Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21]
10,521 sequences; 224,417,174 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq7517 194 2e-44
seq7552 183 4e-41
seq7526 156 6e-33
seq7551 118 2e-21
seq9000 116 5e-21
>seq7517
Length=11427604
Score = 194 bits (214), Expect = 2e-44
Identities = 363/533 (68%), Gaps = 3/533 (1%)
Strand=Plus/Plus
Query 49797 CCGTGGAGCCTCCCATGTTTCTATACATGATGGCCTTCATGACGACCACGGTCATCGAGC 49856
|||| || || | ||||| || ||||||||||| || ||| || |||| | ||||
Sbjct 8149542 CCGTCGAACCGTCGATGTTCCTGTACATGATGGCGTTTATGCTAACGTCGGTGGTGGAGC 8149601
Query 49857 AGGCGTTTTACGTGTACCAAGCGTGCACCGTCAACCATGGCTACTCGCCAGAGGTGTGCC 49916
||||||| | | |||| |||||||||||||| | |||||||| |||| ||| | ||||
Sbjct 8149602 AGGCGTTCTTCCTGTATAAAGCGTGCACCGTCGATCATGGCTATTCGCACGAGATTTGCC 8149661
Query 49917 ACAACATTAGCCAGTACGATGACATCAACAACCGAGTCCAGCAGACTGTGTCTACATTTC 49976
|||||| |||||| | || || || || | |||||| ||| || || ||||
Sbjct 8149662 TCAACATCGAGCAGTACCAGGATATAAAAAAGCAGGTCCAGGTGACGACCTCGACCTTTC 8149721
Query 49977 ATCAGTGGAACGGTGTAGCCAGTCATGTGGTGCCCTTTATATTGGCCTTTTTCCTAGGAT 50036
||||||||||| | |||| | |||||||| | | |||| || || || ||
Sbjct 8149722 ATCAGTGGAACAACATCGCCATGTACGTGGTGCCGATCGTGCTGGCGTTGTTTCTCGGCG 8149781
Query 50037 CCTATAGTGATAGGCGCGGTAGAAAGATTGTACTCGTATGTGGACTCGTAGGTAAACTCT 50096
||| ||||| || || | ||| | |||| | || || | || || |
Sbjct 8149782 CCTGGTCCGATAGACGTGGCCGCAAGCTGCCACTCATCCTCGGGCTGATGGGCAAGTTTG 8149841
Query 50097 TTTTCTCGGCAATGCTAACCGTAAACAGTCTCAAGAGC---TGGCCCGTAGAGTATATAA 50153
| | ||||| ||| | || |||| | || | | ||||| || ||||| || |
Sbjct 8149842 TCTACTCGGTCATGATCGTGGTGAACACGCGCATGCCCTCGTGGCCGGTCGAGTACATCA 8149901
Query 50154 TCTACACGGCATCCTTTCCGAGTGCACTCACCGGAGCCGATTTGACCATATTCGCAGCGT 50213
|||||||||| | | ||||| | ||| ||||| ||||| | |||| || || | |
Sbjct 8149902 TCTACACGGCCACGATCCCGAGCGTACTGACCGGGGCCGACATTGCCATCTTTGCCTCCT 8149961
Query 50214 GCTTTGCCTACATTGCCGATGTGTCGACTGTGGAGAATCGCACGCTACGAGTGGGCATCT 50273
||||||| ||||| |||| | |||| |||||| | |||||||| || | ||
Sbjct 8149962 GCTTTGCGTACATCTCCGACATCACGACGGTGGAGGAGCGCACGCTGCGCATTACGATAC 8150021
Query 50274 TGGATGCCGTCTACCTGAGCACGATGCCAACCGGTGTGGCGATCGGTAGTGTG 50326
|||| ||| |||||| ||||| ||||| | |||||| ||| |||| | ||||
Sbjct 8150022 TGGACGCCACCTACCTCAGCACCATGCCGATCGGTGTCGCGCTCGGCAATGTG 8150074
>seq7552
Length=2500597
Score = 183 bits (202), Expect = 4e-41
Identities = 380/561 (68%), Gaps = 6/561 (1%)
Strand=Plus/Minus
Query 96825 GGCCTAGTGCCAATGCTCAGAATGTACAATGCAAT--GTCACGATACGTTACACAGGGCG 96882
|| || ||||| ||||| | | ||||| |||| | |||| ||||| ||||| |
Sbjct 1136340 GGTCTGGTGCCGATGCTGCGCGTCTACAA--CAATACGGCACGGTACGTCGATCAGGGTG 1136283
