Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21] 10,521 sequences; 224,417,174 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq7552 338 8e-88 seq7526 91.5 2e-13 >seq7552 Length=2500597 Score = 338 bits (374), Expect = 8e-88 Identities = 1218/1890 (64%), Gaps = 42/1890 (2%) Strand=Plus/Plus Query 70791 CTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCC 70850 |||||||| |||||||| || | | || | || ||||| |||||||||||||| Sbjct 1134889 CTTGTCCACCGTAAACTGGATCGCATTTACGGCCGGCTTGGTACGCAGATAGTACATGCC 1134948 Query 70851 TGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGG 70910 ||||| | || | |||| || || ||||| || ||| || ||| |||| | || Sbjct 1134949 AGTTTTCAACCCCATCTTCCAGCCATAGAAATGGATCGACGTCAGCTTGCCATAGTTTGG 1135008 Query 70911 ATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 70970 || || | |||||| || | ||| || |||||||| || || || | ||||| || Sbjct 1135009 CTCCGCGACGTGAATGTTGAACGATTGCGACTGATCGATAAACGCGCCACGATCTGCGGC 1135068 Query 70971 CATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATAT 71029 |||||| ||| ||| || | || ||||| | ||||| || | |||| ||| | Sbjct 1135069 CATTTTGATGCACGTTTTCACCGAGATCTCCCATACCGTTTTGTACAGATCGCG-AATTT 1135127 Query 71030 CTTCTGGAAGGTTTGTATTCT---GAATGGATCCACCATCTGCAATAATCCTATTTTTGA 71086 | | || | | | ||| | || |||||| | | | ||| || || | Sbjct 1135128 CCTGCGGTATAGCCGCAATCTTTTGGATCGATCCATTGTTGGACAGAATTTCGTTCTTCA 1135187 Query 71087 TCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTT 71146 | || || ||| | | | ||| ||| | || |||||| | || || || | Sbjct 1135188 TGTCGAGATCCCACAGACCCATGTTGGTCAAATCCTGCAGAAGATGATGGTTCACCACCT 1135247 Query 71147 GAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACT 71206 | || || || |||| || | | | |||||| || || ||||| || | || | Sbjct 1135248 GGAACTCGCCCGACAGCACGCGCCTATTGTAAACGTTCGACGTGTACGGCTCGAACGATT 1135307 Query 71207 CATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTAT 71266 |||| || || | |||||| || || || || |||||||| || |||| || || || Sbjct 1135308 CATTGTTGCCGAGAATTTGTGCCGTGGAAGCCGTCGGCATCGGGGCCAACAGCAGCGAAT 1135367 Query 71267 TTCTAAGACCATGTGATCGG--ATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGA 71324 | | || || ||| | || || || || || | |||| ||||| ||||||| Sbjct 1135368 TGCGAATGCC--GTGCTTGGCGATCTTTTCCTTCAACTCGGCCCAGTTCCACAGATCCGT 1135425 Query 71325 TGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACT-AGCGTATGATCCTGCAT 71383 ||| | ||||| || || | || | ||| | | Sbjct 1135426 CGGTTCCTTGTTCCACATCTCGTACTGCAAGATGCCCTTGCTCACCGGACTGCCCT-CGT 1135484 Query 71384 ATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAAT 71443 | || ||||| || || ||| |||| | ||||| ||||| || | || || || | Sbjct 1135485 ACGTCTCGTACGGACCATCTCGAGCGGCCAACTCACAGCTCGCTTCCAGCGCGCCGTAGT 1135544 Query 71444 AAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAAT 71503 | ||||||||||| || | || ||| || | ||| || || ||| || | ||||| Sbjct 1135545 AGATGGTTTCGAATATTTGCTGATTTAGCTTTTGAGCCTCTTCGCTTTCGTACGGATAGC 1135604 Query 71504 TTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCT 71563 | || || ||||| || || | || || ||||| || ||||| || ||||| | | Sbjct 1135605 GCATCAGGATGAACGCATCGGCCATGCCCTGCACGCCGATCCCGATCGGCCTGTGGCGCA 1135664 Query 71564 TATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGAT 71623 |||| || | ||| || || | ||||| ||||| | ||| || ||||| || |||| Sbjct 1135665 TATTGGAGCGCTTAGCCTCCGGCACGGGATAGTAATTGACATCAATGATTTTGTTCAGAT 1135724 Query 71624 TTC---TGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCATCTA 71680 | | | || | ||| | | || ||||| || || ||| ||| | | ||| Sbjct 1135725 TGCGCGTTACGGT--CTTAG-CGACTTCCTTCAGCTTTGCAAAGTCATACGTTTTGTCTT 1135781 Query 71681 ---TTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCAT 71737 ||||||||| ||||||||| | || |||||||| || || |||||||||| | | Sbjct 1135782 GCTTTACAAACATGTTCAAGGCGATCGAGGCCAGATTGCATACCGCTACCTCATC--CTT 1135839 Query 71738 CGGCA--TATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTG 71795 || | || | || |||||||||||| | || ||| |||||||| || | ||| || Sbjct 1135840 CGACGAGTACTCTACAATTTCAGTGCACAAGTTGGAACATTTGATGGTGCCGATATTCTG 1135899 Query 71796 TTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAAT 71855 || ||||| || || || |||||||| || || || |||| || ||||| | Sbjct 1135900 CTGGTTACTTTTACGATTGCAAGCATCCTTGTACAGCATGTACGGTACGCCGGTTTCCAC 1135959 Query 71856 CTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTT 71915 ||| ||||| || ||||| ||| | | | ||||| | | | | | Sbjct 1135960 CTGCGATTCGATGATCGCAAACCACAGATCCTGCGCCTTCACCTGCCGCATAAAGCGACC 1136019 Query 71916 TTCTCTTTCGTATT--GTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAAT 71973 ||| | ||||| ||||| | || |||||||| || ||||| | |||| || Sbjct 1136020 CTCTTTCTCGTACCCCGTGTACAGCTTC--TCGAACTCTTCGCCCCAGG---TGTCCGAT 1136074 Query 71974 ---CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTC 72030 || ||||| || | ||| ||||||| |||| | | | | | || || | | Sbjct 1136075 AGCCCGGGACAATCGTGCGGGCACATCAGACTCCACATTTCGTTCGCCTCCACACGCTGC 1136134 Query 72031 ATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG--CTCCTCGT 72088 || || || || || ||||| || || |||| | || || || | | |||||| | Sbjct 1136135 ATGAACAGGTCCGGTATCCAGAGTGCG-TAAA-ACATGTCCCGTGCGCGGACCTCCTCCT 1136192 Query 72089 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 72148 | || || || || || |||||||| ||| | | |||||| ||||||||| || | | Sbjct 1136193 TGCCGGTGTTTTTCTTCAGATCGAGAAACTCGAATATATCACCATGCCACGGCTCGAGAT 1136252 Query 72149 ATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 72208 | ||||| | |||| ||||| ||||| || |||||||| | ||| | || || || | Sbjct 1136253 AGATGGCGAATGCTCCAGGCCGCTTGTTGCCACCCTGATCGACGTACCGTGCCGTATTGT 1136312 Query 72209 TATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGC 72268 | || || | || ||| || | | ||| || || || || || |||||||| || Sbjct 1136313 TGTAGACGCGCAGCATCGGCACCAGACCGTTCGAAATCCCGTTCGTACCGGAGATGTACG 1136372 Query 72269 TTCCACTGGCACGAATAT--TGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 72326 |||| | || || ||| ||| || | | || || || || ||| || || || Sbjct 1136373 TTCCCTTCGCGCGGATACAGTGCACGTTCA--GTCCGATGCCACCGGCCGACTTTGAAAT 1136430 Query 72327 TAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAG 72386 || || || | || | ||| || ||||||||||| || ||||| || |||| | | Sbjct 1136431 TAGGGCACACTGCTTCAGCGTGTCGTAGATGCCCTCAATGCTATCTTCGGACATGGTCAA 1136490 Query 72387 TAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGC 72446 || || ||| || | ||| |||| ||| |||| ||| | || || || || Sbjct 1136491 CAGGAAGCAGGACGAAAGCTGGGGACGCTGAGTGGCCGCCGCAAACATAGTTGGCGAGGC 1136550 Query 72447 GTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCA 72506 ||| ||||| | || ||||| |||||||| ||||| || |||| || || ||| Sbjct 1136551 GTGGGTAAAGTAACGCTCGGACAGCAGATTGTAGGTCTCGATTGCTGCATCGATGTCCTC 1136610 Query 72507 TTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTT 72566 ||| || || | || || ||||| | ||| ||||| || | || ||||| || Sbjct 1136611 GCCATGGATGCCAATAGCAACGCGCATCAGCATGTGCTGGGGGCGCTCGACGATTTTTCC 1136670 Query 72567 ATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAA 72626 || || |||| |||||| ||| |||||| |||||||| || ||||||||||| || Sbjct 1136671 CTTGATCTTCAGCAAGTATGATCGTTCCAAGGTTTTAAAGCCGAAATAGTTGTACCCGAA 1136730 Query 72627 GTCTCGTTCGTAAATAATAACCGAATTGAG 72656 ||| || |||||||| || |||| || || Sbjct 1136731 GTCGCGATCGTAAATGATGGCCGAGTTCAG 1136760 >seq7526 Length=6110091 Score = 91.5 bits (100), Expect = 2e-13 Identities = 177/259 (68%), Gaps = 7/259 (3%) Strand=Plus/Plus Query 42053 TTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTG 42112 || ||||||| || || || ||||||||||| || || || | || | ||||| Sbjct 4673124 TTGAACATCAGGCAGGCAAAGTCGCAGTGCAGCCCTTCGTCGCGCGAGATCAGCTCGTTC 4673183 Query 42113 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT 42172 || || |||||||| ||||| ||||||||||| || ||||| || || | || || Sbjct 4673184 GAGAAGGTGAGTCCCGGCATCAGGCCACGCTTCTTCAGCCAGAAGATCGCGGCGAAGCTA 4673243 Query 42173 CCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCA 42232 || |||||||| || || || || || || || | | | ||| ||| | ||| Sbjct 4673244 CCGCTGAAGAAGATACCCTCAACCGCAGCGAATGCCACGACCCGCTCGCCAAAGTTGGC- 4673302 Query 42233 CTGTCATG-----TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCG 42287 || || || ||||| || | ||||| || |||||| || || || |||| || Sbjct 4673303 CT-TCTTGCTCGAGATCCAGTTCAGCGCCCAGTCCGCCTTCCGCTTCACGCACGGCAGCG 4673361 Query 42288 TTTCTATGGCATTAAAGAG 42306 |||| |||||||| || || Sbjct 4673362 TTTCGATGGCATTGAACAG 4673380 Score = 91.5 bits (100), Expect = 2e-13 Identities = 154/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 42374 TTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTA 42433 ||||| || || ||||| || |||||||| || | ||||| |||||||| || || Sbjct 4673548 TTTTCCATCGCAATCTGGAAGCCGTAGAAGCAGCGCGCCTCCGTAACCTGCACCTCCTGG 4673607 Query 42434 CAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAAT 42493 | || ||||| | | ||| |||||||| || ||||| || ||||| || |||| Sbjct 4673608 CTGAAGCGTTCCACCAGATTCTCGTTCACGATACCGTCGGACGCGGCAAAGAAGGCCAGC 4673667 Query 42494 ACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATATCTTTA 42553 || || || || | |||| |||| | | | ||| || || ||||| || Sbjct 4673668 ACGTGGGAAATGAAGTGGCGTTCGCTCGGTTTCAGCGACTCCCAGTCCTTCATATCCTTG 4673727 Query 42554 GATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCT 42596 || | ||| || ||||| ||||||||||| || ||||| |||| Sbjct 4673728 GACAGATCAACCTCTTCCACCGTCCAAAAGGAAGCTTCCGCCT 4673770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671050936805960