Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21] 10,521 sequences; 224,417,174 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq7552 356 3e-93 seq7526 109 7e-19 >seq7552 Length=2500597 Score = 356 bits (394), Expect = 3e-93 Identities = 1199/1854 (65%), Gaps = 30/1854 (2%) Strand=Plus/Plus Query 62067 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 62126 || || || ||||| ||||||||||| || ||||| | || | |||| || || ||| Sbjct 1134920 GCCGGCTTGGTACGCAGATAGTACATGCCAGTTTTCAACCCCATCTTCCAGCCATAGAAA 1134979 Query 62127 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 62186 || || ||| || ||| ||| | || || || | || || || | ||||| Sbjct 1134980 TGGATCGACGTCAGCTTGCCATAGTTTGGCTCCGCGACGTGAATGTTGAACGATTGCGAC 1135039 Query 62187 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCC 62246 |||||||| || || || | ||||| |||||||| ||| ||| || | || ||| Sbjct 1135040 TGATCGATAAACGCGCCACGATCTGCGGCCATTTTGATGCACGTTTTCACCGAGATCTCC 1135099 Query 62247 CAAATAGTTTTATAAAC-TCGCTTAATATCTTCTGGAAGGTTTGTATTCT---GAATGGA 62302 || | ||||| || | |||| ||| || | || | | | ||| | || || Sbjct 1135100 CATACCGTTTTGTACAGATCGCG-AATTTCCTGCGGTATAGCCGCAATCTTTTGGATCGA 1135158 Query 62303 TCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAA 62362 |||| | || ||| ||||| || || || ||| | | | ||| || Sbjct 1135159 TCCATTGTTGGACAGAATTTCGTTCTTCATGTCGAGATCCCACAGACCCATGTTGGTCAA 1135218 Query 62363 AACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTA 62422 | | || ||||| |||| || || ||||| || || |||| || | || | |||| Sbjct 1135219 ATCCTGCAGAAGATGATGGTTCACCACCTGGAACTCGCCCGACAGCACGCGCCTATTGTA 1135278 Query 62423 AATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGC 62482 || || || ||||| || | ||| ||||| || || | |||||| || || || || Sbjct 1135279 AACGTTCGACGTGTACGGCTCGAACGATTCATTGTTGCCGAGAATTTGTGCCGTGGAAGC 1135338 Query 62483 AGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTT 62542 |||||||| || |||| || | ||| | || |||| | ||| || || || Sbjct 1135339 CGTCGGCATCGGGGCCAACAGCAGCGAATTGCGAATGCCGTGCTTGGCGATCTTTTCCTT 1135398 Query 62543 TAGATGTTCCCAATTCCAAAGATCCGACGGTACAACANNNNNNNNNNNATATTGTAGAAT 62602 | | |||| ||||| ||||||| |||| | || || | || Sbjct 1135399 CAACTCGGCCCAGTTCCACAGATCCGTCGGTTCCTTGTTCCACATCTCGTACTGCAAGAT 1135458 Query 62603 ACCGTTACTGGC-GTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTT 62661 || || || | | || ||| | || || || || || || || | || | | Sbjct 1135459 GCCCTTGCTCACCGGACTGCCCT-CGTACGTCTCGTACGGACCATCTCGAGCGGCCAACT 1135517 Query 62662 TACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTT 62721 ||| ||||| || | || ||||| || |||||||| || || | || |||||| | || Sbjct 1135518 CACAGCTCGCTTCCAGCGCGCCGTAGTAGATGGTTTCGAATATTTGCTGATTTAGCTTTT 1135577 Query 62722 GTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAA 62781 | || || ||| || | ||||| | || || ||||| || || | || || | Sbjct 1135578 GAGCCTCTTCGCTTTCGTACGGATAGCGCATCAGGATGAACGCATCGGCCATGCCCTGCA 1135637 Query 62782 CACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAAT 62841 | || || ||||| || || || | | |||| ||| | ||| || || | ||||| | Sbjct 1135638 CGCCGATCCCGATCGGCCTGTGGCGCATATTGGAGCGCTTAGCCTCCGGCACGGGATAGT 1135697 Query 62842 AATTAATATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCA 62898 |||| | ||| || ||||| || ||||| | | || | ||| | | || ||||||| Sbjct 1135698 AATTGACATCAATGATTTTGTTCAGATTGCGCGTTACGGT--CTTAG-CGACTTCCTTCA 1135754 Query 62899 GTTTGAGAAAATCAAA----TCGCCCATCTATTACAAACATGTTCAATGCAACAGATGCC 62954 | || ||| ||| | | | | || |||||||||||||||| || | || ||| Sbjct 1135755 GCTTTGCAAAGTCATACGTTTTGTCTTGCT-TTACAAACATGTTCAAGGCGATCGAGGCC 1135813 Query 62955 AGATTACACACGGCTACCTCATTAGCATC--CGCATATTGTATTATCTCAGTGCAAAGAT 63012 ||||| || || |||||||||| | || || || | || || |||||||| | | Sbjct 1135814 AGATTGCATACCGCTACCTCATC--CTTCGACGAGTACTCTACAATTTCAGTGCACAAGT 1135871 Query 63013 TACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTAT 63072 | ||| ||||| || || | ||| || || ||||| || || || |||||||| | Sbjct 1135872 TGGAACATTTGATGGTGCCGATATTCTGCTGGTTACTTTTACGATTGCAAGCATCCTTGT 1135931 Query 63073 AAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC 63132 | || ||| | || || ||||| | ||| ||||| || ||||| ||| | | Sbjct 