Query 96883 GCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTG 96942
|||| || ||||| || || | ||| |||| | || || ||||| | || | || |
Sbjct 1136282 GCAACAAGCGGCCTGGAGCATTCGCCATCTATCTCGAGCCGTGGCATGGTGATATATTCG 1136223
Query 96943 ACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTT 97002
| ||| |||| || |||||| | ||| || |||| || || ||||| ||||||
Sbjct 1136222 AGTTTCTCGATCTGAAGAAAAACACCGGCAAGGAGGAGGTCCGCGCACGGGACATGTTTT 1136163
Query 97003 ATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC-TGGAGC 97061
| ||||||||| | || || |||||||| |||| || | | || | | |||||
Sbjct 1136162 ACGCACTCTGGATACCGGACCTGTTCATGCAGCGTGTGGAGG-CGAACGAAATGTGGAGT 1136104
Query 97062 CTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAGGCC 97121
|| |||||||| || | ||||| || || || ||||||||||||||| |||
Sbjct 1136103 CTGATGTGCCCGCACGATTGTCCCGGGCTATCGGACACCTGGGGCGAAGAGTTCGAGAAG 1136044
Query 97122 AAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGAGTCGATGCACGAGAACTG 97181
|||||||| |||||| ||||||| || | || | | || | || | || |||
Sbjct 1136043 CTGTACACGGGGTACGAGAAAGAGGGTCGCTTTATGCGGCAGGTGAAGGCGCAGGATCTG 1135984
Query 97182 TGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAGGAT 97241
||| || ||| | | ||||| || || || |||||||| || |||||||||
Sbjct 1135983 TGGTTTGCGATCATCGAATCGCAGGTGGAAACCGGCGTACCGTACATGCTGTACAAGGAT 1135924
Query 97242 ACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTGTGC 97301
| ||||| || || ||||| | | | ||||||||||| | ||||| |||||
Sbjct 1135923 GCTTGCAATCGTAAAAGTAACCAGCAGAATATCGGCACCATCAAATGTTCCAACTTGTGC 1135864
Query 97302 ACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTGGCATCGGTC 97361
|| ||||||||||||||| | || ||| ||| || || ||| |||||| ||| ||
Sbjct 1135863 ACTGAAATTGTAGAGTACTCGTCGAAGGATGAGGTAGCGGTATGCAATCTGGCCTCGATC 1135804
Query 97362 AATCTGCCCAAGTTTGTAGAG 97382
|| || ||||||| ||
Sbjct 1135803 GCCTTGAACATGTTTGTAAAG 1135783
Score = 122 bits (134), Expect = 1e-22
Identities = 311/471 (66%), Gaps = 2/471 (0%)
Strand=Plus/Minus
Query 97792 TGCTGGTGGCACCGATGCCCACGGCTACCACTTCCCAAGTGTTTGGCAATGCTGAATCTT 97851
||||| |||| |||||||| |||||| |||| | ||| | | ||||| |||||| |
Sbjct 1135361 TGCTGTTGGCCCCGATGCCGACGGCTTCCACGGCACAAATTCTCGGCAACAATGAATCGT 1135302
Query 97852 TTGAACCGTTCACGTCAAACATGTACCAGAGACGCACCCAGTCTGGAGAGTTTCAATTGA 97911
| || |||| |||||| ||| | ||| | || ||| | ||| || ||||| || ||
Sbjct 1135301 TCGAGCCGTACACGTCGAACGTTTACAATAGGCGCGTGCTGTCGGGCGAGTTCCAGGTGG 1135242
Query 97912 CCAACGTGCACTTGGTTCGAGACTTGGAACGGC-TCAATCTGTGGAACGATGACATGGCC 97970
||| || | | | || ||| | | | | ||||||| | ||||||
Sbjct 1135241 TGAACCATCATCTTCTGCAGGATTTG-ACCAACATGGGTCTGTGGGATCTCGACATGAAG 1135183
Query 97971 CAGTTGATCATGTACAACAATGGGTCCATTCAAAACATTACCATCATCCCGGAAGAGTTG 98030
| || ||| ||||||||| || || ||||| ||| | || ||| | || |
Sbjct 1135182 AACGAAATTCTGTCCAACAATGGATCGATCCAAAAGATTGCGGCTATACCGCAGGAAATT 1135123
Query 98031 CGCAGAATCTACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTGCC 98090
||| | ||||| || || |||||||| || || ||| ||| | ||||| ||
Sbjct 1135122 CGCGATCTGTACAAAACGGTATGGGAGATCTCGGTGAAAACGTGCATCAAAATGGCCGCA 1135063
Query 98091 GACAGAGGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACC 98150
|| | || | | || || ||| ||||||||||| | |||| || ||||| | |
Sbjct 1135062 GATCGTGGCGCGTTTATCGATCAGTCGCAATCGTTCAACATTCACGTCGCGGAGCCAAAC 1135003
Query 98151 TACAGTCGTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATG 98210
|| | |||| ||||| || || || | ||||| | ||| | || || ||||||
Sbjct 1135002 TATGGCAAGCTGACGTCGATCCATTTCTATGGCTGGAAGATGGGGTTGAAAACTGGCATG 1134943
Query 98211 TACTATCTGAGAACAAAGTCGGCCACCAATGCCATACCATTTACGGTGGAC 98261
||||||||| | || ||| ||||| ||||| || | ||||||||||||
Sbjct 1134942 TACTATCTGCGTACCAAGCCGGCCGTAAATGCGATCCAGTTTACGGTGGAC 1134892
Score = 93.3 bits (102), Expect = 6e-14
Identities = 151/215 (70%), Gaps = 2/215 (1%)
Strand=Plus/Minus
Query 134241 CTCACAAATCAGTTGTGCGATGCGATCACCCTTTGACACTACAAAGTC-GTCATCGGAAT 134299
||| ||||| | ||||||||||||||||| || ||| |||||| ||| |||||||
Sbjct 330406 CTCGCAAATAAACTGTGCGATGCGATCACCTTTCTTAACTTCAAAGTTTGTC-TCGGAAT 330348
Query 134300 GGTTAAAGAGGACCACTCCAATGTTTCCAGTATAGTCGCGGTCCACGACACCGGCTCCGA 134359
| || || || || ||||| | ||| || ||||| ||| ||||||||||| || |
Sbjct 330347 GATTGAACAGTACAACTCCGACGTTACCCCGGTAGTCCTCGTCGACGACACCGGCGCCCA 330288
Query 134360 CGTCGATTCCGTACTTGGCTGCCAGTTTGGATCGCGGAGCAATCCTACCGTAGCAACCTT 134419
| ||||| || || | |||| ||| || ||||| | || || ||||| ||||
Sbjct 330287 CATCGATGAAGTTTTTCACGGCCAAACCGGAACGTGGAGCCACCCGGCCATAGCATCCTT 330228
Query 134420 CCGGGATCAGTACGCCGAGGTCTGTGTTGACGAGC 134454
|||| | | | || || ||| || | ||||||
Sbjct 330227 CCGGCACCTGGACCTGGATGTCGGTCATCACGAGC 330193
>seq7526
Length=6110091
Score = 156 bits (172), Expect = 6e-33
Identities = 202/278 (73%), Gaps = 11/278 (4%)
Strand=Plus/Minus
Query 125038 AGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATT 125097
|||| | || |||||||||||||| |||||||| |||||||||||||| || | || |
Sbjct 4673770 AGGCGGAAGCTTCCTTTTGGACGGTGGAAGAGGTTGATCTGTCCAAGGATATGAAGGACT 4673711
Query 125098 GGGAGACTCGTTTGACTGAAACTGAGCGAGAG----TTTATATCGCACATTTTGGCCTTC 125153
||||| ||| ||||||| |||||| | || || || ||| | ||||||||
Sbjct 4673710 GGGAG--TCG-----CTGAAACCGAGCGAACGCCACTTCATTTCCCACGTGCTGGCCTTC 4673658
Query 125154 TTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTG 125213
||||||| ||||| || ||||| ||||| |||||| || ||| ||| || ||| ||
Sbjct 4673657 TTTGCCGCGTCCGACGGTATCGTGAACGAGAATCTGGTGGAACGCTTCAGCCAGGAGGTG 4673598
Query 125214 ACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCG 125273
|| | |||| | ||||| ||||| ||||| || ||| || || ||||||
Sbjct 4673597 CAGGTTACGGAGGCGCGCTGCTTCTACGGCTTCCAGATTGCGATGGAAAATGTGCACAGC 4673538
Query 125274 GAAATGTACTCTACACTGATTGACATGTACATTCGCGA 125311
|| |||||||| ||||| |||| |||||| |||||
Sbjct 4673537 GAGATGTACTCGCTGCTGATCGACACGTACATCCGCGA 4673500
Score = 136 bits (150), Expect = 6e-27
Identities = 236/341 (69%), Gaps = 13/341 (4%)
Strand=Plus/Minus
Query 125430 GTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGG 125489
||||||||||| || || ||||| |||||||| ||||| || || || ||||| |||
Sbjct 4673281 GTGGCATTCGCTGCGGTTGAGGGTATCTTCTTCAGCGGTAGCTTCGCCGCGATCTTCTGG 4673222
Query 125490 CTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGAC 125549
|| |||||||| || || ||||| ||||| || | |||||| | || || || |||
Sbjct 4673221 CTGAAGAAGCGTGGCCTGATGCCGGGACTCACCTTCTCGAACGAGCTGATCTCGCGCGAC 4673162
Query 125550 GAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGC 125609
|| || || ||||| ||||||||| || |||| ||| |||||| ||||
Sbjct 4673161 GAAGGGCTGCACTGCGACTTTGCCTGCCTGATGTT---CAAGTATCTG--------GTGC 4673113
Query 125610 AG-ATCCAGCGATGAAAAG-GTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAG 125667
|| | || ||| | | | || | | || | |||||| || ||| || || |
Sbjct 4673112 AGAAGCCGTCGAAGGAGCGCGTGACGGAGATCATCCGCGATGCGGTCCTGATCGAGCAGG 4673053
Query 125668 AGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCG 125727
|||| || || | | || ||||| ||| | ||||||||||| | || ||||
Sbjct 4673052 AGTTCCTGACGAAGGCACTGCCGGTGGATATGCTGGGCATGAACTGTGATCTGATGTCGC 4672993
Query 125728 AGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTG 125768
||||||| ||||||||||| |||||| | ||| |||| ||
Sbjct 4672992 AGTACATTGAGTTTGTGGCCGATCGTTTGCTGCTCGAGCTG 4672952
>seq7551
Length=2192847
Score = 118 bits (130), Expect = 2e-21
Identities = 241/351 (69%), Gaps = 8/351 (2%)
Strand=Plus/Plus
Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126
|| ||| |||| || || || || || |||||| | |||| || ||| || |
Sbjct 1923681 GGGGATTTGGGCCCGGTATATGGGTTTCAGTGGCGCCACTTTGGTGCCACCTACAAAACA 1923740
Query 70127 TGCGA-GACAGACTATTCGGGTCAGGGTGTTGATCAATTG-CAGACAATCATTGACACTC 70184
||| | ||| || || | |||||||| | ||||| || | || | | || ||||
Sbjct 1923741 TGCCACGAC-GATTACACAGGTCAGGGAATAGATCAGCTGGCTGA-AGTGATCGACAAAA 1923798
Query 70185 TCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGC 70244
| |||| |||||| ||| | | ||| | |||||| | ||||||||| | ||| | |
Sbjct 1923799 TTAAGAACAATCCCTACGATCGTCGAATCATCATGTGCGCTTGGAATCCTTCTGATATTC 1923858
Query 70245 ACCAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTACTCGT--ACGATGGCAA 70302
| ||||||||||| || || ||||| ||||| ||||||| |||| ||||| |
Sbjct 1923859 CTAACATGGCACTACCGCCATGCCACTGCTTGGCACAGTTTT--TCGTTAGTGATGGAGA 1923916
Query 70303 ATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACAT 70362
|||| || |||||||| | |||||| | || || || || |||||||||||
Sbjct 1923917 GCTGTCGTGTCAGATGTATCAACGTTCGGCCGACGTAGGTCTGGGCGTGCCCTTTAACAT 1923976
Query 70363 TGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAA 70413
||| ||||| || || |||| |||||||| || || | ||||| || ||
Sbjct 1923977 TGCCAGCTACTCCTTGCTGACCCACATGATCGCGCATGTCACCGGACTAAA 1924027
>seq9000
Length=14291
Score = 116 bits (128), Expect = 5e-21
Identities = 314/473 (66%), Gaps = 17/473 (4%)
Strand=Plus/Minus
Query 127101 TTTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTC-TTGTGCGTTGTAGTGG 127159
||| ||| | ||||| ||||| || || || || | | ||| || ||||| || ||
Sbjct 11487 TTTCCGGAAGAAGATTACTCCTGCACGGGGGCCACGTAATGTCCTTATGCGT-GT-GTAC 11430
Query 127160 TCACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCC-GCA 127218
| |||| || ||| || || || ||||| ||| | |||||| | ||||| | |
Sbjct 11429 TAACAACATCCGCATATTCGAATGGTGACGGAATCACTCCGGCCGCAA-CTAGCCCAGAA 11371
Query 127219 ATGTGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCGT 127278
|| ||||| ||||| || | || | | || | | |||||| || ||||| | |
Sbjct 11370 ATATGTGCCATATCTGCGAACAAATATGCACCATTTTGGTTGGCAATTTCCCGGAACCTT 11311
Query 127279 CTATAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAAT 127338
| ||||||| | || | ||||| | || || || || | | ||||||||
Sbjct 11310 TTGTAGTCCAGACAACGCGAGTAGCACGAAATACCAGCAATAATAACTTTCGGTTTGAAG 11251
Query 127339 AGATTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTTG 127398
|| || |||| | | ||| | || |||| | ||||| ||||| || ||
Sbjct 11250 AGGCGCGCTGTCTCCTCCATCTTGTCGTAATCGATCAACCCAGTAACTGGATCGACTTTA 11191
Query 127399 TACGGCATGCTTTCGAAAAAGAGTGATGTAGCGGACA-------CG-TTGCG----GAAT 127446
|| |||||||||||||| |||| ||||||||| || | || ||| | |||
Sbjct 11190 TATGGCATGCTTTCGAAGAAGATTGATGTAGCAGATATTTTTTTCGTTTGAGTCATGAAA 11131
Query 127447 CCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTA 127506
||||| || | || || |||||||| ||||| || |||||||| | |||||||||| |
Sbjct 11130 CCGTGGGTTAAATGACCACCGTCGGGTAGATCAAGGCCCATGATACGTCCGTGCGGTTCA 11071
Query 127507 ACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTAC 127559
| | |||||||||| ||||| || || || || || |||||||| ||
Sbjct 11070 ATAAGAGCAGTGTACACAGCAAAATTTGCTGGTGAACCAGAATACGGTTGAAC 11018
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 740961741451960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |