Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20christyi_20[genbank_20GCA_5F000349165.1_202013-04-02] 30,369 sequences; 172,658,580 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq29242 100 2e-16 seq24704 91.5 9e-14 seq3879 82.4 5e-11 >seq29242 Length=5648 Score = 100 bits (110), Expect = 2e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||| |||||| ||| ||||| ||||||||||| || || || || || Sbjct 5425 AGACGAAGAACCAGATGGAGGGTGGATTCCTTCTGAATGTTATAGTCCGACAGGGTGCGG 5484 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| || || || |||||||| || | |||||| || || || || | ||||||| Sbjct 5485 CCATCTTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGATCTGGTGGGATTCCCTCC 5544 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || || ||| || | || || | ||| || || ||| || || | || Sbjct 5545 TTATC-CTGAATCTTGGCCTTGACATTCTCAATCGTATCGGATGGCTCAACCTCGAGAGT 5603 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || ||||| | ||||||||||||||||||||| Sbjct 5604 GATGGTCTTTCCGGTCAGCGTTTTCACAAAAATCTGCAT 5642 >seq24704 Length=53625 Score = 91.5 bits (100), Expect = 9e-14 Identities = 156/224 (70%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| ||| || || ||| || || ||||| || || || || || || Sbjct 37694 AGACGAAGCACCAGATGAAGGGTAGACTCTTTCTGGATGTTGTAGTCGGACAGCGTGCGT 37635 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || |||||||| || || | |||||| || |||||||| | ||||||| Sbjct 37634 CCATCCTCCAGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCCGGCGGGATTCCCTCC 37575 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | || || | || || || | ||| || || | ||| Sbjct 37574 TTGTCCTGGATC-TTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGT 37516 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGA 34711 || || ||||| || | ||||| || || |||||||| |||| Sbjct 37515 AATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCTTGA 37472 >seq3879 Length=3897 Score = 82.4 bits (90), Expect = 5e-11 Identities = 138/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574 |||||| || ||||| ||||| || | || || | || || || || |||||||| || Sbjct 3882 CTCCTTCTGGATGTTGTAATCGGACAAAGTACGTCCATCCTCCAGCTGCTTACCGGCGAA 3823 Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGA 34634 || |||||||| || || || || | ||||||||||| |||| || | || ||| Sbjct 3822 GATCAAACGCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGGATC-TTGGCCTTCACGT 3764 Query 34635 T-AAAATTGTGTCTTCGCT--CTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTT 34691 | || ||||| || | ||| || |||| || || || || || || | |||||| Sbjct 3763 TCTCGATCGTGTC--CGATGGCTCGACCTCCAAAGTGATGGTCTTGCCAGTCAGCGTTTT 3706 Query 34692 CACAAAAATCTGCAT 34706 ||| || |||||||| Sbjct 3705 CACGAAGATCTGCAT 3691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314613111591977