Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21] 10,521 sequences; 224,417,174 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq7517 194 2e-44 seq7552 183 4e-41 seq7526 156 6e-33 seq7551 118 2e-21 seq9000 116 5e-21 >seq7517 Length=11427604 Score = 194 bits (214), Expect = 2e-44 Identities = 363/533 (68%), Gaps = 3/533 (1%) Strand=Plus/Plus Query 49797 CCGTGGAGCCTCCCATGTTTCTATACATGATGGCCTTCATGACGACCACGGTCATCGAGC 49856 |||| || || | ||||| || ||||||||||| || ||| || |||| | |||| Sbjct 8149542 CCGTCGAACCGTCGATGTTCCTGTACATGATGGCGTTTATGCTAACGTCGGTGGTGGAGC 8149601 Query 49857 AGGCGTTTTACGTGTACCAAGCGTGCACCGTCAACCATGGCTACTCGCCAGAGGTGTGCC 49916 ||||||| | | |||| |||||||||||||| | |||||||| |||| ||| | |||| Sbjct 8149602 AGGCGTTCTTCCTGTATAAAGCGTGCACCGTCGATCATGGCTATTCGCACGAGATTTGCC 8149661 Query 49917 ACAACATTAGCCAGTACGATGACATCAACAACCGAGTCCAGCAGACTGTGTCTACATTTC 49976 |||||| |||||| | || || || || | |||||| ||| || || |||| Sbjct 8149662 TCAACATCGAGCAGTACCAGGATATAAAAAAGCAGGTCCAGGTGACGACCTCGACCTTTC 8149721 Query 49977 ATCAGTGGAACGGTGTAGCCAGTCATGTGGTGCCCTTTATATTGGCCTTTTTCCTAGGAT 50036 ||||||||||| | |||| | |||||||| | | |||| || || || || Sbjct 8149722 ATCAGTGGAACAACATCGCCATGTACGTGGTGCCGATCGTGCTGGCGTTGTTTCTCGGCG 8149781 Query 50037 CCTATAGTGATAGGCGCGGTAGAAAGATTGTACTCGTATGTGGACTCGTAGGTAAACTCT 50096 ||| ||||| || || | ||| | |||| | || || | || || | Sbjct 8149782 CCTGGTCCGATAGACGTGGCCGCAAGCTGCCACTCATCCTCGGGCTGATGGGCAAGTTTG 8149841 Query 50097 TTTTCTCGGCAATGCTAACCGTAAACAGTCTCAAGAGC---TGGCCCGTAGAGTATATAA 50153 | | ||||| ||| | || |||| | || | | ||||| || ||||| || | Sbjct 8149842 TCTACTCGGTCATGATCGTGGTGAACACGCGCATGCCCTCGTGGCCGGTCGAGTACATCA 8149901 Query 50154 TCTACACGGCATCCTTTCCGAGTGCACTCACCGGAGCCGATTTGACCATATTCGCAGCGT 50213 |||||||||| | | ||||| | ||| ||||| ||||| | |||| || || | | Sbjct 8149902 TCTACACGGCCACGATCCCGAGCGTACTGACCGGGGCCGACATTGCCATCTTTGCCTCCT 8149961 Query 50214 GCTTTGCCTACATTGCCGATGTGTCGACTGTGGAGAATCGCACGCTACGAGTGGGCATCT 50273 ||||||| ||||| |||| | |||| |||||| | |||||||| || | || Sbjct 8149962 GCTTTGCGTACATCTCCGACATCACGACGGTGGAGGAGCGCACGCTGCGCATTACGATAC 8150021 Query 50274 TGGATGCCGTCTACCTGAGCACGATGCCAACCGGTGTGGCGATCGGTAGTGTG 50326 |||| ||| |||||| ||||| ||||| | |||||| ||| |||| | |||| Sbjct 8150022 TGGACGCCACCTACCTCAGCACCATGCCGATCGGTGTCGCGCTCGGCAATGTG 8150074 >seq7552 Length=2500597 Score = 183 bits (202), Expect = 4e-41 Identities = 380/561 (68%), Gaps = 6/561 (1%) Strand=Plus/Minus Query 96825 GGCCTAGTGCCAATGCTCAGAATGTACAATGCAAT--GTCACGATACGTTACACAGGGCG 96882 || || ||||| ||||| | | ||||| |||| | |||| ||||| ||||| | Sbjct 1136340 GGTCTGGTGCCGATGCTGCGCGTCTACAA--CAATACGGCACGGTACGTCGATCAGGGTG 1136283 Query 96883 GCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTG 96942 |||| || ||||| || || | ||| |||| | || || ||||| | || | || | Sbjct 1136282 GCAACAAGCGGCCTGGAGCATTCGCCATCTATCTCGAGCCGTGGCATGGTGATATATTCG 1136223 Query 96943 ACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTT 97002 | ||| |||| || |||||| | ||| || |||| || || ||||| |||||| Sbjct 1136222 AGTTTCTCGATCTGAAGAAAAACACCGGCAAGGAGGAGGTCCGCGCACGGGACATGTTTT 1136163 Query 97003 ATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC-TGGAGC 97061 | ||||||||| | || || |||||||| |||| || | | || | | ||||| Sbjct 1136162 ACGCACTCTGGATACCGGACCTGTTCATGCAGCGTGTGGAGG-CGAACGAAATGTGGAGT 1136104 Query 97062 CTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAGGCC 97121 || |||||||| || | ||||| || || || ||||||||||||||| ||| Sbjct 1136103 CTGATGTGCCCGCACGATTGTCCCGGGCTATCGGACACCTGGGGCGAAGAGTTCGAGAAG 1136044 Query 97122 AAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGAGTCGATGCACGAGAACTG 97181 |||||||| |||||| ||||||| || | || | | || | || | || ||| Sbjct 1136043 CTGTACACGGGGTACGAGAAAGAGGGTCGCTTTATGCGGCAGGTGAAGGCGCAGGATCTG 1135984 Query 97182 TGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAGGAT 97241 ||| || ||| | | ||||| || || || |||||||| || ||||||||| Sbjct 1135983 TGGTTTGCGATCATCGAATCGCAGGTGGAAACCGGCGTACCGTACATGCTGTACAAGGAT 1135924 Query 97242 ACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTGTGC 97301 | ||||| || || ||||| | | | ||||||||||| | ||||| ||||| Sbjct 1135923 GCTTGCAATCGTAAAAGTAACCAGCAGAATATCGGCACCATCAAATGTTCCAACTTGTGC 1135864 Query 97302 ACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTGGCATCGGTC 97361 || ||||||||||||||| | || ||| ||| || || ||| |||||| ||| || Sbjct 1135863 ACTGAAATTGTAGAGTACTCGTCGAAGGATGAGGTAGCGGTATGCAATCTGGCCTCGATC 1135804 Query 97362 AATCTGCCCAAGTTTGTAGAG 97382 || || ||||||| || Sbjct 1135803 GCCTTGAACATGTTTGTAAAG 1135783 Score = 122 bits (134), Expect = 1e-22 Identities = 311/471 (66%), Gaps = 2/471 (0%) Strand=Plus/Minus Query 97792 TGCTGGTGGCACCGATGCCCACGGCTACCACTTCCCAAGTGTTTGGCAATGCTGAATCTT 97851 ||||| |||| |||||||| |||||| |||| | ||| | | ||||| |||||| | Sbjct 1135361 TGCTGTTGGCCCCGATGCCGACGGCTTCCACGGCACAAATTCTCGGCAACAATGAATCGT 1135302 Query 97852 TTGAACCGTTCACGTCAAACATGTACCAGAGACGCACCCAGTCTGGAGAGTTTCAATTGA 97911 | || |||| |||||| ||| | ||| | || ||| | ||| || ||||| || || Sbjct 1135301 TCGAGCCGTACACGTCGAACGTTTACAATAGGCGCGTGCTGTCGGGCGAGTTCCAGGTGG 1135242 Query 97912 CCAACGTGCACTTGGTTCGAGACTTGGAACGGC-TCAATCTGTGGAACGATGACATGGCC 97970 ||| || | | | || ||| | | | | ||||||| | |||||| Sbjct 1135241 TGAACCATCATCTTCTGCAGGATTTG-ACCAACATGGGTCTGTGGGATCTCGACATGAAG 