Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21] 10,521 sequences; 224,417,174 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq7587 89.7 3e-13 seq7509 86.0 3e-12 seq7521 84.2 1e-11 >seq7587 Length=1787124 Score = 89.7 bits (98), Expect = 3e-13 Identities = 76/92 (83%), Gaps = 2/92 (2%) Strand=Plus/Minus Query 11432 TATAGAATTAA-TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCG 11490 |||| ||| || |||| || || ||||| | || |||||||||| ||||||||||| Sbjct 932695 TATAAAATAAAATAAACCAT-AATTTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCG 932637 Query 11491 TTATTAGCACGACGCTCTRACCAACTGAGCTA 11522 |||||||||||||||||| |||| |||||||| Sbjct 932636 TTATTAGCACGACGCTCTAACCAGCTGAGCTA 932605 Score = 87.8 bits (96), Expect = 9e-13 Identities = 75/92 (82%), Gaps = 1/92 (1%) Strand=Plus/Plus Query 11441 AATAAAAA-ATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 |||||||| || ||||| | || |||||||||| |||||||||||||||||||| Sbjct 968527 AATAAAAACATTTCTTTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCA 968586 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCCGT 11531 ||||||||| |||| |||||||| | ||||| Sbjct 968587 CGACGCTCTAACCAGCTGAGCTATGGAGCCGT 968618 Score = 86.0 bits (94), Expect = 3e-12 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||| | || |||||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 928165 TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 928106 Query 11516 TGAGCTAATGGGCCGT 11531 ||||||| | ||||| Sbjct 928105 TGAGCTATGGAGCCGT 928090 Score = 86.0 bits (94), Expect = 3e-12 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 11442 ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 ||||||| | ||||| | || |||||||||| |||||||||||||||||||||| Sbjct 933776 ATAAAAATATACCTTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACG 933717 Query 11502 ACGCTCTRACCAACTGAGCTA 11522 ||||||| |||| |||||||| Sbjct 933716 ACGCTCTAACCAGCTGAGCTA 933696 Score = 86.0 bits (94), Expect = 3e-12 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 |||||| | || |||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 971207 ATTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCA 971266 Query 11514 ACTGAGCTA 11522 |||||||| Sbjct 971267 GCTGAGCTA 971275 Score = 84.2 bits (92), Expect = 1e-11 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||| | || |||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 931407 TTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAG 931348 Query 11515 CTGAGCTA 11522 |||||||| Sbjct 931347 CTGAGCTA 931340 Score = 82.4 bits (90), Expect = 4e-11 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||| | || |||||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 932231 TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 932172 Query 11516 TGAGCTA 11522 ||||||| Sbjct 932171 TGAGCTA 932165 Score = 82.4 bits (90), Expect = 4e-11 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||| | || |||||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 932953 TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 932894 Query 11516 TGAGCTA 11522 ||||||| Sbjct 932893 TGAGCTA 932887 >seq7509 Length=4842924 Score = 86.0 bits (94), Expect = 3e-12 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||| | || |||||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 1533256 TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 1533315 Query 11516 TGAGCTAATGGGCCGT 11531 ||||||| | ||||| Sbjct 1533316 TGAGCTATGGAGCCGT 1533331 Score = 84.2 bits (92), Expect = 1e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||| | || |||||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 1531355 TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 1531414 Query 11516 TGAGCTAATGGGCCG 11530 ||||||| | |||| Sbjct 1531415 TGAGCTATGGAGCCG 1531429 Score = 84.2 bits (92), Expect = 1e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||| | || |||||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 1595714 TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 1595655 Query 11516 TGAGCTAATGGGCCG 11530 ||||||| | |||| Sbjct 1595654 TGAGCTATGGAGCCG 1595640 >seq7521 Length=12184106 Score = 84.2 bits (92), Expect = 1e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||| | || |||||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 799655 TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 799596 Query 11516 TGAGCTAATGGGCCG 11530 ||||||| | |||| Sbjct 799595 TGAGCTATGGAGCCG 799581 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261457670372596