1135932 ACAGCATGTACGGTACGCCGGTTTCCACCTGCGATTCGATGATCGCAAACCACAGATCCT 1135991 Query 63133 GAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGA 63192 | ||||| | | | | | ||| | ||||| || |||| |||| Sbjct 1135992 GCGCCTTCACCTGCCGCATAAAGCGACCCTCTTTCTCGTACCCCGTGTACAGCTTCTCGA 1136051 Query 63193 ACTCGTCTCCCCAAACATTGTCCAAT---CTAGGACATTCATCCGGACACATCAACGACC 63249 |||| || ||||| ||||| || | ||||| || | ||| ||||||| || Sbjct 1136052 ACTCTTCGCCCCAGG---TGTCCGATAGCCCGGGACAATCGTGCGGGCACATCAGACTCC 1136108 Query 63250 ACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATA 63309 || | ||| ||| ||| || | ||| || || || || ||||| || || ||| | Sbjct 1136109 ACATTTCGTTCGCCTCCACACGCTGCATGAACAGGTCCGGTATCCAGAGTGCGTAAAACA 1136168 Query 63310 GATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAA 63369 || | || | ||||| || || || || || || |||||||| ||| | | | Sbjct 1136169 TGTCCCGTGCGCGGACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCGAGAAACTCGAATA 1136228 Query 63370 TATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCT 63429 ||||| ||||||||| || | || ||||| | |||||||||| ||||| || |||| Sbjct 1136229 TATCACCATGCCACGGCTCGAGATAGATGGCGAATGCTCCAGGCCGCTTGTTGCCACCCT 1136288 Query 63430 GATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATA 63489 |||| | ||| | || || || || || || | || ||| || | | |||||| || | Sbjct 1136289 GATCGACGTACCGTGCCGTATTGTTGTAGACGCGCAGCATCGGCACCAGACCGTTCGAAA 1136348 Query 63490 TACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGAT-AGACCT 63548 | || || ||||||||||| || ||| | || || ||| | | | | || || Sbjct 1136349 TCCCGTTCGTACCGGAGATGTACGTTCCCTTCGCGCGGATAC-AGTGCACGTTCAGTCCG 1136407 Query 63549 ATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCT 63608 || || || ||| || || |||| || || | || | |||||| |||||||| || Sbjct 1136408 ATGCCACCGGCCGACTTTGAAATTAGGGCACACTGCTTCAGCGTGTCGTAGATGCCCTCA 1136467 Query 63609 ATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCC 63668 |||||||| ||| |||| | | || || ||| || | ||| |||| ||| || Sbjct 1136468 ATGCTATCTTCGGACATGGTCAACAGGAAGCAGGACGAAAGCTGGGGACGCTGAGTGGCC 1136527 Query 63669 GCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTC 63728 || ||| | || || || ||||| ||||| | || || || |||||||| ||| Sbjct 1136528 GCCGCAAACATAGTTGGCGAGGCGTGGGTAAAGTAACGCTCGGACAGCAGATTGTAGGTC 1136587 Query 63729 TCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGC 63788 || || |||| || || ||| ||| || || | || || ||||| | ||||||| Sbjct 1136588 TCGATTGCTGCATCGATGTCCTCGCCATGGATGCCAATAGCAACGCGCATCAGCATGTGC 1136647 Query 63789 TGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTA 63848 || || | || || ||||| || || |||| |||||| ||| |||||| |||||| Sbjct 1136648 TGGGGGCGCTCGACGATTTTTCCCTTGATCTTCAGCAAGTATGATCGTTCCAAGGTTTTA 1136707 Query 63849 AAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGC 63902 || || ||||||||||| ||||| || |||||||| || |||| || ||| Sbjct 1136708 AAGCCGAAATAGTTGTACCCGAAGTCGCGATCGTAAATGATGGCCGAGTTCAGC 1136761 >seq7526 Length=6110091 Score = 109 bits (120), Expect = 7e-19 Identities = 181/259 (70%), Gaps = 7/259 (3%) Strand=Plus/Plus Query 33570 TTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTA 33629 || ||||||| || || || ||||||||||| || ||||| | || | ||||| Sbjct 4673124 TTGAACATCAGGCAGGCAAAGTCGCAGTGCAGCCCTTCGTCGCGCGAGATCAGCTCGTTC 4673183 Query 33630 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT 33689 || || |||||||| ||||| ||||||||||| || ||||| || || | ||||| Sbjct 4673184 GAGAAGGTGAGTCCCGGCATCAGGCCACGCTTCTTCAGCCAGAAGATCGCGGCGAAGCTA 4673243 Query 33690 CCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG 33749 ||| |||||||| || || || ||||| || || | | | ||| ||| | ||| Sbjct 4673244 CCGCTGAAGAAGATACCCTCAACCGCAGCGAATGCCACGACCCGCTCGCCAAAGTTGGC- 4673302 Query 33750 CTGTCATG-----TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCG 33804 || || || ||||| || | ||||| || |||||| || || || |||| || Sbjct 4673303 CT-TCTTGCTCGAGATCCAGTTCAGCGCCCAGTCCGCCTTCCGCTTCACGCACGGCAGCG 4673361 Query 33805 TTTCTATGGCATTAAAGAG 33823 |||| |||||||| || || Sbjct 4673362 TTTCGATGGCATTGAACAG 4673380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629734771112880