1135183 Query 97971 CAGTTGATCATGTACAACAATGGGTCCATTCAAAACATTACCATCATCCCGGAAGAGTTG 98030 | || ||| ||||||||| || || ||||| ||| | || ||| | || | Sbjct 1135182 AACGAAATTCTGTCCAACAATGGATCGATCCAAAAGATTGCGGCTATACCGCAGGAAATT 1135123 Query 98031 CGCAGAATCTACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTGCC 98090 ||| | ||||| || || |||||||| || || ||| ||| | ||||| || Sbjct 1135122 CGCGATCTGTACAAAACGGTATGGGAGATCTCGGTGAAAACGTGCATCAAAATGGCCGCA 1135063 Query 98091 GACAGAGGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACC 98150 || | || | | || || ||| ||||||||||| | |||| || ||||| | | Sbjct 1135062 GATCGTGGCGCGTTTATCGATCAGTCGCAATCGTTCAACATTCACGTCGCGGAGCCAAAC 1135003 Query 98151 TACAGTCGTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATG 98210 || | |||| ||||| || || || | ||||| | ||| | || || |||||| Sbjct 1135002 TATGGCAAGCTGACGTCGATCCATTTCTATGGCTGGAAGATGGGGTTGAAAACTGGCATG 1134943 Query 98211 TACTATCTGAGAACAAAGTCGGCCACCAATGCCATACCATTTACGGTGGAC 98261 ||||||||| | || ||| ||||| ||||| || | |||||||||||| Sbjct 1134942 TACTATCTGCGTACCAAGCCGGCCGTAAATGCGATCCAGTTTACGGTGGAC 1134892 Score = 93.3 bits (102), Expect = 6e-14 Identities = 151/215 (70%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 134241 CTCACAAATCAGTTGTGCGATGCGATCACCCTTTGACACTACAAAGTC-GTCATCGGAAT 134299 ||| ||||| | ||||||||||||||||| || ||| |||||| ||| ||||||| Sbjct 330406 CTCGCAAATAAACTGTGCGATGCGATCACCTTTCTTAACTTCAAAGTTTGTC-TCGGAAT 330348 Query 134300 GGTTAAAGAGGACCACTCCAATGTTTCCAGTATAGTCGCGGTCCACGACACCGGCTCCGA 134359 | || || || || ||||| | ||| || ||||| ||| ||||||||||| || | Sbjct 330347 GATTGAACAGTACAACTCCGACGTTACCCCGGTAGTCCTCGTCGACGACACCGGCGCCCA 330288 Query 134360 CGTCGATTCCGTACTTGGCTGCCAGTTTGGATCGCGGAGCAATCCTACCGTAGCAACCTT 134419 | ||||| || || | |||| ||| || ||||| | || || ||||| |||| Sbjct 330287 CATCGATGAAGTTTTTCACGGCCAAACCGGAACGTGGAGCCACCCGGCCATAGCATCCTT 330228 Query 134420 CCGGGATCAGTACGCCGAGGTCTGTGTTGACGAGC 134454 |||| | | | || || ||| || | |||||| Sbjct 330227 CCGGCACCTGGACCTGGATGTCGGTCATCACGAGC 330193 >seq7526 Length=6110091 Score = 156 bits (172), Expect = 6e-33 Identities = 202/278 (73%), Gaps = 11/278 (4%) Strand=Plus/Minus Query 125038 AGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATT 125097 |||| | || |||||||||||||| |||||||| |||||||||||||| || | || | Sbjct 4673770 AGGCGGAAGCTTCCTTTTGGACGGTGGAAGAGGTTGATCTGTCCAAGGATATGAAGGACT 4673711 Query 125098 GGGAGACTCGTTTGACTGAAACTGAGCGAGAG----TTTATATCGCACATTTTGGCCTTC 125153 ||||| ||| ||||||| |||||| | || || || ||| | |||||||| Sbjct 4673710 GGGAG--TCG-----CTGAAACCGAGCGAACGCCACTTCATTTCCCACGTGCTGGCCTTC 4673658 Query 125154 TTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTG 125213 ||||||| ||||| || ||||| ||||| |||||| || ||| ||| || ||| || Sbjct 4673657 TTTGCCGCGTCCGACGGTATCGTGAACGAGAATCTGGTGGAACGCTTCAGCCAGGAGGTG 4673598 Query 125214 ACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCG 125273 || | |||| | ||||| ||||| ||||| || ||| || || |||||| Sbjct 4673597 CAGGTTACGGAGGCGCGCTGCTTCTACGGCTTCCAGATTGCGATGGAAAATGTGCACAGC 4673538 Query 125274 GAAATGTACTCTACACTGATTGACATGTACATTCGCGA 125311 || |||||||| ||||| |||| |||||| ||||| Sbjct 4673537 GAGATGTACTCGCTGCTGATCGACACGTACATCCGCGA 4673500 Score = 136 bits (150), Expect = 6e-27 Identities = 236/341 (69%), Gaps = 13/341 (4%) Strand=Plus/Minus Query 125430 GTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGG 125489 ||||||||||| || || ||||| |||||||| ||||| || || || ||||| ||| Sbjct 4673281 GTGGCATTCGCTGCGGTTGAGGGTATCTTCTTCAGCGGTAGCTTCGCCGCGATCTTCTGG 4673222 Query 125490 CTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGAC 125549 || |||||||| || || ||||| ||||| || | |||||| | || || || ||| Sbjct 4673221 CTGAAGAAGCGTGGCCTGATGCCGGGACTCACCTTCTCGAACGAGCTGATCTCGCGCGAC 4673162 Query 125550 GAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGC 125609 || || || ||||| ||||||||| || |||| ||| |||||| |||| Sbjct 4673161 GAAGGGCTGCACTGCGACTTTGCCTGCCTGATGTT---CAAGTATCTG--------GTGC 4673113 Query 125610 AG-ATCCAGCGATGAAAAG-GTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAG 125667 || | || ||| | | | || | | || | |||||| || ||| || || | Sbjct 4673112 AGAAGCCGTCGAAGGAGCGCGTGACGGAGATCATCCGCGATGCGGTCCTGATCGAGCAGG 4673053 Query 125668 AGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCG 125727 |||| || || | | || ||||| ||| | ||||||||||| | || |||| Sbjct 4673052 AGTTCCTGACGAAGGCACTGCCGGTGGATATGCTGGGCATGAACTGTGATCTGATGTCGC 4672993 Query 125728 AGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTG 125768 ||||||| ||||||||||| |||||| | ||| |||| || Sbjct 4672992 AGTACATTGAGTTTGTGGCCGATCGTTTGCTGCTCGAGCTG 4672952 >seq7551 Length=2192847 Score = 118 bits (130), Expect = 2e-21 Identities = 241/351 (69%), Gaps = 8/351 (2%) Strand=Plus/Plus Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126 || ||| |||| || || || || || |||||| | |||| || ||| || | Sbjct 1923681 GGGGATTTGGGCCCGGTATATGGGTTTCAGTGGCGCCACTTTGGTGCCACCTACAAAACA 1923740 Query 70127 TGCGA-GACAGACTATTCGGGTCAGGGTGTTGATCAATTG-CAGACAATCATTGACACTC 70184 ||| | ||| || || | |||||||| | ||||| || | || | | || |||| Sbjct 1923741 TGCCACGAC-GATTACACAGGTCAGGGAATAGATCAGCTGGCTGA-AGTGATCGACAAAA 1923798 Query 70185 TCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGC 70244 | |||| |||||| ||| | | ||| | |||||| | ||||||||| | ||| | | Sbjct 1923799 TTAAGAACAATCCCTACGATCGTCGAATCATCATGTGCGCTTGGAATCCTTCTGATATTC 1923858 Query 70245 ACCAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTACTCGT--ACGATGGCAA 70302 | ||||||||||| || || ||||| ||||| ||||||| |||| ||||| | Sbjct 1923859 CTAACATGGCACTACCGCCATGCCACTGCTTGGCACAGTTTT--TCGTTAGTGATGGAGA 1923916 Query 70303 ATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACAT 70362 |||| || |||||||| | |||||| | || || || || ||||||||||| Sbjct 1923917 GCTGTCGTGTCAGATGTATCAACGTTCGGCCGACGTAGGTCTGGGCGTGCCCTTTAACAT 1923976 Query 70363 TGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAA 70413 ||| ||||| || || |||| |||||||| || || | ||||| || || Sbjct 1923977 TGCCAGCTACTCCTTGCTGACCCACATGATCGCGCATGTCACCGGACTAAA 1924027 >seq9000 Length=14291 Score = 116 bits (128), Expect = 5e-21 Identities = 314/473 (66%), Gaps = 17/473 (4%) Strand=Plus/Minus Query 127101 TTTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTC-TTGTGCGTTGTAGTGG 127159 ||| ||| | ||||| ||||| || || || || | | ||| || ||||| || || Sbjct 11487 TTTCCGGAAGAAGATTACTCCTGCACGGGGGCCACGTAATGTCCTTATGCGT-GT-GTAC 11430 Query 127160 TCACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCC-GCA 127218 | |||| || ||| || || || ||||| ||| | |||||| | ||||| | | Sbjct 11429 TAACAACATCCGCATATTCGAATGGTGACGGAATCACTCCGGCCGCAA-CTAGCCCAGAA 11371 Query 127219 ATGTGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCGT 127278 || ||||| ||||| || | || | | || | | |||||| || ||||| | | Sbjct 11370 ATATGTGCCATATCTGCGAACAAATATGCACCATTTTGGTTGGCAATTTCCCGGAACCTT 11311 Query 127279 CTATAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAAT 127338 | ||||||| | || | ||||| | || || || || | | |||||||| Sbjct 11310 TTGTAGTCCAGACAACGCGAGTAGCACGAAATACCAGCAATAATAACTTTCGGTTTGAAG 11251 Query 127339 AGATTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTTG 127398 || || |||| | | ||| | || |||| | ||||| ||||| || || Sbjct 11250 AGGCGCGCTGTCTCCTCCATCTTGTCGTAATCGATCAACCCAGTAACTGGATCGACTTTA 11191 Query 127399 TACGGCATGCTTTCGAAAAAGAGTGATGTAGCGGACA-------CG-TTGCG----GAAT 127446 || |||||||||||||| |||| ||||||||| || | || ||| | ||| Sbjct 11190 TATGGCATGCTTTCGAAGAAGATTGATGTAGCAGATATTTTTTTCGTTTGAGTCATGAAA 11131 Query 127447 CCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTA 127506 ||||| || | || || |||||||| ||||| || |||||||| | |||||||||| | Sbjct 11130 CCGTGGGTTAAATGACCACCGTCGGGTAGATCAAGGCCCATGATACGTCCGTGCGGTTCA 11071 Query 127507 ACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTAC 127559 | | |||||||||| ||||| || || || || || |||||||| || Sbjct 11070 ATAAGAGCAGTGTACACAGCAAAATTTGCTGGTGAACCAGAATACGGTTGAAC 11018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740961741451960