Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21] 10,521 sequences; 224,417,174 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq7517 129 5e-25 seq7521 109 5e-19 seq7535 102 7e-17 >seq7517 Length=11427604 Score = 129 bits (142), Expect = 5e-25 Identities = 158/214 (74%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGT--GTTGGAATCCT 94856 ||||||||||| || || ||||| || | ||| || ||| || ||| || | || | Sbjct 2898492 ACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGTCCG--TCTT 2898435 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 ||||||| || ||| | ||||| || | ||||||||||||||||| || || ||||| | Sbjct 2898434 CCAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCCTCCTTGTCCT 2898375 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 || || ||||| ||| ||| ||||| | | ||||| || | ||||||||| | Sbjct 2898374 GGATCTTGGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTCT 2898315 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCATGCT 95010 | ||||| || || ||||| ||||||||||| || Sbjct 2898314 TGCCAGTCAGCGTCTTCACGAAGATCTGCATCCT 2898281 Score = 127 bits (140), Expect = 2e-24 Identities = 157/213 (74%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGT--GTTGGAATCCT 94856 ||||||||||| || || ||||| || | ||| || ||| || || || | || | Sbjct 2898720 ACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCCG--TCTT 2898663 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 ||||||| || ||| | ||||| || | ||||||||||||||||| || || ||||| | Sbjct 2898662 CCAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCCTCCTTGTCCT 2898603 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 || || ||||| ||| ||| ||||| | | ||||| || | ||||||||| | Sbjct 2898602 GGATCTTGGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTCT 2898543 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 | ||||| || || ||||| ||||||||||||| Sbjct 2898542 TGCCAGTCAGCGTCTTCACGAAGATCTGCATGC 2898510 Score = 113 bits (124), Expect = 4e-20 Identities = 119/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||||||| || ||| | ||||| || | ||||||||||||||||| || || ||| Sbjct 2898894 TCTTCCAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCCTCCTTG 2898835 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||| ||| ||| ||||| | | ||||| || | ||||||| Sbjct 2898834 TCCTGGATCTTGGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATG 2898775 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || ||||| || || ||||| ||||||||||||| Sbjct 2898774 GTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCATGC 2898738 >seq7521 Length=12184106 Score = 109 bits (120), Expect = 5e-19 Identities = 120/160 (75%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||||||||| || ||| | ||||| | | ||||||||||| ||||| ||||| || Sbjct 9381190 ATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCTTCCTT 9381249 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | || |||||||| || ||| ||||| | | ||||| |||| ||||| Sbjct 9381250 GTCCTGGATCTTTGCCTTCACATTCTCGATCGTGTCCGAAGGCTCGACCTCAAGTGTGAT 9381309 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTT 95011 ||| || || || || |||||||| || ||||||||| || Sbjct 9381310 GGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCATGTTT 9381349 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||| || | || || ||||| || | ||| || ||| || ||| | | Sbjct 8321332 CGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCA 8321273 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||||||| || ||| | ||||| | | ||||||||||| || || ||||| ||| Sbjct 8321272 TCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCTTCCTTG 8321213 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||| || ||| || || | | | ||||| |||| || ||| Sbjct 8321212 TCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATG 8321153 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || ||||| || ||||||||||| Sbjct 8321152 GTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 8321118 >seq7535 Length=3646130 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||| || | |||||| ||||| || | |||||| || || ||| | ||||||| Sbjct 875826 ACCAGATGAAGAGTAGACTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCCTCC 875885 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 ||||| |||||| | ||||| | | ||||||||||| || || || || ||||| | Sbjct 875886 AGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGG 875945 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || ||||| || | | || || | | || || || | |||||||| ||| Sbjct 875946 ATCTTCGCCTTCACATTCTCAATCGTATCCGATGGCTCAACTTCCAGGGTGATGGTCTTT 876005 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || ||||||||||| || |||||||| Sbjct 876006 CCGGTCAGAGTTTTCACGAAAATCTGCAT 876034 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || || ||||| || | |||||| || || ||| | |||||||||||| ||||| Sbjct 876066 GTGGACTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCCTCCAGCTGCTTTCCA 876125 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 | ||||| | | ||||||||||| || || || || ||||| | || || ||||| Sbjct 876126 GCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGGATCTTCGCCTTC 876185 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 || | | || || | | || || || | |||||||| ||||| || |||||| Sbjct 876186 ACATTCTCAATCGTATCCGATGGCTCAACCTCGAGGGTGATGGTCTTTCCGGTCAGAGTT 876245 Query 94991 TTCACAAAGATCTGCAT 95007 ||||| || |||||||| Sbjct 876246 TTCACGAAAATCTGCAT 876262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448232244103560