Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20christyi_20[genbank_20GCA_5F000349165.1_202013-04-02]
30,369 sequences; 172,658,580 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq734 159 8e-34
seq24704 150 4e-31
seq29242 149 2e-30
seq9735 140 8e-28
seq3879 132 1e-25
>seq734
Length=4884
Score = 159 bits (176), Expect = 8e-34
Identities = 159/206 (77%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| ||||| ||||||||||| || ||||| || |||||||||||||| || || ||
Sbjct 234 CAGATTTTTGTGAAAACTCTGACCGGAAAGACCATCACCCTCGAGGTTGAGCCATCCGAT 175
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || ||||| ||||| ||||||||||| || || |||||||| || || |||||
Sbjct 174 ACGATTGAGAATGTCAAGGCCAAGATTCAGGATAAGGAGGGAATCCCACCAGATCAGCAG 115
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||| |||||||| ||||| |||||||| | || || | || |||||| ||
Sbjct 114 CGTCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCGGACTATAACATC 55
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || ||||| || || ||||| ||
Sbjct 54 CAGAAGGAATCCACCCTCCATCTGGT 29
>seq24704
Length=53625
Score = 150 bits (166), Expect = 4e-31
Identities = 157/206 (76%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| ||||| ||||| || || || || ||||| ||||| || ||| ||
Sbjct 37480 CAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGCCCTCGGAT 37539
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| |||||||| || || ||||| |||||||| || |||||||| ||||| |||||
Sbjct 37540 ACGATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGAATCCCGCCGGATCAGCAG 37599
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||||||||| || ||||| || |||||| | || || |||| || ||| ||
Sbjct 37600 CGTCTGATCTTCGCCGGTAAGCAGCTGGAGGATGGACGCACGCTGTCCGACTACAACATC 37659
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| ||||| || || || ||||| ||
Sbjct 37660 CAGAAAGAGTCTACCCTTCATCTGGT 37685
>seq29242
Length=5648
Score = 149 bits (164), Expect = 2e-30
Identities = 157/207 (76%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| ||||| |||||||| || || ||||| || ||||| |||||||| || || ||
Sbjct 5639 CAGATTTTTGTGAAAACGCTGACCGGAAAGACCATCACTCTCGAGGTTGAGCCATCCGAT 5580
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || ||||| ||||| ||||||||||| || || |||||||| || || |||||
Sbjct 5579 ACGATTGAGAATGTCAAGGCCAAGATTCAGGATAAGGAGGGAATCCCACCAGATCAGCAG 5520
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||| |||||||| ||||| |||||||| | || || | || |||||| |
Sbjct 5519 CGTCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCGGACTATAACATT 5460
Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130
|| || ||||| || || ||||| |||
Sbjct 5459 CAGAAGGAATCCACCCTCCATCTGGTT 5433
>seq9735
Length=15595
Score = 140 bits (154), Expect = 8e-28
Identities = 160/215 (74%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||||||||| ||||| || || || ||||| || ||||| || || |||
Sbjct 4613 CAGATTTTCGTGAAAACGCTCACCGGCAAGACCATCACACTTGAGGTCGAGCCTTCGGAC 4672
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| |||||||| || || ||||| ||||| || ||||| || ||||| || |||||
Sbjct 4673 ACGATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCAGATCAGCAG 4732
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||| ||||| || ||||| || ||||| | ||||| |||| || || |
Sbjct 4733 CGTCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGTCGCACTCTCTCCGACTACAATATT 4792
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138
|| || ||||| || || ||||| || || ||||
Sbjct 4793 CAGAAGGAATCGACCCTTCATCTGGTCCTGCGACT 4827
>seq3879
Length=3897
Score = 132 bits (146), Expect = 1e-25
Identities = 153/205 (75%), Gaps = 1/205 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||||||||| || || || || || ||||| | ||||| || || |||
Sbjct 3694 CAGATCTTCGTGAAAACGCTGACTGGCAAGACCATCACTTTGGAGGTCGAGCCATCGGAC 3753
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||||||||| || ||||| |||||||| || || || ||||| || |||||
Sbjct 3754 ACGATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCAGATCAGCAG 3813
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | ||||||||||| || ||||| || |||||| | ||| | ||||||| ||| ||
Sbjct 3814 CGTTTGATCTTCGCCGGTAAGCAGCTGGAGGATGGACGTACTTTGTCCGATTACAACATC 3873
Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128
|| || || || || |||| ||||
Sbjct 3874 CAGAAGGAGTCGACCTTGCA-CTTG 3897
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203262824804586
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |