Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21]
10,521 sequences; 224,417,174 total letters
Query= NC_005344.1
Length=39043
Score E
Sequences producing significant alignments: (Bits) Value
seq92 215 1e-51
seq7904 176 1e-39
>seq92
Length=1234
Score = 215 bits (238), Expect = 1e-51
Identities = 332/469 (71%), Gaps = 6/469 (1%)
Strand=Plus/Plus
Query 33664 ACGGTTTTTCCAGTATCTGTAGCTGCTGCGATGAACCCCGAACACATGGCAGAGTGTGAC 33723
|||| | | ||| |||| ||| ||||| || || ||| | || | ||||| | |
Sbjct 85 ACGGCTGTGCCAATATCGGTAACTGCTACGGTGGACCTCAAAGAGTTGGCATAACGCTTT 144
Query 33724 CACAGGATAATGCGCTCTGAGTTTCCCGATTATCGAGAACTGTTCAGGGAGTCTGACATC 33783
|| |||||| |||| || | ||| | ||||| ||| |||||| ||||| ||||||
Sbjct 145 AACGGGATAAAGCGCGCTCAATTTGTTAACTATCGCGAATTGTTCAACGAGTCCGACATC 204
Query 33784 AAGAGCGCGGTAGCCTTTTTTAATATTTCATTCTCCATTTCAATGCGTTGTAGCTTTTTC 33843
|||||||||||||||||||||| || || || |||||||||| ||||||| ||||
Sbjct 205 AAGAGCGCGGTAGCCTTTTTTAGAATATCGTTTTCCATTTCAAGACGTTGTATTCTTTTT 264
Query 33844 CTGAGCTCACGGATTTCAATTTGTTCCGGGGT-AATGGGGGAGGCTTTTGGTGTTTTGCC 33902
| | ||||| | ||| | || || || || ||||| | | || | ||||||
Sbjct 265 TTCATTTCACGTAGTTCGTTCTGCTCGGGTGTCAATGGCAG-CCCAGCAGGCGCTTTGCC 323
Query 33903 CTGACGCTCATCACGCAGTTGTTTGACCCATCTTGTCATTGTGGAAAGGCCAACATCCAT 33962
||||| ||| ||| || | || ||||| | |||| | |||||| || | |||
Sbjct 324 TTGACGTTCAAGACGGAGCTTGTTCACCCAGCGAGTCAAAGCAGAAAGGATGACGTTCAT 383
Query 33963 AGCTTTGGCGGCATCTGCCACCGTGTATTTCTGGTCAACAACCAGTTGAGCGGATTCGCG 34022
|| || || || ||| | | ||||||| ||||||||||||||| | || | ||| |
Sbjct 384 CGCCTTTGCTGCCTCTACAAAGGTGTATTGCTGGTCAACAACCAGCTTGGCTGCTTCAAG 443
Query 34023 TTTAAACTCTGCGCTAAAATTTCtttttttCATTGGAGCACCTGTGTTGTT-CTGAGGTG 34081
|||||| ||||| | |||| ||| ||| | | ||||||| ||| ||||| |
Sbjct 444 TTTAAATTCTGCTGTGAAAT---GTTTACCCATCGTATCACCTGTAACGTTATTGAGGAG 500
Query 34082 AGCATATCACCTCTGTTCAGGTGGCCAAATTCAGTGTGCCACTTCAAAC 34130
|| |||||||||||| ||||||||||||||||| | ||||| |||||
Sbjct 501 AGGATATCACCTCTGGTCAGGTGGCCAAATTCATTAAACCACTACAAAC 549
>seq7904
Length=1064
Score = 176 bits (194), Expect = 1e-39
Identities = 231/320 (72%), Gaps = 0/320 (0%)
Strand=Plus/Minus
Query 32879 TGAAGTGGTCAACAAAAACTGGCCACCGAGTTAGAGTTTTTCCAGTATCGATTTTCCGAT 32938
|| |||||||||| || | ||||||||| ||||| | || | | | ||| |||
Sbjct 320 TGTAGTGGTCAACTAATATTGGCCACCGCATTAGACTGTTCATGGAACAGCCGTTCTGAT 261
Query 32939 TCGTTTGGGGGTAACCCACCGTTATATTCGTGCGGTCTTAGTGCACTGTAATATCCAACG 32998
|| ||||| | ||| || ||||| || || ||||| ||| |||||||||| || |||
Sbjct 260 TCATTTGGCGTTAAGCCGCCGTTGTACCAATGGGGTCTCAGTTCACTGTAATACCCTACG 201
Query 32999 ATATAGTCCGTTATGGCGTGAGCTGCCTCGCTGAAGCTTACGTAACCCACCACCGGCATC 33058
|||||| || || || | |||||| | | |||| |||||| || | |
Sbjct 200 ATATAGCGGGTAATCGCATTTTTAGCCTCGATAACGCTTTGATAACCCCTGGTGGGGAAC 141
Query 33059 CATTCGTTCTTCAGACTCCTGAAGAAGCGTTCCATTGGGCTGTTATCCCAGCAGTTTCCG 33118
|||||| | |||| ||||||||||| |||||||| ||||| |||||||| ||||| |||
Sbjct 140 CATTCGGTTTTCAAGCTCCTGAAGAACCGTTCCATCGGGCTATTATCCCAACAGTTACCG 81
Query 33119 CGCCGGCTCATACTCTGTCTGATCTGGTATCGCCACAATAACTGCCGGAACTGCCTGCTC 33178
||||| ||||||||||| | ||||| | ||||||| ||| ||| | | | |||
Sbjct 80 CGCCGACTCATACTCTGCTTAATCTGACAACGCCACAGCGCCTGGCGGTATTTACGGCTG 21
Query 33179 GTATAATGACTGCCCTGATC 33198
||||| || || ||||||||
Sbjct 20 GTATAGTGGCTTCCCTGATC 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 124800405879010
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |