Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21] 10,521 sequences; 224,417,174 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq7552 888 0.0 seq7526 181 9e-41 seq7535 111 1e-19 seq7521 98.7 9e-16 >seq7552 Length=2500597 Score = 888 bits (984), Expect = 0.0 Identities = 1369/1949 (70%), Gaps = 33/1949 (2%) Strand=Plus/Plus Query 22103 GTCTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATG 22162 ||||||||||| |||||||| || || ||| ||||||| ||||| || ||||| |||||| Sbjct 1134887 GTCTTGTCCACCGTAAACTGGATCGCATTTACGGCCGGCTTGGTACGCAGATAGTACATG 1134946 Query 22163 CCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTC 22222 || || |||| ||||||||||| | || ||||| |||||||||| || ||||| | Sbjct 1134947 CCAGTTTTCAACCCCATCTTCCAGCCATAGAAATGGATCGACGTCAGCTTGCCATAGTTT 1135006 Query 22223 GGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCG 22282 ||| | | || | |||||||| || ||||||||||||||| || ||||| ||| Sbjct 1135007 GGCTCCGCGACGTGAATGTTGAACGATTGCGACTGATCGATAAACGCGCCACGATCTGCG 1135066 Query 22283 GCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATC 22342 ||||| || || | || || ||| || |||||||| || |||||||| | | || Sbjct 1135067 GCCATTTTGATGCACGTTTTCACCGAGATCTCCCATACCGTTTTGTACAGATCGCGAATT 1135126 Query 22343 TCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTT--T 22400 || |||||| | | ||| | |||| || || || ||| || ||||| | Sbjct 1135127 TCCTGCGGTATAGCCGCAATCTTTTGGATCGATCCATTGTTG-----GACAGAATTTCGT 1135181 Query 22401 TAATCGTATCG---TTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCA 22457 | || | ||| | ||||| ||| ||| ||||||||| | | |||||| |||||| Sbjct 1135182 TCTTCATGTCGAGATCCCACAGACCCATGTTGGTCAAATCCTGCAGAAGATGATGGTTCA 1135241 Query 22458 CCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGA 22517 |||| || |||||||| |||| ||||| | | ||||| ||| || ||| |||| |||| Sbjct 1135242 CCACCTGGAACTCGCCCGACAGCACGCGCCTATTGTAAACGTTCGACGTGTACGGCTCGA 1135301 Query 22518 AAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTA 22577 | ||||||||||| || || || || || || ||||| ||||||||||| |||||||| | Sbjct 1135302 ACGATTCATTGTTGCCGAGAATTTGTGCCGTGGAAGCCGTCGGCATCGGGGCCAACAGCA 1135361 Query 22578 GCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGAT 22637 |||| || | | ||||||||| | || || ||| | | | ||||| |||||||| Sbjct 1135362 GCGAATTGCGAATGCCGTGCTTGGCGATCTTTTCCTTCAACTCGGCCCAGTTCCACAGAT 1135421 Query 22638 CGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGC 22697 | || || | |||| |||||| ||||| ||||| | ||| ||| |||| |||| Sbjct 1135422 C---CGTCGGTTCCTTGTTCCACATCTCGTACTGCAAGATGCCCTTGCTCACCGGACTGC 1135478 Query 22698 CTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGC 22757 | |||||||| ||||||||||||| | ||||| | || |||||||| |||| ||||| Sbjct 1135479 CCTCGTACGTCTCGTACGGACCATCTCGAGCGGCCAACTCACAGCTCGCTTCCAGCGCGC 1135538 Query 22758 CGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTTTCGTACG 22817 |||| || || || ||||| |||| || || | | || | |||||||||||| Sbjct 1135539 CGTAGTAGATGGTTTCGAATATTTGCTGATTTAGCTTTTGAGCCTCTTCGCTTTCGTACG 1135598 Query 22818 GCATA-CGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGG 22876 | ||| ||||||| | |||||| || ||||| ||||| ||||| || |||||||| | | Sbjct 1135599 G-ATAGCGCATCAGGATGAACGCATCGGCCATGCCCTGCACGCCGATCCCGATCGGCCTG 1135657 Query 22877 TTTTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTG 22936 | || ||| || || ||||| |||| ||||| |||| ||| || || || Sbjct 1135658 TGGCGCATATTGGAGCGCTTAGCCTCCGGCACGGGATAGTAATTGACATCAATGATTTTG 1135717 Query 22937 TTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCC 22996 |||| || | || || | || | | ||||||| || Sbjct 1135718 TTCAGATTGCGCGTTACGGTCTTAGCGACTTCCTTCAGCTTTGCAAAGTCATACGTTTTG 1135777 Query 22997 GATTGTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCT 23056 ||| |||||| |||| | |||||||||||| ||||||||||| || ||||| || Sbjct 1135778 TCTTGCTTTACAAACATGTTCAAGGCGATCGAGGCCAGATTGCATACCGCTACCTCATCC 1135837 Query 23057 TTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTG 23116 || |||| ||||||||||||||| || || | ||| ||| || || ||||| | ||| Sbjct 1135838 TTCGACGAGTACTCTACAATTTCAGTGCACAAGTTGGAACATTTGATGGTGCCGATATTC 1135897 Query 23117 CTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCG 23176 |||||| ||||| |||||||| | ||||||||| ||||||||||| ||| || || Sbjct 1135898 TGCTGGTTACTTTTACGATTGCAAGCATCCTTGTACAGCATGTACGGTACGCCGGTTTCC 1135957 Query 23177 ACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTACCTG 23236 |||||||| ||||||||||| ||||| | ||| || | || | |||| | | Sbjct 1135958 ACCTGCGATTCGATGATCGCAAACCACAGATCCTGCGCCTTCACCTGCCGCATAAAGCGA 1136017 Query 23237 CCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGG 23296 || |||| ||||||| ||||| | || || || | || | ||| | || Sbjct 1136018 CCCTCTTTCTCGTACCCCGTGTACAGCTTCTCGAACTCTTCGCCCCAGGTGTCCGATAGC 1136077 Query 23297 CCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATA 23356 ||||| | | ||| ||||| |||||||||||| || || || || ||| Sbjct 1136078 CCGGGACAATCGTGCGGGCACATCAGACTCCACATTTCGTTCGCCTCCACACGCTGCATG 1136137 Query 23357 AAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCG 23416 || || ||||||||||| || ||||| |||| || || ||||| |||||||| |||||| Sbjct 1136138 AACAGGTCCGGTATCCAGAGTGCGTAAAACATGTCCCGTGCGCGGACCTCCTCCTTGCCG 1136197 Query 23417 GTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACG 23476 ||||| || |||| ||| | ||| || || | || |||||||||||||||| || | | Sbjct 1136198 GTGTTTTTCTTCAGATCGAGAAACTCGAATATATCACCATGCCACGGCTCGAGATAGATG 1136257 Query 23477 GCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTAC 23536 || || || || || | ||| ||||| |||||||||||||| || ||||| |||||||| Sbjct 1136258 GCGAATGCTCCAGGCCGCTTGTTGCCACCCTGATCGACGTACCGTGCCGTATTGTTGTAG 1136317 Query 23537 ACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCG--CCTACGCCCGCCACACTCGAAC 23594 || | ||||||||||| |||||||| || ||| | || || | | || | Sbjct 1136318 ACGCGCAGCATCGGCACCAGACCGTTCGAAATCCCGTTCGTA--CCGGAGATGTACGTTC 1136375 Query 23595 CTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCG 23654 | || || || | ||| |||| | || ||||| ||| |||| || || || | | Sbjct 1136376 CCTTCGCGCGGATACAGTGCACGTTCAGTCCGATGCCACCGGCCGACTTTGAAATTAGGG 1136435 Query 23655 CGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTC---TTTGGTCGCGACCA 23711 | || || ||||| ||||||||||||||||| ||||| || || ||||| | || Sbjct 1136436 CACACTGCTTCAGCGTGTCGTAGATGCCCTCAATGCTATCTTCGGACATGGTC---AACA 1136492 Query 23712 AGAAACACGAAGACATTTG----CGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTG 23767 ||| || || || | || |||| | || || |||| |||| || || | Sbjct 1136493 GGAAGCAGGACGAAAGCTGGGGACGCT----GAGTGGCCGCCGCAAACATAGTTGGCGAG 1136548 Query 23768 GCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCC 23827 ||||| |||||||| | | |||| |||||||| || ||||| || ||||| |||||| Sbjct 1136549 GCGTGGGTAAAGTAACGCTCGGACAGCAGATTGTAGGTCTCGATTGCTGCATCGATGTCC 1136608 Query 23828 TCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACG 23887 || || || || || || || |||||||||| ||||| || || | |||||| | Sbjct 1136609 TCGCCATGGATGCCAATAGCAACGCGCATCAGCATGTGCTGGGGGCGCTCGACGATTTTT 1136668 Query 23888 CCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTA 23947 || || || || | || ||||| |||| || |||||||| || ||||||| || Sbjct 1136669 CCCTTGATCTTCAGCAAGTATGATCGTTCCAAGGTTTTAAAGCCGAAATAGTTGTACCCG 1136728 Query 23948 AAGTCACGATCGTGCACTATGGCCGAATTCAAACGGTACGCATTGGCAGCGATGATGTTG 24007 ||||| ||||||| | |||||||| |||| |||| || || | || | ||| Sbjct 1136729 AAGTCGCGATCGTAAATGATGGCCGAGTTCAGCCGGTCGGCGTTATCCATTATCACCTTG 1136788 Query 24008 TAATGAAAATTCGATATCATCGGCGTTTT 24036 |||||||| | ||| ||||| || | ||| Sbjct 1136789 TAATGAAAGTCCGAGATCATGGGAGATTT 1136817 >seq7526 Length=6110091 Score = 181 bits (200), Expect = 9e-41 Identities = 300/432 (69%), Gaps = 6/432 (1%) Strand=Plus/Minus Query 57879 CTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAG---AAGGCAGAGTGGTCAATC 57935 |||||||| || |||||||| |||| | || ||| ||||| || ||| | | Sbjct 4673380 CTGTTCAATGCCATCGAAACGCTGCC---GTGCGTGAAGCGGAAGGCGGACTGGGCGCTG 4673324 Query 57936 AAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTC 57995 || ||||| ||| | ||||| || | |||| || | | || ||||| || || Sbjct 4673323 AACTGGATCTCGAGCAAGAAGGCCAACTTTGGCGAGCGGGTCGTGGCATTCGCTGCGGTT 4673264 Query 57996 GAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTG 58055 || ||||| ||||| || ||||| || || || || ||| ||||||| || |||||| Sbjct 4673263 GAGGGTATCTTCTTCAGCGGTAGCTTCGCCGCGATCTTCTGGCTGAAGAAGCGTGGCCTG 4673204 Query 58056 ATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGAT 58115 ||||| || || || || |||||| |||| ||||||||||| || || || || Sbjct 4673203 ATGCCGGGACTCACCTTCTCGAACGAGCTGATCTCGCGCGACGAAGGGCTGCACTGCGAC 4673144 Query 58116 TTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGCGGGATCGCATCTTGGAC 58175 ||||| ||||| |||| | | | || | || ||| || ||| ||| | ||| Sbjct 4673143 TTTGCCTGCCTGATGTTCAAGTATCTGGTGCAGAAGCCGTCGAAGGAGCGCGTGACGGAG 4673084 Query 58176 ATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCC 58235 || ||| ||| |||||| |||||| | ||||| | || | || || ||||||| Sbjct 4673083 ATCATCCGCGATGCGGTCCTGATCGAGCAGGAGTTCCTGACGAAGGCACTGCCGGTGGAT 4673024 Query 58236 ATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTT 58295 ||||| || |||||| |||| ||||||| |||||||||||||||| ||||| | | Sbjct 4673023 ATGCTGGGCATGAACTGTGATCTGATGTCGCAGTACATTGAGTTTGTGGCCGATCGTTTG 4672964 Query 58296 TTGCTCGAACTG 58307 ||||||| ||| Sbjct 4672963 CTGCTCGAGCTG 4672952 >seq7535 Length=3646130 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| || |||||||| || || || |||||| |||| ||||| || || Sbjct 876262 ATGCAGATTTTCGTGAAAACTCTGACCGGAAAGACCATCACCCTCGAGGTTGAGCCATCG 876203 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | || || || || ||||||||| || | ||||| || ||| Sbjct 876202 GATACGATTGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGAATCCCGCCAGATCAG 876143 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || |||||||| || ||| |||| || || || || |||||| Sbjct 876142 