Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21] 10,521 sequences; 224,417,174 total letters Query= NC_005344.1 Length=39043 Score E Sequences producing significant alignments: (Bits) Value seq92 215 1e-51 seq7904 176 1e-39 >seq92 Length=1234 Score = 215 bits (238), Expect = 1e-51 Identities = 332/469 (71%), Gaps = 6/469 (1%) Strand=Plus/Plus Query 33664 ACGGTTTTTCCAGTATCTGTAGCTGCTGCGATGAACCCCGAACACATGGCAGAGTGTGAC 33723 |||| | | ||| |||| ||| ||||| || || ||| | || | ||||| | | Sbjct 85 ACGGCTGTGCCAATATCGGTAACTGCTACGGTGGACCTCAAAGAGTTGGCATAACGCTTT 144 Query 33724 CACAGGATAATGCGCTCTGAGTTTCCCGATTATCGAGAACTGTTCAGGGAGTCTGACATC 33783 || |||||| |||| || | ||| | ||||| ||| |||||| ||||| |||||| Sbjct 145 AACGGGATAAAGCGCGCTCAATTTGTTAACTATCGCGAATTGTTCAACGAGTCCGACATC 204 Query 33784 AAGAGCGCGGTAGCCTTTTTTAATATTTCATTCTCCATTTCAATGCGTTGTAGCTTTTTC 33843 |||||||||||||||||||||| || || || |||||||||| ||||||| |||| Sbjct 205 AAGAGCGCGGTAGCCTTTTTTAGAATATCGTTTTCCATTTCAAGACGTTGTATTCTTTTT 264 Query 33844 CTGAGCTCACGGATTTCAATTTGTTCCGGGGT-AATGGGGGAGGCTTTTGGTGTTTTGCC 33902 | | ||||| | ||| | || || || || ||||| | | || | |||||| Sbjct 265 TTCATTTCACGTAGTTCGTTCTGCTCGGGTGTCAATGGCAG-CCCAGCAGGCGCTTTGCC 323 Query 33903 CTGACGCTCATCACGCAGTTGTTTGACCCATCTTGTCATTGTGGAAAGGCCAACATCCAT 33962 ||||| ||| ||| || | || ||||| | |||| | |||||| || | ||| Sbjct 324 TTGACGTTCAAGACGGAGCTTGTTCACCCAGCGAGTCAAAGCAGAAAGGATGACGTTCAT 383 Query 33963 AGCTTTGGCGGCATCTGCCACCGTGTATTTCTGGTCAACAACCAGTTGAGCGGATTCGCG 34022 || || || || ||| | | ||||||| ||||||||||||||| | || | ||| | Sbjct 384 CGCCTTTGCTGCCTCTACAAAGGTGTATTGCTGGTCAACAACCAGCTTGGCTGCTTCAAG 443 Query 34023 TTTAAACTCTGCGCTAAAATTTCtttttttCATTGGAGCACCTGTGTTGTT-CTGAGGTG 34081 |||||| ||||| | |||| ||| ||| | | ||||||| ||| ||||| | Sbjct 444 TTTAAATTCTGCTGTGAAAT---GTTTACCCATCGTATCACCTGTAACGTTATTGAGGAG 500 Query 34082 AGCATATCACCTCTGTTCAGGTGGCCAAATTCAGTGTGCCACTTCAAAC 34130 || |||||||||||| ||||||||||||||||| | ||||| ||||| Sbjct 501 AGGATATCACCTCTGGTCAGGTGGCCAAATTCATTAAACCACTACAAAC 549 >seq7904 Length=1064 Score = 176 bits (194), Expect = 1e-39 Identities = 231/320 (72%), Gaps = 0/320 (0%) Strand=Plus/Minus Query 32879 TGAAGTGGTCAACAAAAACTGGCCACCGAGTTAGAGTTTTTCCAGTATCGATTTTCCGAT 32938 || |||||||||| || | ||||||||| ||||| | || | | | ||| ||| Sbjct 320 TGTAGTGGTCAACTAATATTGGCCACCGCATTAGACTGTTCATGGAACAGCCGTTCTGAT 261 Query 32939 TCGTTTGGGGGTAACCCACCGTTATATTCGTGCGGTCTTAGTGCACTGTAATATCCAACG 32998 || ||||| | ||| || ||||| || || ||||| ||| |||||||||| || ||| Sbjct 260 TCATTTGGCGTTAAGCCGCCGTTGTACCAATGGGGTCTCAGTTCACTGTAATACCCTACG 201 Query 32999 ATATAGTCCGTTATGGCGTGAGCTGCCTCGCTGAAGCTTACGTAACCCACCACCGGCATC 33058 |||||| || || || | |||||| | | |||| |||||| || | | Sbjct 200 ATATAGCGGGTAATCGCATTTTTAGCCTCGATAACGCTTTGATAACCCCTGGTGGGGAAC 141 Query 33059 CATTCGTTCTTCAGACTCCTGAAGAAGCGTTCCATTGGGCTGTTATCCCAGCAGTTTCCG 33118 |||||| | |||| ||||||||||| |||||||| ||||| |||||||| ||||| ||| Sbjct 140 CATTCGGTTTTCAAGCTCCTGAAGAACCGTTCCATCGGGCTATTATCCCAACAGTTACCG 81 Query 33119 CGCCGGCTCATACTCTGTCTGATCTGGTATCGCCACAATAACTGCCGGAACTGCCTGCTC 33178 ||||| ||||||||||| | ||||| | ||||||| ||| ||| | | | ||| Sbjct 80 CGCCGACTCATACTCTGCTTAATCTGACAACGCCACAGCGCCTGGCGGTATTTACGGCTG 21 Query 33179 GTATAATGACTGCCCTGATC 33198 ||||| || || |||||||| Sbjct 20 GTATAGTGGCTTCCCTGATC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124800405879010