Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20christyi_20[genbank_20GCA_5F000349165.1_202013-04-02]
30,369 sequences; 172,658,580 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq24704 154 3e-32
seq734 154 3e-32
seq9735 149 1e-30
seq29242 143 6e-29
seq3879 140 8e-28
>seq24704
Length=53625
Score = 154 bits (170), Expect = 3e-32
Identities = 163/215 (76%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || || ||||| || |||||||| |||||||| || || | || || | ||||||
Sbjct 37688 AGCACCAGATGAAGGGTAGACTCTTTCTGGATGTTGTAGTCGGACAGCGTGCGTCCATCC 37629
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
||||||||||| || |||||||| || || || || || || || | ||| |||||||||
Sbjct 37628 TCCAGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCCGGCGGGATTCCCTCCTTGTCC 37569
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| ||||| || ||||| || || ||| || ||||| || || || |||
Sbjct 37568 TGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATGGTC 37509
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
|| |||||||| || || || || | |||||| ||
Sbjct 37508 TTACCCGTGAGGGTTTTGACGAAGATCTGCATCTT 37474
>seq734
Length=4884
Score = 154 bits (170), Expect = 3e-32
Identities = 163/215 (76%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| || || || ||||| || || ||||||||||| |||| ||||| | ||||||
Sbjct 26 AGGACCAGATGGAGGGTGGATTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCT 85
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
||||||||||| || || ||||| || || || || || || || | ||| ||||| |||
Sbjct 86 TCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGATCTGGTGGGATTCCCTCCTTATCC 145
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| ||||| || || || || || || || || ||||||||||| ||||| |||
Sbjct 146 TGAATCTTGGCCTTGACATTCTCAATCGTATCGGATGGCTCAACCTCGAGGGTGATGGTC 205
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
||||| || ||||| || ||||| | |||||| ||
Sbjct 206 TTTCCGGTCAGAGTTTTCACAAAAATCTGCATATT 240
Score = 86.0 bits (94), Expect = 1e-11
Identities = 135/189 (71%), Gaps = 6/189 (3%)
Strand=Plus/Plus
Query 210929 TTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAG 210988
|||||| || ||||| | | | ||| ||||| ||||||||||| || || |||||||
Sbjct 2658 TTGGATATTGTAATCGGAGATGATCCGACCATCATCCAGCTGCTTACCGGCAAAGATAAT 2717
Query 210989 GCGTTGTTGGTCAGGAGGAACTCCTT--CCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046
|| || || || || | || ||||| | |||| || || || | ||| | ||
Sbjct 2718 TCGCTGCTGATCCGGGGCAATTCCTTCACGTTGTTCT--ATTTTGTTTTTAATGTCCAAC 2775
Query 211047 ATGGTGTCAGA-GCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105
| || || || || || ||||| ||||||||||||||||| || | || ||||||||
Sbjct 2776 ACCGTTTCCGACGCGATC-ACCTCAAGAGTGATCGTCTTTCCAGTTAACGTTTTTACAAA 2834
Query 211106 CACCTGCAT 211114
| ||||||
Sbjct 2835 GATCTGCAT 2843
>seq9735
Length=15595
Score = 149 bits (164), Expect = 1e-30
Identities = 168/225 (75%), Gaps = 0/225 (0%)
Strand=Plus/Minus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||||| ||||| || ||||| || || || || || || || || || | || ||
Sbjct 4831 ACGAAGTCGCAGGACCAGATGAAGGGTCGATTCCTTCTGAATATTGTAGTCGGAGAGAGT 4772
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| ||||| |||||||||||||| || ||||| || || || || || ||||||| ||
Sbjct 4771 GCGACCATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGAGGAATGCC 4712
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
|||||| ||||||||||| ||||| || ||||| ||||| || || ||||| ||
Sbjct 4711 TTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATCGTGTCCGAAGGCTCGACCTCAAG 4652
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
||||| ||||| || ||||| || || || || | |||||| ||
Sbjct 4651 TGTGATGGTCTTGCCGGTGAGCGTTTTCACGAAAATCTGCATGTT 4607
>seq29242
Length=5648
Score = 143 bits (158), Expect = 6e-29
Identities = 159/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || || || || ||||| || || || |||||||| |||| ||||| | ||||||
Sbjct 5431 AGAACCAGATGGAGGGTGGATTCCTTCTGAATGTTATAGTCCGACAGGGTGCGGCCATCT 5490
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
||||||||||| || || ||||| || || || || || || || | ||| ||||| |||
Sbjct 5491 TCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGATCTGGTGGGATTCCCTCCTTATCC 5550
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| ||||| || || || || || || || || ||||||||||||||||| |||
Sbjct 5551 TGAATCTTGGCCTTGACATTCTCAATCGTATCGGATGGCTCAACCTCGAGAGTGATGGTC 5610
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| || || || || ||||| | ||||||
Sbjct 5611 TTTCCGGTCAGCGTTTTCACAAAAATCTGCAT 5642
>seq3879
Length=3897
Score = 140 bits (154), Expect = 8e-28
Identities = 149/197 (76%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977
|| ||||| || |||||||| ||||| | | || | |||||| ||||||||||| ||
Sbjct 3887 GTCGACTCCTTCTGGATGTTGTAATCGGACAAAGTACGTCCATCCTCCAGCTGCTTACCG 3828
Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037
|||||||| | || || || || ||||||| || ||||||||||||||||| |||
Sbjct 3827 GCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTC 3768
Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097
||||| ||||| ||||| || || ||||| | |||||| ||||| || || || ||
Sbjct 3767 ACGTTCTCGATCGTGTCCGATGGCTCGACCTCCAAAGTGATGGTCTTGCCAGTCAGCGTT 3708
Query 211098 TTTACAAACACCTGCAT 211114
|| || || | ||||||
Sbjct 3707 TTCACGAAGATCTGCAT 3691
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1158700970696685
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |