Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20christyi_20[genbank_20GCA_5F000349165.1_202013-04-02] 30,369 sequences; 172,658,580 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq25975 140 4e-28 seq28971 132 5e-26 seq5614 120 3e-22 >seq25975 Length=7706 Score = 140 bits (154), Expect = 4e-28 Identities = 328/490 (67%), Gaps = 4/490 (1%) Strand=Plus/Plus Query 53270 TACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCG 53329 |||||||| |||||| | || ||| |||| || | |||| | | |||||| | || Sbjct 2035 TACTTTACCCACGCCTCACCGACCATGTTTGCAGCGGCTACGCAGCGGCCTCAGCTCTCT 2094 Query 53330 AGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAG 53389 ||| || ||| || | ||| ||||| || || || || ||||| || || ||| Sbjct 2095 TCCTGTTTTCTGCTGACCATGTCTGATGATAGCATTGAGGGTATTTACGATACTCTGAAG 2154 Query 53390 GAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCAC-TGCTCGAACGTCCG 53448 | ||||| | || || |||| | | ||||| || || | || ||| | | |||| Sbjct 2155 CAATGTGCGCTGATTTCAAAGTCGGCCGGTGGCATTGGGCTGAACGTGCACTG-CATCCG 2213 Query 53449 TGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCT 53508 ||||| || ||| ||| || || ||||| | | | ||| | ||||| ||||| Sbjct 2214 CGCGAAGGGAACATACATCTCCGGCACAAACGGTATTTCAAACGGATTGGTGCCGATGCT 2273 Query 53509 CCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTC 53568 ||||| | |||||| ||||| |||||||| | ||||| || || | || | Sbjct 2274 GCGCGTGTACAACAATACGGCACGGTACGTGGATCAGGGCGGCAACAAAAGGCCTGGAGC 2333 Query 53569 GTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCT 53628 ||||||||||| || || |||||||| | || | | ||||||||||| || Sbjct 2334 ATTCGCCATCTATCTGGAACCGTGGCATGGTGATGTATTCGAGTTTCTCGATCTAAAGAA 2393 Query 53629 GAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TACAGCTCTGTGGATTCCGG 53687 || || | |||||| | || ||| ||| |||| ||| ||||||||||| |||| Sbjct 2394 AAACACTGGCAAGGAAGAGGTCCGTGCCCGCGACATGTTCTAC-GCTCTGTGGATACCGG 2452 Query 53688 ACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGT 53747 | || |||||| | |||||| | | || |||| ||||||||| || |||| | Sbjct 2453 ATCTGTTCATGAAGCGTGTGGAGGCGAATGAAATGTGGAGCCTGATGTGTCCACACGATT 2512 Query 53748 GCCCCGGCCT 53757 | ||||| || Sbjct 2513 GTCCCGGTCT 2522 >seq28971 Length=24202 Score = 132 bits (146), Expect = 5e-26 Identities = 239/345 (69%), Gaps = 11/345 (3%) Strand=Plus/Minus Query 124508 GTGCGTCTCACCCGTGCCAATCACGAAATCTTCGGGAATCGACTGCTGCAACATAAGCCA 124567 ||| || |||||||| |||| ||||||||||| || |||||||| ||| ||||| Sbjct 2755 GTGTGTTTCACCCGTCGCAATAACGAAATCTTCCGGCTGTTCCTGCTGCATCATGAGCCA 