Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21]
10,521 sequences; 224,417,174 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq7552 190 2e-43
seq7521 125 6e-24
seq7535 122 8e-23
seq7517 116 3e-21
>seq7552
Length=2500597
Score = 190 bits (210), Expect = 2e-43
Identities = 533/810 (66%), Gaps = 46/810 (6%)
Strand=Plus/Plus
Query 133215 AGATACTGGTTGACCACTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCGAC 133274
|||| ||||| ||||| || |||||||| | || ||||| || || || ||||||
Sbjct 1135229 AGATGATGGTTCACCACCTGGAACTCGCCCGACAGCACGCGCCTATTGTAAACGTTCGAC 1135288
Query 133275 GTGAACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATG 133334
||| |||| ||||| ||||| ||||||||||| || || ||||| | ||||| |||||
Sbjct 1135289 GTGTACGGCTCGAACGATTCATTGTTGCCGAGAATTTGTGCCGTGGAAGCCGTCGGCATC 1135348
Query 133335 TACGCCACCAACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCAATTCGTTC 133394
|||| || || || || | | ||||| |||| || || || ||| ||| |
Sbjct 1135349 GGGGCCAACAGCAGCGAATTGCGAATGCCGTGCTTGGCGATCTTTTCCTTCAACTCGGCC 1135408
Query 133395 CAGTCCCACAGATTGTTGGAATGATAGACGCCGTTCTCGTCGTCGTAGTTGTGAAAATGC 133454
|||| |||||||| || || | || | || | | | | |||
Sbjct 1135409 CAGTTCCACAGAT--------------CCGTCGGT-TCCTTGTTCCACATCTCGTACTGC 1135453
Query 133455 AAAATACCCCTGCTCACCGGACTGTCCGTGTACGATTCATAGGGTCCGTTGATTTTGGCC 133514
|| || ||| |||||||||||||| || ||||| || || || || | ||||
Sbjct 1135454 AAGATGCCCTTGCTCACCGGACTGCCCTCGTACGTCTCGTACGGACCATCTCGAGCGGCC 1135513
Query 133515 AGCTCGCAGCTAGCCTCCAAAGCGGCAAAGTAAATGGTTTCCGCGATTGAATAGTTGACG 133574
| ||| ||||| || |||| ||| | |||| |||||||| ||||| ||| |
Sbjct 1135514 AACTCACAGCTCGCTTCCAGCGCGCCGTAGTAGATGGTTTC-------GAATATTTGCTG 1135566
Query 133575 A---ACCT----GGCATCGTCGCTATCGTAGGCGATGTCG-AGAAGAACAAACGCGTCGG 133626
| | || || || ||||| ||||| | ||| || | || | ||||| ||||
Sbjct 1135567 ATTTAGCTTTTGAGCCTCTTCGCTTTCGTACG-GATAGCGCATCAGGATGAACGCATCGG 1135625
Query 133627 CCAAACCCTGTATGCCGACGCCGATGGGTCGATGTTTTTTATTGCTCCTCTCCGACTCGG 133686
||| ||||| | ||||| ||||| || | || ||||| | || | ||| |
Sbjct 1135626 CCATGCCCTGCACGCCGATCCCGATCGGCCTGTGGCGCATATTGGAGCGCTTAGCCTCCG 1135685
Query 133687 CCGTGGGATAGTGGTTGACGTCGATGATCTTGTTGAGATTGCGGACGATA--ATTTTAGT 133744
| |||||||| ||||| || ||||| ||||| |||||||| || || | ||||
Sbjct 1135686 GCACGGGATAGTAATTGACATCAATGATTTTGTTCAGATTGCG--CGTTACGGTCTTAGC 1135743
Query 133745 CAAATGTTTCAGCAAAACATAGTCAAATGTCTTGGCGTCGACGTCGACGCACTTGTTGAC 133804
| | |||||| || ||||| | || || ||| | || || |||| |
Sbjct 1135744 GACTTCCTTCAGCTTTGCAAAGTCATACGTTTT---GTCTTGCTTTACAAACATGTTCAA 1135800
Query 133805 GGCAATACTGGCTAGATTACAAACGGCCGTCTCGTTC-TCGTCGCAATACTGGACGATCT 133863
||| || ||| ||||| || || || ||| | | ||| || | |||| || || |
Sbjct 1135801 GGCGATCGAGGCCAGATTGCATACCGCTACCTCATCCTTCGACG-AGTACTCTACAATTT 1135859
Query 133864 CGGCGCAGAGGTTGCTGCATTTGATGGTGCCCAAAtttttttGATTGCTAAAGTTATTGC 133923
| | ||| | |||| |||||||||||||| | ||| | || || || |||||
Sbjct 1135860 CAGTGCACAAGTTGGAACATTTGATGGTGCCGATATTCTGCTGGTTACTTTTACGATTGC 1135919
Query 133924 AATGATCCTTGTATAGCATGTACGGCCCGCCGGTTTCGACGTTGGTCTCGACGAT---AA 133980
|| ||||||||| ||||||||||| |||||||||| || | | |||| ||| ||
Sbjct 1135920 AAGCATCCTTGTACAGCATGTACGGTACGCCGGTTTCCACCTGCGATTCGATGATCGCAA 1135979
Query 133981 ATCTAAACAAGTCTCTCGCCTTCACCTGCC 134010
| | ||| || ||||||||||||||
Sbjct 1135980 ACC---ACAGATCCTGCGCCTTCACCTGCC 1136006
>seq7521
Length=12184106
Score = 125 bits (138), Expect = 6e-24
Identities = 141/189 (75%), Gaps = 0/189 (0%)
Strand=Plus/Plus
Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610
|| ||||||||||| ||| | |||||| |||||| ||||| || || ||| ||||
Sbjct 9381158 TTCTGAATGTTGTAGTCGGAGAGAGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATC 9381217
Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670
|||||||||||||| || || ||||| |||||||| || ||| || || | |||
Sbjct 9381218 AGACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCG 9381277
Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730
| ||||||| ||||||||| | || | || |||||||| || ||||| || |||
Sbjct 9381278 ATCGTGTCCGAAGGCTCGACCTCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAA 9381337
Query 118731 ATCTGCATG 118739
|||||||||
Sbjct 9381338 ATCTGCATG 9381346
Score = 114 bits (126), Expect = 1e-20
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570
||| ||||| | | || ||||| || | || ||||| || || |||||||| |||
Sbjct 8321345 ACCACCGCGCAGGCGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 8321286
Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630
|| ||||| |||||| ||||| || || ||| |||| |||||||||||||| || ||
Sbjct 8321285 CAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGG 8321226
Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690
|| || |||||||| || || || || | |||| || |||| | ||||||
Sbjct 8321225 GATTCCTTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGAC 8321166
Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||| | ||| | || || || || || ||||| || || ||||||||
Sbjct 8321165 CTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 8321118
>seq7535
Length=3646130
Score = 122 bits (134), Expect = 8e-23
Identities = 145/197 (74%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
|| ||||| || || ||||| || || || ||||| |||||| ||||| ||||||
Sbjct 876066 GTGGACTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCCTCCAGCTGCTTTCCA 876125
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661
||| |||| |||||||||||||| || || || ||||||||||| || || ||
Sbjct 876126 GCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGGATCTTCGCCTTC 876185
Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721
|| | || | || |||| ||| ||||||| ||| | || || ||||||||||||
Sbjct 876186 ACATTCTCAATCGTATCCGATGGCTCAACCTCGAGGGTGATGGTCTTTCCGGTCAGAGTT 876245
Query 118722 TTTACAAAAATCTGCAT 118738
|| || |||||||||||
Sbjct 876246 TTCACGAAAATCTGCAT 876262
Score = 113 bits (124), Expect = 4e-20
Identities = 143/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
|||||||| || || ||||| || || || ||||| |||||| ||||| |||||
Sbjct 875838 GTAGACTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCCTCCAGCTGCTTTCCG 875897
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661
||| |||| |||||||||||||| || || || ||||||||||| || || ||
Sbjct 875898 GCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGGATCTTCGCCTTC 875957
Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721
|| | || | || |||| ||| || || | ||| | || || ||||||||||||
Sbjct 875958 ACATTCTCAATCGTATCCGATGGCTCAACTTCCAGGGTGATGGTCTTTCCGGTCAGAGTT 876017
Query 118722 TTTACAAAAATCTGCAT 118738
|| || |||||||||||
Sbjct 876018 TTCACGAAAATCTGCAT 876034
Score = 84.2 bits (92), Expect = 2e-11
Identities = 81/104 (78%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
|| || || || || ||||| || || || ||||| |||||| ||||| ||||||
Sbjct 876294 GTCGATTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCCTCCAGCTGCTTTCCA 876353
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645
||| |||| |||||||||||||| || || || |||||||||||
Sbjct 876354 GCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTC 876397
>seq7517
Length=11427604
Score = 116 bits (128), Expect = 3e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||||||| | || ||||| || || |||||||| ||| || ||| || || ||
Sbjct 2898492 ACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGTCCGTCTTCC 2898433
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
||||| || || ||| |||| | |||||||||||| ||||| ||||||||||||||
Sbjct 2898432 AGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGG 2898373
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || || || | |||| ||||||| ||||||||| | || | || |||
Sbjct 2898372 ATCTTGGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTCTTG 2898313
Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| ||||| || || || || ||||||||
Sbjct 2898312 CCAGTCAGCGTCTTCACGAAGATCTGCAT 2898284
Score = 113 bits (124), Expect = 4e-20
Identities = 151/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||||||| | || ||||| || || |||||||| ||| || || || || ||
Sbjct 2898720 ACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCCGTCTTCC 2898661
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
||||| || || ||| |||| | |||||||||||| ||||| ||||||||||||||
Sbjct 2898660 AGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGG 2898601
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || || || | |||| ||||||| ||||||||| | || | || |||
Sbjct 2898600 ATCTTGGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTCTTG 2898541
Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739
|| ||||| || || || || |||||||||
Sbjct 2898540 CCAGTCAGCGTCTTCACGAAGATCTGCATG 2898511
Score = 105 bits (116), Expect = 6e-18
Identities = 142/198 (72%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
|| ||||| || || |||||||| ||| || || || || || ||||| || ||
Sbjct 2898936 GTCGACTCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCCGTCTTCCAGCTGCTTACCG 2898877
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661
||| |||| | |||||||||||| ||||| |||||||||||||| || || ||
Sbjct 2898876 GCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTC 2898817
Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721
|| | |||| ||||||| ||||||||| | || | || ||||| ||||| ||
Sbjct 2898816 ACGTTCTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTCTTGCCAGTCAGCGTC 2898757
Query 118722 TTTACAAAAATCTGCATG 118739
|| || || |||||||||
Sbjct 2898756 TTCACGAAGATCTGCATG 2898739
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433774772232532
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