Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21] 10,521 sequences; 224,417,174 total letters Query= NC_005260.1 Length=233234 Score E Sequences producing significant alignments: (Bits) Value seq236 145 1e-29 >seq236 Length=1144 Score = 145 bits (160), Expect = 1e-29 Identities = 238/343 (69%), Gaps = 0/343 (0%) Strand=Plus/Minus Query 43687 TTTCAGAACAAGGATTTTTTCAACTTCAAGATGCCACATTGGATAGTAAAGAGTAGCAGC 43746 |||||| || || | |||| ||||| ||||||||||| || ||| | | || ||||| Sbjct 1144 TTTCAGCACCAGCAGGCTTTCGACTTCCAGATGCCACATCGGGTAGAACAACGTGGCAGC 1085 Query 43747 GCCACCGCGTACACCACCCTGTGAGCAACTTTTTACCGCAGTCTGGAAATATTTCCAGAA 43806 ||||| || || || ||||| ||||| |||||| || |||||||||| || |||| Sbjct 1084 ACCACCACGCACGCCGCCCTGAGAGCAGGATTTTACGGCGGTCTGGAAATGCTTGTAGAA 1025 Query 43807 CGGAATAATACCAGTGTGGCGAACTTCACCACTTCGAATGCGAGAACCTTCGGCACGAAT 43866 |||||| || || ||| | |||| |||| ||||| | ||| ||||| || Sbjct 1024 CGGAATGCAGCCGGTATGGAAAGCTTCTCCACCGCGAATCGGGCTACCCAACGCACGGAT 965 Query 43867 AGCGCCACCGTTGATACCGATACCAGCGCGTTTGCTAATATAGTCAACGATTGAACTTGC 43926 ||| ||||||| ||||| || || |||| | || || | || || | |||| Sbjct 964 GCGGCCCGCGTTGATGCCGATCCCCGCACGTTGGGAAACGTATTTCACAATGGCGCTTGA 905 Query 43927 GGTAGCGTTAATGCTATCGAGTTCGTCGCCGCTTTCGATCTTCACGCATGAGCTAAACTG 43986 ||| || ||||| ||| || || || | ||||||| ||| || ||||| ||||| Sbjct 904 GGTGGCATTAATCGAATCCAGGCTATCACCACATTCGATCAGCACACAGGAGCTGAACTG 845 Query 43987 GCGAGTCGGGGTTCGAACACCAGCAAGAATTGGCGTCGGTAGA 44029 || || || || || || |||| | |||||||| || ||| Sbjct 844 ACGGGTTGGCGTACGCACGCCAGACATGATTGGCGTAGGCAGA 802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 746122662637040