CAGCGTCTGATCTTCGCTGGAAAGCAGCTGGAGGATGGCCGCACCCTGTCGGACTATAAC 876083 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || || || ||||||||||| || | ||| | || |||| Sbjct 876082 ATCCAGAAGGAGTCCACCCTTCATCTGGTTCTCCGTCTGCGTGGTGGTA 876034 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| || |||||||| || || || |||||| | || ||||| || || Sbjct 876034 ATGCAGATTTTCGTGAAAACTCTGACCGGAAAGACCATCACCCTGGAAGTTGAGCCATCG 875975 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | || || || || ||||||||| || | ||||| || ||| Sbjct 875974 GATACGATTGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGAATCCCGCCAGATCAG 875915 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || ||||| || || ||| |||| || || || || |||||| Sbjct 875914 CAGCGTCTGATCTTCGCCGGAAAGCAGCTGGAGGATGGCCGCACCCTGTCGGACTATAAC 875855 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || || || || || |||||||||||||| ||| | ||| | || || Sbjct 875854 ATCCAGAAGGAGTCTACTCTTCATCTGGTTCTTCGTCTGCGTGGTGG 875808 Score = 86.0 bits (94), Expect = 6e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 31285 GGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGA 31344 ||||||||| || | ||||| || ||||||||||| || |||||||| || ||| |||| Sbjct 876398 GGACAAGGAGGGAATCCCGCCAGATCAGCAGCGTCTGATCTTCGCTGGAAAGCAGCTGGA 876339 Query 31345 AGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || || |||||||| || || |||||||| ||||||||||| || Sbjct 876338 GGATGGCCGCACCCTGTCGGACTATAACATCCAGAAGGAATCGACCCTTCATCTGGTTCT 876279 Query 31405 TAGACTGAGGGGCGGTA 31421 | ||| | || |||| Sbjct 876278 CCGTCTGCGTGGTGGTA 876262 >seq7521 Length=12184106 Score = 98.7 bits (108), Expect = 9e-16 Identities = 167/242 (69%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| || || || || || || || || ||| | || || || || Sbjct 8321115 AAGATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGCCC 8321174 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | |||| | || || || || |||||||||||| | ||||| || Sbjct 8321175 TCGGATACGATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAAGGAATCCCGCCAGAT 8321234 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||||||||| || ||||| ||||| ||| |||| || || || ||| || Sbjct 8321235 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACGCTGTCCGACTAC 8321294 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT----AGAAG 31425 ||||| || || || ||||| ||||||||||| || | ||| | || ||| ||||| Sbjct 8321295 AACATCCAGAAGGAGTCGACCCTTCATCTGGTGCTGCGCCTGCGCGGTGGTGCCAAGAAG 8321354 Query 31426 CG 31427 || Sbjct 8321355 CG 8321356 Score = 98.7 bits (108), Expect = 9e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||||||||| |||||||| || || || || ||||| || ||||| | || || || || Sbjct 9381349 AAACATGCAGATTTTCGTGAAAACACTCACCGGCAAGACCATCACACTTGAGGTCGAGCC 9381290 Query 31249 GTCCGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 || |||| |||| | || || || ||| | ||||||||||||| | || || | Sbjct 9381289 TTCGGACACGATCGAGAATGTGAAGGCAAAGA-TCCAGGACAAGGAAGGCATTCCCCCAG 9381231 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 | ||||||||||| || ||||| ||||| ||| |||| || | ||| | ||| | Sbjct 9381230 ATCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACTCTCTCCGACT 9381171 Query 31368 ATAACATTCAAAA 31380 | |||||||| || Sbjct 9381170 ACAACATTCAGAA 9381158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445707776146320