Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21] 10,521 sequences; 224,417,174 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq7525 102 8e-17 seq7526 95.1 1e-14 >seq7525 Length=4038190 Score = 102 bits (112), Expect = 8e-17 Identities = 184/262 (70%), Gaps = 8/262 (3%) Strand=Plus/Minus Query 118936 TTCATGTATCGTATCTTTCCAAATACGGTACGCTCCTTCCATGCTCTG-TCGTGGAGTCC 118994 |||||||| || || || ||||| | ||||||||||| || ||| ||||||| || Sbjct 440074 TTCATGTACCGAATTTTACCAAAGATTTCGCGCTCCTTCCA-GCCCTGATCGTGGATGCC 440016 Query 118995 TGCTACTGCCCATAGACATCCCACGTATCCGTTGGGATCTGTTCCGTCTA-ACTCGTACT 119053 || | | ||| | || || ||||| ||||| ||||| || || | ||| ||| Sbjct 440015 CGCGATCGACCACATGCAACCGACGTACCCGTTCGGATCCCGCCCATCCAGACT-GTAGC 439957 Query 119054 TATCGTTTAAGTAGATACAGACGCTTAACGCACTT--TCCGGAGTCTTACTCCATTCCAG 119111 |||||| | ||||| | || | | || ||| || || || || |||| ||||| Sbjct 439956 GATCGTTCAGATAGATC--GCCGTCTCAAGCGCTTCCTCGGGCGTTTTCGTCCACTCCAG 439899 Query 119112 TAtttttttAGCCCAGTACATACGTAAATACCCGTGCATTTTACCCTCGTTAATCATCTG 119171 || ||||| ||||||||||| || | | |||||||| || ||||| || | |||||| Sbjct 439898 GATCTTTTTGGCCCAGTACATGCGCAGGAAGCCGTGCATCTTGCCCTCCTTCACCATCTG 439839 Query 119172 AAGTTGTGCGGTGTTCCATAGA 119193 || || || | |||||| ||| Sbjct 439838 CAGCTGGGCCGAGTTCCACAGA 439817 >seq7526 Length=6110091 Score = 95.1 bits (104), Expect = 1e-14 Identities = 180/265 (68%), Gaps = 0/265 (0%) Strand=Plus/Plus Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531 || ||||| || ||||| | |||||| || ||| | || || || || ||||| Sbjct 4673506 ATGTACGTGTCGATCAGCAGCGAGTACATCTCGCTGTGCACATTTTCCATCGCAATCTGG 4673565 Query 16532 AATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGG 16591 || || |||||||| || ||||||| | || || ||| | || |||||| |||| Sbjct 4673566 AAGCCGTAGAAGCAGCGCGCCTCCGTAACCTGCACCTCCTGGCTGAAGCGTTCCACCAGA 4673625 Query 16592 TTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATAT 16651 ||||| |||||||||||||| || ||||| || |||| | ||| |||||| | Sbjct 4673626 TTCTCGTTCACGATACCGTCGGACGCGGCAAAGAAGGCCAGCACGTGGGAAATGAAGTGG 4673685 Query 16652 TTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCT 16711 |||| | | | || | ||| || || | ||| ||||| | ||| || ||||| Sbjct 4673686 CGTTCGCTCGGTTTCAGCGACTCCCAGTCCTTCATATCCTTGGACAGATCAACCTCTTCC 4673745 Query 16712 GGCGTCCAAAAGCTAGCCACTGCCT 16736 |||||||||| ||| | |||| Sbjct 4673746 ACCGTCCAAAAGGAAGCTTCCGCCT 4673770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511347142613720