Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20christyi_20[genbank_20GCA_5F000349165.1_202013-04-02]
30,369 sequences; 172,658,580 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq25975 140 4e-28
seq28971 132 5e-26
seq5614 120 3e-22
>seq25975
Length=7706
Score = 140 bits (154), Expect = 4e-28
Identities = 328/490 (67%), Gaps = 4/490 (1%)
Strand=Plus/Plus
Query 53270 TACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCG 53329
|||||||| |||||| | || ||| |||| || | |||| | | |||||| | ||
Sbjct 2035 TACTTTACCCACGCCTCACCGACCATGTTTGCAGCGGCTACGCAGCGGCCTCAGCTCTCT 2094
Query 53330 AGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAG 53389
||| || ||| || | ||| ||||| || || || || ||||| || || |||
Sbjct 2095 TCCTGTTTTCTGCTGACCATGTCTGATGATAGCATTGAGGGTATTTACGATACTCTGAAG 2154
Query 53390 GAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCAC-TGCTCGAACGTCCG 53448
| ||||| | || || |||| | | ||||| || || | || ||| | | ||||
Sbjct 2155 CAATGTGCGCTGATTTCAAAGTCGGCCGGTGGCATTGGGCTGAACGTGCACTG-CATCCG 2213
Query 53449 TGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCT 53508
||||| || ||| ||| || || ||||| | | | ||| | ||||| |||||
Sbjct 2214 CGCGAAGGGAACATACATCTCCGGCACAAACGGTATTTCAAACGGATTGGTGCCGATGCT 2273
Query 53509 CCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTC 53568
||||| | |||||| ||||| |||||||| | ||||| || || | || |
Sbjct 2274 GCGCGTGTACAACAATACGGCACGGTACGTGGATCAGGGCGGCAACAAAAGGCCTGGAGC 2333
Query 53569 GTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCT 53628
||||||||||| || || |||||||| | || | | ||||||||||| ||
Sbjct 2334 ATTCGCCATCTATCTGGAACCGTGGCATGGTGATGTATTCGAGTTTCTCGATCTAAAGAA 2393
Query 53629 GAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TACAGCTCTGTGGATTCCGG 53687
|| || | |||||| | || ||| ||| |||| ||| ||||||||||| ||||
Sbjct 2394 AAACACTGGCAAGGAAGAGGTCCGTGCCCGCGACATGTTCTAC-GCTCTGTGGATACCGG 2452
Query 53688 ACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGT 53747
| || |||||| | |||||| | | || |||| ||||||||| || |||| |
Sbjct 2453 ATCTGTTCATGAAGCGTGTGGAGGCGAATGAAATGTGGAGCCTGATGTGTCCACACGATT 2512
Query 53748 GCCCCGGCCT 53757
| ||||| ||
Sbjct 2513 GTCCCGGTCT 2522
>seq28971
Length=24202
Score = 132 bits (146), Expect = 5e-26
Identities = 239/345 (69%), Gaps = 11/345 (3%)
Strand=Plus/Minus
Query 124508 GTGCGTCTCACCCGTGCCAATCACGAAATCTTCGGGAATCGACTGCTGCAACATAAGCCA 124567
||| || |||||||| |||| ||||||||||| || |||||||| ||| |||||
Sbjct 2755 GTGTGTTTCACCCGTCGCAATAACGAAATCTTCCGGCTGTTCCTGCTGCATCATGAGCCA 2696
Query 124568 CATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTTGGCATCCAGGTTTCCGAG 124627
||| || | ||||||||| | ||||||||||| || ||||| | || || || || ||
Sbjct 2695 CATTGCCTCGACGTAGTCTTTCGCGTGCCCCCAATCACGCTTCGAGTCTAGATTGCCCAG 2636
Query 124628 CTCGATTGGCT-----TGGCCG-TCTTGTTCCACTCCGCCAAACCCAGTGTAATCTTGCG 124681
||| | || |||||| | || || || | | | ||||| |||||
Sbjct 2635 CTCCAGGTACTCCTGCTGGCCGAGCGAAATCTTTGCCACCGAGC---GGGTAATTTTGCG 2579
Query 124682 CGTCACAAACTCGGAACCGCGTCGCTCAGACTCGTGGTTGAACAGAATGCCAGTACACGC 124741
||| || || | || || || ||||| ||||||||||| |||||| | || ||
Sbjct 2578 CGTGACGAAATTCTCTCCCCGGCGTGGTGACTCATGGTTGAACAGGATGCCATTGCAGGC 2519
Query 124742 AAACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCAATACCCAAAGAGCTTGG-ACA 124800
||||| ||||| |||||| |||||| || ||||||||||| | | ||||| |||
Sbjct 2518 GAACATATTGTACGCCTCGCGATAGTTTATCACAATCCAATACCCGTACATCTTGGCACA 2459
Query 124801 CGCCATAGGGGCTTCGGGGGTAGAATGGGGTGTTTTCATTTTGGG 124845
|| | || || || || ||||| || || || || || ||||
Sbjct 2458 CG-CGTACGGTGAGCGAGGATAGAACGGAGTCTTCTCGTTCTGGG 2415
>seq5614
Length=18782
Score = 120 bits (132), Expect = 3e-22
Identities = 282/422 (67%), Gaps = 13/422 (3%)
Strand=Plus/Minus
Query 152739 GATCAGCTTCGGCCAGTACACGTGGAACATGTTGAGGACCAAGCCCTTGATGTGCGATCC 152798
|| ||||| |||||||| | ||||| | ||||| | || ||||| ||||| |||||
Sbjct 14015 GAGCAGCTCCGGCCAGTTCGTGTGGATGAAGTTGATCAGCAGCCCCTTAATGTGAGATCC 13956
Query 152799 GTCAAGATCCGCGTCGGTCATGATCATCA----GACG-ACCGTAGCG----CAGGTCA-- 152847
||| ||||| |||||||| ||||| | | || |||| |||| ||||||
Sbjct 13955 GTCCTGATCCTGATCGGTCATAATCATTACCTTGCCGTACCGCAGCGTCTTCAGGTCGTC 13896
Query 152848 CGTAGTGACCCGTAGACCTTTCCATGTTGAAGCCCGAGGATCTTTTTGAGGTTGGAAAAT 152907
| | |||| ||| |||| || || || ||||| || || | || ||| | |
Sbjct 13895 CATCGTGAG--GTACTTCTTTTTATACTGCAGGCCGAGAATTTTGATCAGATTGTTGATT 13838
Query 152908 TCCTCATTATCGGTCACCTGTTTCACCGTGGCATCCCGAACATTGCGCGGCTTTCCCCGG 152967
|| |||| || | ||| || || || || || || || | |||| || ||
Sbjct 13837 TCTGCATTTTCCAAGATCTGCTTGTGGGTCGCTTCGCGCACGTTCAACAGCTTACCGCGC 13778
Query 152968 AGTGGAAACACGCCGAACGCGTTGCGGCCTACAACGCTCAGACCGGCAATAGCAAGGGCT 153027
| ||||||||||||| ||| || ||||| || || | ||| |||| | || || | |
Sbjct 13777 AATGGAAACACGCCGTACGTGTCACGGCCGACCACCCCCAGCCCGGACACGGCCAGCGTT 13718
Query 153028 TTCGCCGAGTCACCCTCGGTGATAATAAGCGTACAGTCGTGAGACCGATGAGTACCGGCC 153087
|| ||||| || ||||| |||| || ||||| |||| | | || | | ||| ||
Sbjct 13717 TTGGCCGAATCTCCCTCAGTGAGGATGAGCGTGCAGTTGAGCGAATTTCGCGAACCAGCA 13658
Query 153088 CAGTTGGCGTCGTCAAGCTTGGGGATTCCCGTGATCCTGCTTTTCTTAGAGCCGTCGGTT 153147
||| ||||| || |||||||| || ||| | ||| | ||||| |||||| |||
Sbjct 13657 TCGTTAGCGTCCTCCAGCTTGGGAATGCCCTTTATCTTCGACTTCTTCGAGCCGGACGTT 13598
Query 153148 TT 153149
||
Sbjct 13597 TT 13596
Score = 111 bits (122), Expect = 2e-19
Identities = 273/412 (66%), Gaps = 19/412 (5%)
Strand=Plus/Minus
Query 117977 AGCTGAGGCCAGTACACGTGGATCATGTTCAGCACGAGCCCCTTGATATGGGAACCGTCC 118036
|||| ||||||| | |||||| | ||| | || |||||||| || || || ||||||
Sbjct 14011 AGCTCCGGCCAGTTCGTGTGGATGAAGTTGATCAGCAGCCCCTTAATGTGAGATCCGTCC 13952
Query 118037 AGATCCGCATCGGTCATGATCATCAGGCGGCCGTACCGTAAA-TCTCTCAGGGAGTTA-- 118093
||||| ||||||||| ||||| | ||||||||| | ||| ||||| ||
Sbjct 13951 TGATCCTGATCGGTCATAATCATTACCTTGCCGTACCGCAGCGTCT-TCAGGTCGTCCAT 13893
Query 118094 -------TAAACCTTACCATGTTGGAGCCCGAGGATCTTTTTAAGGTTGGAAAATTCCTC 118146
|| ||| || || || ||||| || || | || ||| | ||| |
Sbjct 13892 CGTGAGGTACTTCTTTTTATACTGCAGGCCGAGAATTTTGATCAGATTGTTGATTTCTGC 13833
Query 118147 ATTTTCCGTCACCTGTTTTATGGTGGCGTCCCGAACGTTGCGCGGCTTACCCCGCAGTGG 118206
||||||| | ||| || ||| || || || ||||| | ||||||| |||| |||
Sbjct 13832 ATTTTCCAAGATCTGCTTGTGGGTCGCTTCGCGCACGTTCAACAGCTTACCGCGCAATGG 13773
Query 118207 AAACACGCCAAACTTGTCACGGCCCACAACGCTCAAGCCGGCAATAGCAAGGGCCTTCGC 118266
||||||||| || |||||||||| || || | || |||| | || || | || ||
Sbjct 13772 AAACACGCCGTACGTGTCACGGCCGACCACCCCCAGCCCGGACACGGCCAGCGTTTTGGC 13713
Query 118267 CGAGTCACCCTCGGTAATAATAAGAGTGCACTCGGTGCTGCGA----TGAGTACCGGCCC 118322
||| || ||||| || | || || ||||| || |||| | | ||| ||
Sbjct 13712 CGAATCTCCCTCAGTGAGGATGAGCGTGCA----GTTGAGCGAATTTCGCGAACCAGCAT 13657
Query 118323 AATTAGCATCATCCAGCTTCGGAACGCCCGTAATGCGCGACTTTTTGGACCC 118374
||||| || |||||||| |||| |||| | || |||||| || || ||
Sbjct 13656 CGTTAGCGTCCTCCAGCTTGGGAATGCCCTTTATCTTCGACTTCTTCGAGCC 13605
Score = 86.0 bits (94), Expect = 7e-12
Identities = 86/112 (77%), Gaps = 0/112 (0%)
Strand=Plus/Minus
Query 119064 TAAATTTCGAACTGAACACGTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCA 119123
|||| || | ||||| | |||| ||||| |||||||| ||||| || ||||||||||
Sbjct 12852 TAAACTTGGTGCTGAAAATGTTGCAAAGCTTCGCACCGTACCCGTTACGGCCACCGGTCA 12793
Query 119124 CGCGCTGCTCCTCGTCGTTGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGAT 119175
| || |||||| ||||||||||| ||| ||| | || || ||||||||
Sbjct 12792 CCTTCTCCTCCTCATCGTTGTAGTTCGAGGAGGTTAGCAGATGGCCAAAGAT 12741
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547008269966200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |