Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21]
10,521 sequences; 224,417,174 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq7517 120 3e-22
seq9468 109 6e-19
seq7535 104 3e-17
seq7578 98.7 1e-15
seq8650 96.9 4e-15
seq7566 96.9 4e-15
seq7527 96.9 4e-15
seq7523 96.9 4e-15
seq7562 95.1 1e-14
>seq7517
Length=11427604
Score = 120 bits (132), Expect = 3e-22
Identities = 152/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034
||||| ||||| || |||||| || || ||||| || | |||||| || |||| ||
Sbjct 2898492 ACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGTCCGTCTTCC 2898433
Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094
||||||||||| ||||| || | |||||||| || | || | || |||||||||| |
Sbjct 2898432 AGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGG 2898373
Query 43095 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 43154
|| || || | || | | |||||| || || || || | ||||||||| |||
Sbjct 2898372 ATCTTGGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTCTTG 2898313
Query 43155 CCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|| || |||||||| || ||||| |||||
Sbjct 2898312 CCAGTCAGCGTCTTCACGAAGATCTGCAT 2898284
Score = 111 bits (122), Expect = 2e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034
||||| ||||| || |||||| || || ||||| || | || || || |||| ||
Sbjct 2898720 ACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCCGTCTTCC 2898661
Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094
||||||||||| ||||| || | |||||||| || | || | || |||||||||| |
Sbjct 2898660 AGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGG 2898601
Query 43095 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 43154
|| || || | || | | |||||| || || || || | ||||||||| |||
Sbjct 2898600 ATCTTGGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTCTTG 2898541
Query 43155 CCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|| || |||||||| || ||||| |||||
Sbjct 2898540 CCAGTCAGCGTCTTCACGAAGATCTGCAT 2898512
Score = 104 bits (114), Expect = 3e-17
Identities = 138/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || || ||||| || | || || || |||| || ||||||||||| |||||
Sbjct 2898931 CTCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCCGTCTTCCAGCTGCTTACCGGCGAA 2898872
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
|| | |||||||| || | || | || |||||||||| ||| || || | |
Sbjct 2898871 GATCAAACGCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTT 2898812
Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171
| | | |||||| || || || || | ||||||||| ||||| || |||||||| ||
Sbjct 2898811 CTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTCTTGCCAGTCAGCGTCTTCAC 2898752
Query 43172 AAAGATTTGCAT 43183
||||| |||||
Sbjct 2898751 GAAGATCTGCAT 2898740
>seq9468
Length=22518
Score = 109 bits (120), Expect = 6e-19
Identities = 89/107 (83%), Gaps = 6/107 (6%)
Strand=Plus/Minus
Query 60037 ACAACAAATTA-ACGTTTATGAAA-----AATTTTCTCCTCGGCAGGGAATCGAACCCTG 60090
|||||||||| | ||||| ||| |||||||||| || | ||||||||||||| |
Sbjct 12810 ACAACAAATTCTATATTTATAAAATAAACAATTTTCTCCCCGACGGGGAATCGAACCCCG 12751
Query 60091 GTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 60137
|||||||||||||||||||| ||||| |||||||||||| ||||||
Sbjct 12750 GTCTCCCGCGTGACAGGCGGGGATACTGACCACTATACTATCGAGGA 12704
Score = 104 bits (114), Expect = 3e-17
Identities = 71/80 (89%), Gaps = 0/80 (0%)
Strand=Plus/Minus
Query 60059 AAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTC 60118
|||| |||||| || | ||||||||||||| ||||||||||||||||||||| |||||
Sbjct 11058 AAATATTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTG 10999
Query 60119 ACCACTATACTACCGAGGAT 60138
|||||||||||| |||||||
Sbjct 10998 ACCACTATACTATCGAGGAT 10979
Score = 98.7 bits (108), Expect = 1e-15
Identities = 72/83 (87%), Gaps = 3/83 (4%)
Strand=Plus/Minus
Query 60059 AAATTTTCTCCTC---GGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115
||| ||||||||| | | ||||||||||||| ||||||||||||||||||||| |||
Sbjct 14075 AAAATTTCTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 14016
Query 60116 CTCACCACTATACTACCGAGGAT 60138
|| |||||||||||| |||||||
Sbjct 14015 CTGACCACTATACTATCGAGGAT 13993
>seq7535
Length=3646130
Score = 104 bits (114), Expect = 3e-17
Identities = 69/77 (90%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121
|||||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||
Sbjct 1756244 TTTTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACC 1756185
Query 60122 ACTATACTACCGAGGAT 60138
||||||||| |||||||
Sbjct 1756184 ACTATACTATCGAGGAT 1756168
Score = 100 bits (110), Expect = 3e-16
Identities = 75/86 (87%), Gaps = 4/86 (5%)
Strand=Plus/Plus
Query 60057 AAAAAT-TTTCTCCTC---GGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGAC 60112
|||||| ||||||||| | | ||||||||||||| |||||||||||||||||||||
Sbjct 1755942 AAAAATATTTCTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGG 1756001
Query 60113 ATACTCACCACTATACTACCGAGGAT 60138
||||| |||||||||||| |||||||
Sbjct 1756002 ATACTGACCACTATACTATCGAGGAT 1756027
Score = 96.9 bits (106), Expect = 4e-15
Identities = 69/78 (88%), Gaps = 1/78 (1%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 1756707 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 1756648
Query 60126 TACTACCGAGGA-TTGAA 60142
||||| |||||| |||||
Sbjct 1756647 TACTATCGAGGACTTGAA 1756630
Score = 95.1 bits (104), Expect = 1e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 2541010 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 2541069
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 2541070 TACTATCGAGGA 2541081
>seq7578
Length=2134778
Score = 98.7 bits (108), Expect = 1e-15
Identities = 74/86 (86%), Gaps = 2/86 (2%)
Strand=Plus/Minus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 773332 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 773273
Query 60125 ATACTACCGAGGA--TTGAATATATA 60148
|||||| |||||| |||| ||| ||
Sbjct 773272 ATACTATCGAGGAAGTTGATTATTTA 773247
Score = 98.7 bits (108), Expect = 1e-15
Identities = 78/93 (84%), Gaps = 2/93 (2%)
Strand=Plus/Minus
Query 60052 TTATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGA 60111
|||| ||| | | |||| || | ||||||||||||| |||||||||||||||||||||
Sbjct 774280 TTATAAAATCTCTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGG 774221
Query 60112 CATACTCACCACTATACTACCGAGGA--TTGAA 60142
||||| |||||||||||| |||||| |||||
Sbjct 774220 GATACTGACCACTATACTATCGAGGACGTTGAA 774188
Score = 95.1 bits (104), Expect = 1e-14
Identities = 68/77 (88%), Gaps = 1/77 (1%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 770905 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 770846
Query 60126 TACTACCGAGG-ATTGA 60141
||||| ||||| |||||
Sbjct 770845 TACTATCGAGGAATTGA 770829
Score = 95.1 bits (104), Expect = 1e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 775175 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 775116
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 775115 TACTATCGAGGA 775104
Score = 93.3 bits (102), Expect = 5e-14
Identities = 65/74 (88%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123
|||||| | | ||||||||||||| ||||||||||||||||||||| ||||| |||||
Sbjct 771774 TTCTCCCAGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCAC 771715
Query 60124 TATACTACCGAGGA 60137
||||||| ||||||
Sbjct 771714 TATACTATCGAGGA 771701
>seq8650
Length=272343
Score = 96.9 bits (106), Expect = 4e-15
Identities = 65/73 (89%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 178173 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 178232
Query 60125 ATACTACCGAGGA 60137
|||||| ||||||
Sbjct 178233 ATACTATCGAGGA 178245
>seq7566
Length=960142
Score = 96.9 bits (106), Expect = 4e-15
Identities = 65/73 (89%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 49864 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 49923
Query 60125 ATACTACCGAGGA 60137
|||||| ||||||
Sbjct 49924 ATACTATCGAGGA 49936
>seq7527
Length=9476429
Score = 96.9 bits (106), Expect = 4e-15
Identities = 65/73 (89%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 8622983 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 8622924
Query 60125 ATACTACCGAGGA 60137
|||||| ||||||
Sbjct 8622923 ATACTATCGAGGA 8622911
Score = 95.1 bits (104), Expect = 1e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 5873629 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 5873688
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 5873689 TACTATCGAGGA 5873700
>seq7523
Length=5043705
Score = 96.9 bits (106), Expect = 4e-15
Identities = 67/76 (88%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121
||| |||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||
Sbjct 4785724 TTTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACC 4785783
Query 60122 ACTATACTACCGAGGA 60137
||||||||| ||||||
Sbjct 4785784 ACTATACTATCGAGGA 4785799
>seq7562
Length=1026670
Score = 95.1 bits (104), Expect = 1e-14
Identities = 66/75 (88%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122
|| |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||
Sbjct 899660 TTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCA 899601
Query 60123 CTATACTACCGAGGA 60137
|||||||| ||||||
Sbjct 899600 CTATACTATCGAGGA 899586
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571742398837880
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