2696 Query 124568 CATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTTGGCATCCAGGTTTCCGAG 124627 ||| || | ||||||||| | ||||||||||| || ||||| | || || || || || Sbjct 2695 CATTGCCTCGACGTAGTCTTTCGCGTGCCCCCAATCACGCTTCGAGTCTAGATTGCCCAG 2636 Query 124628 CTCGATTGGCT-----TGGCCG-TCTTGTTCCACTCCGCCAAACCCAGTGTAATCTTGCG 124681 ||| | || |||||| | || || || | | | ||||| ||||| Sbjct 2635 CTCCAGGTACTCCTGCTGGCCGAGCGAAATCTTTGCCACCGAGC---GGGTAATTTTGCG 2579 Query 124682 CGTCACAAACTCGGAACCGCGTCGCTCAGACTCGTGGTTGAACAGAATGCCAGTACACGC 124741 ||| || || | || || || ||||| ||||||||||| |||||| | || || Sbjct 2578 CGTGACGAAATTCTCTCCCCGGCGTGGTGACTCATGGTTGAACAGGATGCCATTGCAGGC 2519 Query 124742 AAACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCAATACCCAAAGAGCTTGG-ACA 124800 ||||| ||||| |||||| |||||| || ||||||||||| | | ||||| ||| Sbjct 2518 GAACATATTGTACGCCTCGCGATAGTTTATCACAATCCAATACCCGTACATCTTGGCACA 2459 Query 124801 CGCCATAGGGGCTTCGGGGGTAGAATGGGGTGTTTTCATTTTGGG 124845 || | || || || || ||||| || || || || || |||| Sbjct 2458 CG-CGTACGGTGAGCGAGGATAGAACGGAGTCTTCTCGTTCTGGG 2415 >seq5614 Length=18782 Score = 120 bits (132), Expect = 3e-22 Identities = 282/422 (67%), Gaps = 13/422 (3%) Strand=Plus/Minus Query 152739 GATCAGCTTCGGCCAGTACACGTGGAACATGTTGAGGACCAAGCCCTTGATGTGCGATCC 152798 || ||||| |||||||| | ||||| | ||||| | || ||||| ||||| ||||| Sbjct 14015 GAGCAGCTCCGGCCAGTTCGTGTGGATGAAGTTGATCAGCAGCCCCTTAATGTGAGATCC 13956 Query 152799 GTCAAGATCCGCGTCGGTCATGATCATCA----GACG-ACCGTAGCG----CAGGTCA-- 152847 ||| ||||| |||||||| ||||| | | || |||| |||| |||||| Sbjct 13955 GTCCTGATCCTGATCGGTCATAATCATTACCTTGCCGTACCGCAGCGTCTTCAGGTCGTC 13896 Query 152848 CGTAGTGACCCGTAGACCTTTCCATGTTGAAGCCCGAGGATCTTTTTGAGGTTGGAAAAT 152907 | | |||| ||| |||| || || || ||||| || || | || ||| | | Sbjct 13895 CATCGTGAG--GTACTTCTTTTTATACTGCAGGCCGAGAATTTTGATCAGATTGTTGATT 13838 Query 152908 TCCTCATTATCGGTCACCTGTTTCACCGTGGCATCCCGAACATTGCGCGGCTTTCCCCGG 152967 || |||| || | ||| || || || || || || || | |||| || || Sbjct 13837 TCTGCATTTTCCAAGATCTGCTTGTGGGTCGCTTCGCGCACGTTCAACAGCTTACCGCGC 13778 Query 152968 AGTGGAAACACGCCGAACGCGTTGCGGCCTACAACGCTCAGACCGGCAATAGCAAGGGCT 153027 | ||||||||||||| ||| || ||||| || || | ||| |||| | || || | | Sbjct 13777 AATGGAAACACGCCGTACGTGTCACGGCCGACCACCCCCAGCCCGGACACGGCCAGCGTT 13718 Query 153028 TTCGCCGAGTCACCCTCGGTGATAATAAGCGTACAGTCGTGAGACCGATGAGTACCGGCC 153087 || ||||| || ||||| |||| || ||||| |||| | | || | | ||| || Sbjct 13717 TTGGCCGAATCTCCCTCAGTGAGGATGAGCGTGCAGTTGAGCGAATTTCGCGAACCAGCA 13658 Query 153088 CAGTTGGCGTCGTCAAGCTTGGGGATTCCCGTGATCCTGCTTTTCTTAGAGCCGTCGGTT 153147 ||| ||||| || |||||||| || ||| | ||| | ||||| |||||| ||| Sbjct 13657 TCGTTAGCGTCCTCCAGCTTGGGAATGCCCTTTATCTTCGACTTCTTCGAGCCGGACGTT 13598 Query 153148 TT 153149 || Sbjct 13597 TT 13596 Score = 111 bits (122), Expect = 2e-19 Identities = 273/412 (66%), Gaps = 19/412 (5%) Strand=Plus/Minus Query 117977 AGCTGAGGCCAGTACACGTGGATCATGTTCAGCACGAGCCCCTTGATATGGGAACCGTCC 118036 |||| ||||||| | |||||| | ||| | || |||||||| || || || |||||| Sbjct 14011 AGCTCCGGCCAGTTCGTGTGGATGAAGTTGATCAGCAGCCCCTTAATGTGAGATCCGTCC 13952 Query 118037 AGATCCGCATCGGTCATGATCATCAGGCGGCCGTACCGTAAA-TCTCTCAGGGAGTTA-- 118093 ||||| ||||||||| ||||| | ||||||||| | ||| ||||| || Sbjct 13951 TGATCCTGATCGGTCATAATCATTACCTTGCCGTACCGCAGCGTCT-TCAGGTCGTCCAT 13893 Query 118094 -------TAAACCTTACCATGTTGGAGCCCGAGGATCTTTTTAAGGTTGGAAAATTCCTC 118146 || ||| || || || ||||| || || | || ||| | ||| | Sbjct 13892 CGTGAGGTACTTCTTTTTATACTGCAGGCCGAGAATTTTGATCAGATTGTTGATTTCTGC 13833 Query 118147 ATTTTCCGTCACCTGTTTTATGGTGGCGTCCCGAACGTTGCGCGGCTTACCCCGCAGTGG 118206 ||||||| | ||| || ||| || || || ||||| | ||||||| |||| ||| Sbjct 13832 ATTTTCCAAGATCTGCTTGTGGGTCGCTTCGCGCACGTTCAACAGCTTACCGCGCAATGG 13773 Query 118207 AAACACGCCAAACTTGTCACGGCCCACAACGCTCAAGCCGGCAATAGCAAGGGCCTTCGC 118266 ||||||||| || |||||||||| || || | || |||| | || || | || || Sbjct 13772 AAACACGCCGTACGTGTCACGGCCGACCACCCCCAGCCCGGACACGGCCAGCGTTTTGGC 13713 Query 118267 CGAGTCACCCTCGGTAATAATAAGAGTGCACTCGGTGCTGCGA----TGAGTACCGGCCC 118322 ||| || ||||| || | || || ||||| || |||| | | ||| || Sbjct 13712 CGAATCTCCCTCAGTGAGGATGAGCGTGCA----GTTGAGCGAATTTCGCGAACCAGCAT 13657 Query 118323 AATTAGCATCATCCAGCTTCGGAACGCCCGTAATGCGCGACTTTTTGGACCC 118374 ||||| || |||||||| |||| |||| | || |||||| || || || Sbjct 13656 CGTTAGCGTCCTCCAGCTTGGGAATGCCCTTTATCTTCGACTTCTTCGAGCC 13605 Score = 86.0 bits (94), Expect = 7e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 119064 TAAATTTCGAACTGAACACGTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCA 119123 |||| || | ||||| | |||| ||||| |||||||| ||||| || |||||||||| Sbjct 12852 TAAACTTGGTGCTGAAAATGTTGCAAAGCTTCGCACCGTACCCGTTACGGCCACCGGTCA 12793 Query 119124 CGCGCTGCTCCTCGTCGTTGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGAT 119175 | || |||||| ||||||||||| ||| ||| | || || |||||||| Sbjct 12792 CCTTCTCCTCCTCATCGTTGTAGTTCGAGGAGGTTAGCAGATGGCCAAAGAT 12741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547008269966200