Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20christyi_20[genbank_20GCA_5F000349165.1_202013-04-02] 30,369 sequences; 172,658,580 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq24704 104 2e-17 seq29242 102 6e-17 seq3879 102 6e-17 seq9735 98.7 7e-16 seq734 95.1 8e-15 >seq24704 Length=53625 Score = 104 bits (114), Expect = 2e-17 Identities = 145/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| |||||||||||||| || || || || || || || || || Sbjct 37474 AAGATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGCCC 37533 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 |||| || | || ||| | || | || || ||||| || || | ||||| || Sbjct 37534 TCGGATACGATCGAGAATGTGAAGGC-GAAGATCCAGGACAAGGAGGGAATCCCGCCGGA 37592 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| |||||| | || || ||||| || || ||||| || | |||||| | ||| || Sbjct 37593 TCAGCAGCGTCTGATCTTCGCCGGTAAGCAGCTGGAGGATGGACGCACGCTGTCCGACTA 37652 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || |||||||| || Sbjct 37653 CAACATCCAGAAAGAGTCTAC 37673 >seq29242 Length=5648 Score = 102 bits (112), Expect = 6e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || ||||| || || ||||| || ||||||||||| ||||| | | Sbjct 5642 ATGCAGATTTTTGTGAAAACGCTGACCGGAAAGACCATCACTCTCGAGGTTGAGCCATCC 5583 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | || | || ||| || || || || | || |||||||| Sbjct 5582 GATACGATTGAGAATGTCAAGGC-CAAGATTCAGGATAAGGAGGGAATCCCACCAGATCA 5524 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || |||||||| || || |||||||| | ||||| | || || || Sbjct 5523 GCAGCGTCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCGGACTATAA 5464 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGAT 23839 ||| || || || ||||| | ||| | ||| | | |||| || |||| Sbjct 5463 CATTCAGAAGGAATCCACCCTCCATCTGGTTCTTCGTCTGCGCGGTGGAT 5414 >seq3879 Length=3897 Score = 102 bits (112), Expect = 6e-17 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| ||||| || || || || || |||||| | || || || | || Sbjct 3691 ATGCAGATCTTCGTGAAAACGCTGACTGGCAAGACCATCACTTTGGAGGTCGAGCCATCG 3750 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||||| || || | || |||||||| Sbjct 3751 GACACGATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCAGATCAG 3810 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||||| || || ||||| || || ||||| || | ||| ||||| |||||||||| Sbjct 3811 CAGCGTTTGATCTTCGCCGGTAAGCAGCTGGAGGATGGACGTACTTTGTCCGATTACAAC 3870 Query 23791 ATACAAAAAGAGTCCACATTACATTT 23816 || || || ||||| || || || || Sbjct 3871 ATCCAGAAGGAGTCGACCTTGCACTT 3896 >seq9735 Length=15595 Score = 98.7 bits (108), Expect = 7e-16 Identities = 144/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| ||||| ||||| || || || ||||| || || || || | Sbjct 4607 AACATGCAGATTTTCGTGAAAACGCTCACCGGCAAGACCATCACACTTGAGGTCGAGCCT 4666 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 ||||||| | || ||| | || | || | | || || ||||| | || ||||| Sbjct 4667 TCGGACACGATCGAGAATGTGAAGGCCAAGA-TCCAGGATAAGGAAGGCATTCCTCCAGA 4725 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| |||||| | || ||||||||||| || ||||| || | |||||| | ||| || Sbjct 4726 TCAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGTCGCACTCTCTCCGACTA 4785 Query 23787 CAACATACAAAAAGAGTCCAC 23807 ||| || || || || || || Sbjct 4786 CAATATTCAGAAGGAATCGAC 4806 >seq734 Length=4884 Score = 95.1 bits (104), Expect = 8e-15 Identities = 143/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||||||||| || ||||| || || ||||| || ||||| ||||| ||||| | Sbjct 240 AATATGCAGATTTTTGTGAAAACTCTGACCGGAAAGACCATCACCCTCGAGGTTGAGCCA 181 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | || || |||| ||| | || | || ||| || || || || | || ||||| Sbjct 180 TCCGATACGATTGAGAATGTCAAGGC-CAAGATTCAGGATAAGGAGGGAATCCCACCAGA 122 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| |||||| | || |||||||| || || |||||||| | ||||| | || || Sbjct 121 TCAGCAGCGTCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCGGACTA 62 Query 23787 CAACATACAAAAAGAGTCCAC 23807 ||||| || || || ||||| Sbjct 61 TAACATCCAGAAGGAATCCAC 41 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337884495147452