Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21]
10,521 sequences; 224,417,174 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq7552 329 4e-85
>seq7552
Length=2500597
Score = 329 bits (364), Expect = 4e-85
Identities = 1195/1855 (64%), Gaps = 34/1855 (2%)
Strand=Plus/Plus
Query 52829 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 52888
|| || || ||||| ||||||||||| || ||||| | || | |||| || || |||
Sbjct 1134920 GCCGGCTTGGTACGCAGATAGTACATGCCAGTTTTCAACCCCATCTTCCAGCCATAGAAA 1134979
Query 52889 TGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 52948
|| || || || ||| ||| | || || || | || || || | |||||
Sbjct 1134980 TGGATCGACGTCAGCTTGCCATAGTTTGGCTCCGCGACGTGAATGTTGAACGATTGCGAC 1135039
Query 52949 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 53008
|||||||| || || || | ||||| |||||||| ||| ||| || | || |||
Sbjct 1135040 TGATCGATAAACGCGCCACGATCTGCGGCCATTTTGATGCACGTTTTCACCGAGATCTCC 1135099
Query 53009 CAAATAGTTTTATAAAC-TCGCTTAATATCTTCTGGAAGGTTTGTATTCT---GAATAGA 53064
|| | ||||| || | |||| ||| || | || | | | ||| | || ||
Sbjct 1135100 CATACCGTTTTGTACAGATCGCG-AATTTCCTGCGGTATAGCCGCAATCTTTTGGATCGA 1135158
Query 53065 TCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAA 53124
|||| | || ||| ||||| || || || ||| | | | ||| ||
Sbjct 1135159 TCCATTGTTGGACAGAATTTCGTTCTTCATGTCGAGATCCCACAGACCCATGTTGGTCAA 1135218
Query 53125 AACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTA 53184
| | || ||||| | || || || || || || || |||| || | || | ||||
Sbjct 1135219 ATCCTGCAGAAGATGATGGTTCACCACCTGGAACTCGCCCGACAGCACGCGCCTATTGTA 1135278
Query 53185 AATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGC 53244
|| || || ||||| || | || ||||| || || | |||||| || || || ||
Sbjct 1135279 AACGTTCGACGTGTACGGCTCGAACGATTCATTGTTGCCGAGAATTTGTGCCGTGGAAGC 1135338
Query 53245 AGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTT 53304
|||||||| || |||| || | ||| | || |||| | ||| || || ||
Sbjct 1135339 CGTCGGCATCGGGGCCAACAGCAGCGAATTGCGAATGCCGTGCTTGGCGATCTTTTCCTT 1135398
Query 53305 TAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAAT 53364
| |||| ||||| ||||||| |||| | || | ||
Sbjct 1135399 CAACTCGGCCCAGTTCCACAGATCCGTCGGTTCCTTGTTCCACATCTCGTACTGCAAGAT 1135458
Query 53365 ACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTT 53423
|| || || | | || ||| | || || ||||| || || || | || | |
Sbjct 1135459 GCCCTTGCTCACCGGACTGCCCT-CGTACGTCTCGTACGGACCATCTCGAGCGGCCAACT 1135517
Query 53424 CACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTT 53483
|||| ||||| || | || ||||| || ||||||||||| || | || |||||| | ||
Sbjct 1135518 CACAGCTCGCTTCCAGCGCGCCGTAGTAGATGGTTTCGAATATTTGCTGATTTAGCTTTT 1135577
Query 53484 GTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAA 53543
| || || ||| || | ||||| | || || ||||| || || | || || |
Sbjct 1135578 GAGCCTCTTCGCTTTCGTACGGATAGCGCATCAGGATGAACGCATCGGCCATGCCCTGCA 1135637
Query 53544 CACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAAT 53603
| || || ||||| || || || | | |||| ||| | ||| || || | ||||| |
Sbjct 1135638 CGCCGATCCCGATCGGCCTGTGGCGCATATTGGAGCGCTTAGCCTCCGGCACGGGATAGT 1135697
Query 53604 AATTAATATCTATAATTTTATTGAGGTTTC---TGACAATTACTTTGACCACATCCTTCA 53660
|||| | ||| || ||||| || || || | | || | ||| | | || |||||||
Sbjct 1135698 AATTGACATCAATGATTTTGTTCAGATTGCGCGTTACGGT--CTTAG-CGACTTCCTTCA 1135754
Query 53661 GTTTGAGAAAATCAAA----TTGTCCATCTATTACAAACATGTTCAATGCAATAGATGCC 53716
| || ||| ||| | ||||| || |||||||||||||||| || || || |||
Sbjct 1135755 GCTTTGCAAAGTCATACGTTTTGTCTTGCT-TTACAAACATGTTCAAGGCGATCGAGGCC 1135813
Query 53717 AGATTACAAACGGCTACCTCATTAGCATC--CGCATATTGTATTATCTCAGTGCAAAGAT 53774
||||| || || |||||||||| | || || || | || || |||||||| | |
Sbjct 1135814 AGATTGCATACCGCTACCTCATC--CTTCGACGAGTACTCTACAATTTCAGTGCACAAGT 1135871
Query 53775 TACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTAT 53834
| ||| |||||||| || | ||| || || ||||| || || || |||||||| |
Sbjct 1135872 TGGAACATTTGATGGTGCCGATATTCTGCTGGTTACTTTTACGATTGCAAGCATCCTTGT 1135931
Query 53835 AAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACAC 53894
| || ||| | || || ||||| | ||| ||||| || ||||| ||| | |
Sbjct 1135932 ACAGCATGTACGGTACGCCGGTTTCCACCTGCGATTCGATGATCGCAAACCACAGATCCT 1135991
Query 53895 GAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCAA 53954
| ||||| | | | | ||| | ||||| || |||| || |
Sbjct 1135992 GCGCCTTCACCTGCCGCATAAAGCGACCCTCTTTCTCGTACCCCGTGTACAGCTTCTCGA 1136051
Query 53955 ACTCGTCTCCCCAAACATTGTCCAAT---CCAGGACATTCATCCGGACACATCAACGACC 54011
|||| || ||||| ||||| || || ||||| || | ||| ||||||| ||
Sbjct 1136052 ACTCTTCGCCCCAGG---TGTCCGATAGCCCGGGACAATCGTGCGGGCACATCAGACTCC 1136108
Query 54012 ACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATA 54071
|| | ||| ||| ||| || | ||| || || || || ||||| || || |||| |
Sbjct 1136109 ACATTTCGTTCGCCTCCACACGCTGCATGAACAGGTCCGGTATCCAGAGTGCG-TAAA-A 1136166
Query 54072 GATCTCTGGTTCTATGT--TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 54129
|| || || | | ||||| || || || || || || |||||||| ||| | |
Sbjct 1136167 CATGTCCCGTGCGCGGACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCGAGAAACTCGAA 1136226
Query 54130 AATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCC 54189
|||||| ||||||||| || | || |||| | |||||||||| ||||| || ||
Sbjct 1136227 TATATCACCATGCCACGGCTCGAGATAGATGGCGAATGCTCCAGGCCGCTTGTTGCCACC 1136286
Query 54190 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 54249
|||||| | ||| | || || || || || || | || ||| || | | ||| || ||
Sbjct 1136287 CTGATCGACGTACCGTGCCGTATTGTTGTAGACGCGCAGCATCGGCACCAGACCGTTCGA 1136346
Query 54250 TGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT-AGAC 54308
|| || || |||||||| || |||| | || || ||| | | | | || |
Sbjct 1136347 AATCCCGTTCGTACCGGAGATGTACGTTCCCTTCGCGCGGATAC-AGTGCACGTTCAGTC 1136405
Query 54309 CTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 54368
| || || || ||| || || |||| || || | || | ||| || ||||||||||
Sbjct 1136406 CGATGCCACCGGCCGACTTTGAAATTAGGGCACACTGCTTCAGCGTGTCGTAGATGCCCT 1136465
Query 54369 CTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTC 54428
| || ||||| || |||| | | || || ||| || | ||| |||| |||
Sbjct 1136466 CAATGCTATCTTCGGACATGGTCAACAGGAAGCAGGACGAAAGCTGGGGACGCTGAGTGG 1136525
Query 54429 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACG 54488
|||| ||| | || || || ||||| ||||| | || || || |||||||| |
Sbjct 1136526 CCGCCGCAAACATAGTTGGCGAGGCGTGGGTAAAGTAACGCTCGGACAGCAGATTGTAGG 1136585
Query 54489 TCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGT 54548
||||||| |||| || || ||| ||| || || | || || ||||| | |||||
Sbjct 1136586 TCTCGATTGCTGCATCGATGTCCTCGCCATGGATGCCAATAGCAACGCGCATCAGCATGT 1136645
Query 54549 GCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTT 54608
|||| || | || ||||| || || || ||||||||||| ||| |||||| ||||
Sbjct 1136646 GCTGGGGGCGCTCGACGATTTTTCCCTTGATCTTCAGCAAGTATGATCGTTCCAAGGTTT 1136705
Query 54609 TAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAG 54663
|||| || ||||||||||| ||||| || |||||||| || | ||||| ||
Sbjct 1136706 TAAAGCCGAAATAGTTGTACCCGAAGTCGCGATCGTAAATGATGGCCGAGTTCAG 1136760
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593643518188080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |