Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21] 10,521 sequences; 224,417,174 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq7526 118 1e-21 seq7525 86.0 6e-12 >seq7526 Length=6110091 Score = 118 bits (130), Expect = 1e-21 Identities = 179/252 (71%), Gaps = 2/252 (1%) Strand=Plus/Plus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 || ||||| ||||| || || |||||| ||| ||| | || ||||| || ||||| Sbjct 4673506 ATGTACGTGTCGATCAGCAGCGAGTACATCTCGCTGTGCACATTTTCCATCGCAATCTGG 4673565 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGA 17353 || ||||| ||||| || || |||| | || || ||| | ||| |||||| | ||| Sbjct 4673566 AAGCCGTAGAAGCAGCGCGCCTCCGTAACCTGCACCTCCTGGCTGAAGCGTTCCACCAGA 4673625 Query 17354 TTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATAT 17413 || ||||||||||| |||||| |||||| || || |||| | || |||||| | Sbjct 4673626 TTCTCGTTCACGATACCGTCGGACGCGGCAAAGAAGGCCAGCACGTGGGAAATGAAGTGG 4673685 Query 17414 TTTTCGTCCGGTGTAAG-AACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTC 17472 |||| |||| | || || | ||||||||| | ||| ||||| | ||| || ||||| Sbjct 4673686 CGTTCGCTCGGTTTCAGCGACTC-CCAGTCCTTCATATCCTTGGACAGATCAACCTCTTC 4673744 Query 17473 GGGGGTCCAAAA 17484 |||||||| Sbjct 4673745 CACCGTCCAAAA 4673756 Score = 93.3 bits (102), Expect = 4e-14 Identities = 271/411 (66%), Gaps = 6/411 (1%) Strand=Plus/Plus Query 16798 ATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTAC 16857 ||| || ||||| || || || || |||| | || |||||||| || | | | || Sbjct 4672970 ATCGGCCACAAACTCAATGTACTGCGACATCAGATCACAGTTCATGCCCAGCATATCCAC 4673029 Query 16858 CGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAGC 16917 ||| || || | ||||| || ||||| || | ||||| || || || | Sbjct 4673030 CGGCAGTGCCTTCGTCAGGAACTCCTGCTCGATCAGGACCGCATCGCGGATGATCTCCGT 4673089 Query 16918 AACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCA 16977 || || |||| ||||| | || |||| || |||||||| || || || ||||| Sbjct 4673090 CACGCGCTCCTTCGACGGCTTCTGCACCAGATACTTGAACATCAGGCAGGCAAAGTCGCA 4673149 Query 16978 ATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCC 17037 || | || ||||| | ||| || ||||| || || || | || |||||| || Sbjct 4673150 GTGCAGCCCTTCGTCGCGCGAGATCAGCTCGTTCGAGAAGGTGAGTCCCGGCATCAGGCC 4673209 Query 17038 TCGTTTCTTTAACCAAAATATCGCGGCGAA-CGACC-CAGAAAAGAATATACCCTCGACG 17095 || ||||| | ||| || ||||||||||| | ||| | | ||||| |||||||| || Sbjct 4673210 ACGCTTCTTCAGCCAGAAGATCGCGGCGAAGCTACCGCTG--AAGAAGATACCCTCAACC 4673267 Query 17096 GATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGA-ATCCATTTCTG 17154 | || || || | | || ||| | | | || | ||| | ||| ||||| ||| | Sbjct 4673268 GCAGCGAATGCCACGACCCGCTCGCCAAAGTTGGCCTTCTTGCT-CGAGATCCAGTTCAG 4673326 Query 17155 CACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAA 17205 | |||| || || || |||| | ||| || |||||| ||||| || || Sbjct 4673327 CGCCCAGTCCGCCTTCCGCTTCACGCACGGCAGCGTTTCGATGGCATTGAA 4673377 >seq7525 Length=4038190 Score = 86.0 bits (94), Expect = 6e-12 Identities = 160/228 (70%), Gaps = 8/228 (4%) Strand=Plus/Minus Query 119813 CGTTCCTTCCACGCTCTG-TCGTGGAGCCCCGCTACGGCCCATAGGCATCCCACGTATCC 119871 || |||||||| || ||| ||||||| ||||| | | ||| | ||| || ||||| || Sbjct 440044 CGCTCCTTCCA-GCCCTGATCGTGGATGCCCGCGATCGACCACATGCAACCGACGTACCC 439986 Query 119872 GTTGGGATCCGTTCCATCTA-ACTCGTATTTATCGTTTAAGTAGATACAGACGCTTAACG 119930 ||| |||||| ||||| | ||| ||| |||||| | ||||| | || | | | Sbjct 439985 GTTCGGATCCCGCCCATCCAGACT-GTAGCGATCGTTCAGATAGATC--GCCGTCTCAAG 439929 Query 119931 CACTT--TCAGGAGTCTCGCTCCATTCCAGTAtttttttAGCCCAGTACATACGTAAGTA 119988 | ||| || || || | |||| ||||| || ||||| ||||||||||| || | | | Sbjct 439928 CGCTTCCTCGGGCGTTTTCGTCCACTCCAGGATCTTTTTGGCCCAGTACATGCGCAGGAA 439869 Query 119989 TCCATGCATTTTACCTTCACGAACCATTTGAAGTTGTGCGGCGTTCCA 120036 || ||||| || || || ||||| || || || || | |||||| Sbjct 439868 GCCGTGCATCTTGCCCTCCTTCACCATCTGCAGCTGGGCCGAGTTCCA 439821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517477536284280