Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21]
10,521 sequences; 224,417,174 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq7526 118 1e-21
seq7525 86.0 6e-12
>seq7526
Length=6110091
Score = 118 bits (130), Expect = 1e-21
Identities = 179/252 (71%), Gaps = 2/252 (1%)
Strand=Plus/Plus
Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293
|| ||||| ||||| || || |||||| ||| ||| | || ||||| || |||||
Sbjct 4673506 ATGTACGTGTCGATCAGCAGCGAGTACATCTCGCTGTGCACATTTTCCATCGCAATCTGG 4673565
Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGA 17353
|| ||||| ||||| || || |||| | || || ||| | ||| |||||| | |||
Sbjct 4673566 AAGCCGTAGAAGCAGCGCGCCTCCGTAACCTGCACCTCCTGGCTGAAGCGTTCCACCAGA 4673625
Query 17354 TTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATAT 17413
|| ||||||||||| |||||| |||||| || || |||| | || |||||| |
Sbjct 4673626 TTCTCGTTCACGATACCGTCGGACGCGGCAAAGAAGGCCAGCACGTGGGAAATGAAGTGG 4673685
Query 17414 TTTTCGTCCGGTGTAAG-AACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTC 17472
|||| |||| | || || | ||||||||| | ||| ||||| | ||| || |||||
Sbjct 4673686 CGTTCGCTCGGTTTCAGCGACTC-CCAGTCCTTCATATCCTTGGACAGATCAACCTCTTC 4673744
Query 17473 GGGGGTCCAAAA 17484
||||||||
Sbjct 4673745 CACCGTCCAAAA 4673756
Score = 93.3 bits (102), Expect = 4e-14
Identities = 271/411 (66%), Gaps = 6/411 (1%)
Strand=Plus/Plus
Query 16798 ATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTAC 16857
||| || ||||| || || || || |||| | || |||||||| || | | | ||
Sbjct 4672970 ATCGGCCACAAACTCAATGTACTGCGACATCAGATCACAGTTCATGCCCAGCATATCCAC 4673029
Query 16858 CGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAGC 16917
||| || || | ||||| || ||||| || | ||||| || || || |
Sbjct 4673030 CGGCAGTGCCTTCGTCAGGAACTCCTGCTCGATCAGGACCGCATCGCGGATGATCTCCGT 4673089
Query 16918 AACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCA 16977
|| || |||| ||||| | || |||| || |||||||| || || || |||||
Sbjct 4673090 CACGCGCTCCTTCGACGGCTTCTGCACCAGATACTTGAACATCAGGCAGGCAAAGTCGCA 4673149
Query 16978 ATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCC 17037
|| | || ||||| | ||| || ||||| || || || | || |||||| ||
Sbjct 4673150 GTGCAGCCCTTCGTCGCGCGAGATCAGCTCGTTCGAGAAGGTGAGTCCCGGCATCAGGCC 4673209
Query 17038 TCGTTTCTTTAACCAAAATATCGCGGCGAA-CGACC-CAGAAAAGAATATACCCTCGACG 17095
|| ||||| | ||| || ||||||||||| | ||| | | ||||| |||||||| ||
Sbjct 4673210 ACGCTTCTTCAGCCAGAAGATCGCGGCGAAGCTACCGCTG--AAGAAGATACCCTCAACC 4673267
Query 17096 GATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGA-ATCCATTTCTG 17154
| || || || | | || ||| | | | || | ||| | ||| ||||| ||| |
Sbjct 4673268 GCAGCGAATGCCACGACCCGCTCGCCAAAGTTGGCCTTCTTGCT-CGAGATCCAGTTCAG 4673326
Query 17155 CACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAA 17205
| |||| || || || |||| | ||| || |||||| ||||| || ||
Sbjct 4673327 CGCCCAGTCCGCCTTCCGCTTCACGCACGGCAGCGTTTCGATGGCATTGAA 4673377
>seq7525
Length=4038190
Score = 86.0 bits (94), Expect = 6e-12
Identities = 160/228 (70%), Gaps = 8/228 (4%)
Strand=Plus/Minus
Query 119813 CGTTCCTTCCACGCTCTG-TCGTGGAGCCCCGCTACGGCCCATAGGCATCCCACGTATCC 119871
|| |||||||| || ||| ||||||| ||||| | | ||| | ||| || ||||| ||
Sbjct 440044 CGCTCCTTCCA-GCCCTGATCGTGGATGCCCGCGATCGACCACATGCAACCGACGTACCC 439986
Query 119872 GTTGGGATCCGTTCCATCTA-ACTCGTATTTATCGTTTAAGTAGATACAGACGCTTAACG 119930
||| |||||| ||||| | ||| ||| |||||| | ||||| | || | | |
Sbjct 439985 GTTCGGATCCCGCCCATCCAGACT-GTAGCGATCGTTCAGATAGATC--GCCGTCTCAAG 439929
Query 119931 CACTT--TCAGGAGTCTCGCTCCATTCCAGTAtttttttAGCCCAGTACATACGTAAGTA 119988
| ||| || || || | |||| ||||| || ||||| ||||||||||| || | | |
Sbjct 439928 CGCTTCCTCGGGCGTTTTCGTCCACTCCAGGATCTTTTTGGCCCAGTACATGCGCAGGAA 439869
Query 119989 TCCATGCATTTTACCTTCACGAACCATTTGAAGTTGTGCGGCGTTCCA 120036
|| ||||| || || || ||||| || || || || | ||||||
Sbjct 439868 GCCGTGCATCTTGCCCTCCTTCACCATCTGCAGCTGGGCCGAGTTCCA 439821
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517477536284280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |