Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21] 10,521 sequences; 224,417,174 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq7521 107 2e-18 seq7535 102 7e-17 >seq7521 Length=12184106 Score = 107 bits (118), Expect = 2e-18 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| ||||||| | | ||| | |||||| || |||||| || |||||||| || | Sbjct 8321345 ACCACCGCGCAGGCGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 8321286 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || || | |||||||||||||| ||| || | || | |||||||||||| ||| Sbjct 8321285 CAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGG 8321226 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | |||||||||| || ||| ||| | | | | || ||||| | | ||| Sbjct 8321225 GATTCCTTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGAC 8321166 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 ||| | || ||||| ||||| ||||| ||||| || || ||||||||| || Sbjct 8321165 CTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCTTG 8321114 Score = 98.7 bits (108), Expect = 8e-16 Identities = 138/191 (72%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 48537 CCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 |||| ||||||||||| || | | | || || | |||||||||||||| ||| || | Sbjct 9381156 CCTTCTGAATGTTGTAGTCGGAGAGAGTG-CGACCATCCTCCAGCTGCTTGCCGGCGAAG 9381214 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGAC 48655 || | |||||||||||| || | | |||||||||| || || ||| | | | Sbjct 9381215 ATCAGACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTC 9381274 Query 48656 GCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACA 48715 | || || || | || ||| ||| | ||| ||||| || |||||||| |||||||| Sbjct 9381275 TCGATCGTGTCCGAAGGCTCGACCTCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTCACG 9381334 Query 48716 AAAATCTGCAT 48726 ||||||||||| Sbjct 9381335 AAAATCTGCAT 9381345 >seq7535 Length=3646130 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 |||||| ||| |||||| || ||||| || || | || || | ||||||||||| Sbjct 876059 ATGAAGGGTGGACTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCCTCCAGCTG 876118 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || || | || | |||||||||||| ||| | | ||||||||| || || Sbjct 876119 CTTTCCAGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGGATCTT 876178 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 | ||| | | | | || ||||| | | ||| ||||| || ||||| || ||||| Sbjct 876179 CGCCTTCACATTCTCAATCGTATCCGATGGCTCAACCTCGAGGGTGATGGTCTTTCCGGT 876238 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 ||||||||||| ||||||||||| Sbjct 876239 CAGAGTTTTCACGAAAATCTGCAT 876262 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 |||||| || |||||| || ||||| || || | || || | ||||||||||| Sbjct 875831 ATGAAGAGTAGACTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCCTCCAGCTG 875890 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| || | || | |||||||||||| ||| | | ||||||||| || || Sbjct 875891 CTTTCCGGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGGATCTT 875950 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 | ||| | | | | || ||||| | | ||| || | || ||||| || ||||| Sbjct 875951 CGCCTTCACATTCTCAATCGTATCCGATGGCTCAACTTCCAGGGTGATGGTCTTTCCGGT 876010 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 ||||||||||| ||||||||||| Sbjct 876011 CAGAGTTTTCACGAAAATCTGCAT 876034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421197185196521