Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21] 10,521 sequences; 224,417,174 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq7526 293 2e-74 seq7521 131 2e-25 seq7535 118 1e-21 seq7517 109 6e-19 >seq7526 Length=6110091 Score = 293 bits (324), Expect = 2e-74 Identities = 326/435 (75%), Gaps = 0/435 (0%) Strand=Plus/Minus Query 116946 TGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCT 117005 |||| || |||||||| ||| |||||||||| || |||||| || ||||||||| || Sbjct 4673379 TGTTCAATGCCATCGAAACGCTGCCGTGCGTGAAGCGGAAGGCGGACTGGGCGCTGAACT 4673320 Query 117006 GGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGG 117065 ||||| | ||| ||||| ||| |||||||| | ||||| ||||| || || |||| Sbjct 4673319 GGATCTCGAGCAAGAAGGCCAACTTTGGCGAGCGGGTCGTGGCATTCGCTGCGGTTGAGG 4673260 Query 117066 GCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGC 117125 | ||||||| || || |||||||| || || ||||| ||||| || ||||| |||| Sbjct 4673259 GTATCTTCTTCAGCGGTAGCTTCGCCGCGATCTTCTGGCTGAAGAAGCGTGGCCTGATGC 4673200 Query 117126 CCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTG 117185 | || || || ||| |||||||| ||||| | ||||| || ||||| |||||||||| Sbjct 4673199 CGGGACTCACCTTCTCGAACGAGCTGATCTCGCGCGACGAAGGGCTGCACTGCGACTTTG 4673140 Query 117186 CCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCG 117245 |||| || |||||||| || |||||||| ||| || |||||| | ||||||| Sbjct 4673139 CCTGCCTGATGTTCAAGTATCTGGTGCAGAAGCCGTCGAAGGAGCGCGTGACGGAGATCA 4673080 Query 117246 TCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGC 117305 || ||| |||||| ||||||||| ||||| || | || ||||||||| | ||| Sbjct 4673079 TCCGCGATGCGGTCCTGATCGAGCAGGAGTTCCTGACGAAGGCACTGCCGGTGGATATGC 4673020 Query 117306 TGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGC 117365 |||| | || || || ||||||||| ||||| ||||| || ||||| | |||||| Sbjct 4673019 TGGGCATGAACTGTGATCTGATGTCGCAGTACATTGAGTTTGTGGCCGATCGTTTGCTGC 4672960 Query 117366 TCGAGCTGGTCGGCG 117380 ||||||||| | ||| Sbjct 4672959 TCGAGCTGGGCTGCG 4672945 Score = 210 bits (232), Expect = 2e-49 Identities = 218/283 (77%), Gaps = 2/283 (1%) Strand=Plus/Minus Query 116655 AGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACT 116714 |||| || || || || ||||| || || ||||| || ||||||||||| | || |||| Sbjct 4673770 AGGCGGAAGCTTCCTTTTGGACGGTGGAAGAGGTTGATCTGTCCAAGGATATGAAGGACT 4673711 Query 116715 GGGAG-CGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCC 116773 ||||| |||| ||| | ||| ||||| ||||| |||||||||||||| || ||| Sbjct 4673710 GGGAGTCGCTGAAACCG-AGCGAACGCCACTTCATTTCCCACGTGCTGGCCTTCTTTGCC 4673652 Query 116774 GCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTG 116833 || |||||| ||||| |||||||||||||| || || ||| |||||||||||||| Sbjct 4673651 GCGTCCGACGGTATCGTGAACGAGAATCTGGTGGAACGCTTCAGCCAGGAGGTGCAGGTT 4673592 Query 116834 GCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATG 116893 | |||||||| |||||||||||||| ||||| || ||||| || |||||| || ||| Sbjct 4673591 ACGGAGGCGCGCTGCTTCTACGGCTTCCAGATTGCGATGGAAAATGTGCACAGCGAGATG 4673532 Query 116894 TATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGA 116936 || ||| || |||||||||||| | ||| ||| | |||| Sbjct 4673531 TACTCGCTGCTGATCGACACGTACATCCGCGACTCGAAAGAGA 4673489 >seq7521 Length=12184106 Score = 131 bits (144), Expect = 2e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| ||||| |||||||| || ||||| ||| | || ||||| || Sbjct 8321115 AAGATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGCCC 8321174 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | || | | | | | |||| || || | ||||| || || ||||| | || Sbjct 8321175 TCGGATACGATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAAGGAATCCCGCCAGAT 8321234 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || || |||| ||| ||||| |||||||| || | ||||| || ||||||| Sbjct 8321235 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACGCTGTCCGACTAC 8321294 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||||| | || || ||||| ||| ||||| || | || || Sbjct 8321295 AACATCCAGAAGGAGTCGACCCTTCATCTGGTGCTGCGCCTGCGCGGTGG 8321344 Score = 122 bits (134), Expect = 9e-23 Identities = 144/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 40685 GAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAG 40744 |||| ||||| || ||||| ||||| ||||| ||||| |||||||| | || ||||| Sbjct 9381350 GAAACATGCAGATTTTCGTGAAAACACTCACCGGCAAGACCATCACACTTGAGGTCGAGC 9381291 Query 40745 CCACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 | | |||| | | | | |||| ||| || | ||||| || ||||| ||| | | Sbjct 9381290 CTTCGGACACGATCGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGCATTCCCCCAG 9381231 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 | ||||| || || |||| ||| ||||| |||||||| || | ||||| ||| ||||| Sbjct 9381230 ATCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACTCTCTCCGACT 9381171 Query 40865 ACAACATCCAGAAGG 40879 ||||||| ||||||| Sbjct 9381170 ACAACATTCAGAAGG 9381156 >seq7535 Length=3646130 Score = 118 bits (130), Expect = 1e-21 Identities = 155/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| || || || || ||||||||| |||| || || |||| | Sbjct 876262 ATGCAGATTTTCGTGAAAACTCTGACCGGAAAGACCATCACCCTCGAGGTTGA-GCCATC 876204 Query 40750 GACAGCG--TGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 | || || || | | |||| || || | ||||| ||||| ||||| | || | Sbjct 876203 GGATACGATTGAGAATG-TGAAGGCGAAGATCCAGGACAAGGAGGGAATCCCGCCAGATC 876145 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| || || |||| ||| || || |||||||| || | |||||||| ||||| | Sbjct 876144 AGCAGCGTCTGATCTTCGCTGGAAAGCAGCTGGAGGATGGCCGCACCCTGTCGGACTATA 876085 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||||| |||| || ||||| || Sbjct 876084 ACATCCAGAAGGAGTCCACCCTTCATCTGGT 876054 Score = 109 bits (120), Expect = 6e-19 Identities = 153/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| || || || || ||||||||| | || || || |||| | Sbjct 876034 ATGCAGATTTTCGTGAAAACTCTGACCGGAAAGACCATCACCCTGGAAGTTGA-GCCATC 875976 Query 40750 GACAGCG--TGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 | || || || | | |||| || || | ||||| ||||| ||||| | || | Sbjct 875975 GGATACGATTGAGAATG-TGAAGGCGAAGATCCAGGACAAGGAGGGAATCCCGCCAGATC 875917 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| || || |||| ||| || || |||||||| || | |||||||| ||||| | Sbjct 875916 AGCAGCGTCTGATCTTCGCCGGAAAGCAGCTGGAGGATGGCCGCACCCTGTCGGACTATA 875857 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||||| | || || ||||| || Sbjct 875856 ACATCCAGAAGGAGTCTACTCTTCATCTGGT 875826 Score = 87.8 bits (96), Expect = 2e-12 Identities = 131/181 (72%), Gaps = 5/181 (3%) Strand=Plus/Minus Query 40720 AAAACCATCACCGTCGACGTCGAAGCCACCGACAGCG--TGCAAACGCTCAAGGAAAAAA 40777 || ||||||||| |||| || || |||| || || || |||| | |||| || | Sbjct 876459 AAGACCATCACC-TCGAAGTTGA-GCCATCGGATACGATTGAGAACG-TGAAGGCGAAGA 876403 Query 40778 TTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGC 40837 | | ||||| ||||| ||||| | || ||||| || || |||| ||| || || |||| Sbjct 876402 TCCAGGACAAGGAGGGAATCCCGCCAGATCAGCAGCGTCTGATCTTCGCTGGAAAGCAGC 876343 Query 40838 TGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAG 40897 |||| || | |||||||| ||||| |||||||||||||| | || || ||||| | Sbjct 876342 TGGAGGATGGCCGCACCCTGTCGGACTATAACATCCAGAAGGAATCGACCCTTCATCTGG 876283 Query 40898 T 40898 | Sbjct 876282 T 876282 >seq7517 Length=11427604 Score = 109 bits (120), Expect = 6e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || ||||| |||||||| | || ||||| | | Sbjct 2898284 ATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACGCTGGAGGTCGAGCCGTCG 2898343 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| || || | ||||| |||||||| || | || || Sbjct 2898344 GACACGATCGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCAGATCA 2898402 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||| || || |||||||| |||| || || || ||||||||| Sbjct 2898403 GCAGCGTTTGATCTTCGCCGGTAAGCAGCTGGAAGACGGACGTACTCTGTCCGACTACAA 2898462 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||| | || |||| Sbjct 2898463 CATCCAGAAGGAGTCGACCTTGCA 2898486 Score = 109 bits (120), Expect = 6e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || ||||| |||||||| | || ||||| | | Sbjct 2898512 ATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACGCTGGAGGTCGAGCCGTCG 2898571 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| || || | ||||| |||||||| || | || || Sbjct 2898572 GACACGATCGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCAGATCA 2898630 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||| || || |||||||| |||| || ||| | ||||||||| Sbjct 2898631 GCAGCGTTTGATCTTCGCCGGTAAGCAGCTGGAAGACGGACGTACCTTGTCCGACTACAA 2898690 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||| | || |||| Sbjct 2898691 CATCCAGAAGGAGTCGACCTTGCA 2898714 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || ||||| |||||||| | || ||||| | | Sbjct 2898740 ATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACGCTGGAGGTCGAGCCGTCG 2898799 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| || || | ||||| |||||||| || | || || Sbjct 2898800 GACACGATCGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCAGATCA 2898858 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||| || || |||||||| |||| || ||| | ||||||||| Sbjct 2898859 GCAGCGTTTGATCTTCGCCGGTAAGCAGCTGGAAGACGGACGTACCTTGTCCGACTACAA 2898918 Query 40869 CATCCAGAAGGAG 40881 ||||||||||||| Sbjct 2898919 CATCCAGAAGGAG 2898931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515151442234960