGTTGAAGGAAAAAATAGCCAAGCACGGTATCCGCAATTCGCTGCTGTTGGCCCC 3248 Query 105526 AATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACAC 105585 ||||| || || || || || ||||| | || || ||||||| || || |||||||| Sbjct 3249 GATGCCGACGGCTTCGACAGCCCAAATTCTTGGCAACAATGAATCGTTCGAGCCCTACAC 3308 Query 105586 GACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATCT 105645 | ||||| | || ||| | || |||| |||||| | | || ||| | ||||| Sbjct 3309 GTCGAACGTATACAATAGACGCGTGCTATCGGGTGAGTTTCAGGTGGTAAACCACCATCT 3368 Query 105646 CGTGGATGACCT 105657 | || | || || Sbjct 3369 CCTGCAGGATCT 3380 >seq22281 Length=11977 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 94714 CTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAG 94773 || ||| | |||||| |||| | ||||| | | ||||| || || ||||| | || Sbjct 3304 CTGTTTAATGCCATCGAAACGCTGCCGTGCGTGAAGAAGAAGGCTGACTGGGCGCTAAAC 3245 Query 94774 TGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAG 94833 ||| | | ||| | | ||| | |||||| || | || || || || || Sbjct 3244 TGGATCTCCAGCAAGAAGGCTAACTTCGGTGAGCGTGTCGTGGCTTTCGCCGCCGTCGAA 3185 Query 94834 GGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATG 94893 |||||||||||| || |||| | |||| |||||||||||||| || || ||| Sbjct 3184 GGTATCTTCTTCAGCGGCAGCTTCGCTTCCATTTTCTGGCTCAAGAAGCGTGGCCTGATG 3125 Query 94894 CCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 || || ||| |||||| |||||||| || || || ||||| || || ||| Sbjct 3124 CCGGGACTCACCTTCTCGAACGAGCTGATTTCGCGCGACGAAGGGCTGCAC 3074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583039386909560