Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21] 10,521 sequences; 224,417,174 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq9607 109 7e-19 >seq9607 Length=27561 Score = 109 bits (120), Expect = 7e-19 Identities = 262/396 (66%), Gaps = 18/396 (5%) Strand=Plus/Minus Query 164722 TTACATGTTATTGTTTTTGATGAGATAGATGCTCTTTGCAAAAAACGTGGT--------- 164772 ||||| | || |||| ||||| |||||||| |||| ||| |||||| Sbjct 23680 TTACACATAATAATTTTCGATGAAATAGATGCAATTTGTAAAGCTCGTGGTACTGTCGGC 23621 Query 164773 -GATAATAT--TATTCATGATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTA 164829 || | | | | | |||||| | || || || || || | | |||||||||||||| Sbjct 23620 GGAAATTCTGGTGTGCATGATACGGTTGTCAACCAACTGTTGGCAAAAATAGATGGTGTT 23561 Query 164830 GAATCCTTAAATAATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGAT 164889 || ||||| || ||||| | | || |||||||| ||| ||| | || || || Sbjct 23560 GAGCAATTAAACAACATTTTGGTAATTGGAATGACCAATCGAAGAGATATGATAGACGAA 23501 Query 164890 GCTTTATTACGACCTGGTCGATTAGAATTGAAAATAGAAATAGGATTACCCGACAAAGAA 164949 || || ||| |||||||||| ||||| | |||| ||||| | | || | ||||| Sbjct 23500 GCATTGTTAAGACCTGGTCGTCTAGAAGTTCAAATGGAAATCAGTCTTCCTAATGAAGAA 23441 Query 164950 GGACGCCTTCAAATTTTAAAAGTTCATGTGGCTAAA---ATGAAATCCTGTGATATATTA 165006 || || | |||||||| || | ||| ||| | ||||| | | | | ||| Sbjct 23440 GGTCGTGTGCAAATTTTGAATATACAT---ACTAGACGCATGAAGGAGTTTAAAAAGTTA 23384 Query 165007 TCTCCCGATGTAGATTTAAATAAAATAGCTGCCGAAACTAAAAATTATAGTGGTGCTGAA 165066 |||| || ||||| || | | | | | |||||||||| ||| ||||||||| Sbjct 23383 GCTCCTGACGTAGACTTGCGCGAGCTTGGTCAAAAGACTAAAAATTTTAGCGGTGCTGAA 23324 Query 165067 TTAGAGGGATTAGTAAGAGCCGCTCAATCAACCGCA 165102 | || ||||| ||| | || || |||||||||||| Sbjct 23323 CTGGAAGGATTGGTACGTGCAGCGCAATCAACCGCA 23288 Score = 105 bits (116), Expect = 8e-18 Identities = 193/276 (70%), Gaps = 10/276 (4%) Strand=Plus/Minus Query 164393 ATTGGAATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCA 164452 ||||| |||||| | |||||| | |||||| | ||||| |||||| | || || Sbjct 24146 ATTGGGATTTTGGAAGAATGGGCATTGGTGGATTGGATCGTGAATTTAATGCGATATTTC 24087 Query 164453 GACGAGCATTTGCTTCTAGATCAGTTCCTATC-GAAATAATaaaaaaaTTAGGCTGTAAA 164511 |||| || |||||||| | | |||| | | || | | || || | || |||||| Sbjct 24086 GACGTGCTTTTGCTTCGCG-TGTTTTCCCACCAGAGGTGGTTGAACAACTGGGATGTAAA 24028 Query 164512 CATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGA 164571 || |||| || ||| | || |||||||||||||| ||||||||| | ||||| ||| Sbjct 24027 CACGTAAAGGGCATTCTTCTATATGGACCTCCTGGTACTGGTAAAACACTTATGGCGCGA 23968 Query 164572 TGCATT-GCTCAAGCTTTTAAA---TCGCGACCCGTTAAAATTGTTAATGGTCCTGAATT 164627 ||| | ||| | ||||| ||| || || || || || |||||||| | | Sbjct 23967 CAAATTGGAACAA--TGTTAAATGCTCGAGAACC--AAAGATAGTAAATGGTCCGCAGAT 23912 Query 164628 ATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGT 164663 || | |||||||| ||||| |||||||||||||| Sbjct 23911 TTTAGATAAATATGTCGGTGAATCAGAAGCTAATGT 23876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595793635383600