Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21] 10,521 sequences; 224,417,174 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq7619 197 2e-46 seq7529 188 1e-43 >seq7619 Length=78894 Score = 197 bits (218), Expect = 2e-46 Identities = 204/267 (76%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||| | |||||| ||||||||||| || || |||||||| || ||| Sbjct 71680 GCGAAGCGTCATCGTAAGGTTCTTCGTGATAACATCCAGGGTATTACCAAGCCGGCCATC 71621 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||||||||| ||||||||||| |||||| | ||||| || |||| || |||| Sbjct 71620 CGCCGTCTGGCTCGCCGTGGTGGAGTGAAGCGTATTTCTGGCCTGATCTACGAGGAGACG 71561 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || ||||| | ||||| ||| ||| |||| ||||||| | || |||||| Sbjct 71560 CGTGGCGTACTGAAGGTGTTCCTGGAGAACGTGATCCGTGATGCTGTGACGTACACCGAG 71501 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || |||||||| |||||| | ||||| | ||||| || |||| || || ||| Sbjct 71500 CACGCCAAGCGTAAGACAGTCACCGCTATGGACGTTGTCTACGCGCTGAAGCGCCAGGGC 71441 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | || ||||| ||| ||||| Sbjct 71440 CGCACTCTGTACGGTTTCGGAGGTTAA 71414 Score = 109 bits (120), Expect = 9e-20 Identities = 84/100 (84%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||| | |||||| ||||||||||| || ||||||||||| || ||| Sbjct 72639 GCGAAGCGTCATCGTAAGGTTCTTCGTGATAACATCCAGGGCATCACCAAGCCGGCCATC 72580 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 ||||||||||| || ||||||||||| |||||| | |||| Sbjct 72579 CGTCGTCTGGCGCGCCGTGGTGGAGTGAAGCGTATTTCTG 72540 >seq7529 Length=4681778 Score = 188 bits (208), Expect = 1e-43 Identities = 202/267 (76%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||||| || || ||||||||||| || ||||||||||| || ||| Sbjct 1217795 GCCAAGCGTCATCGCAAGGTGCTGCGCGATAACATCCAGGGCATCACCAAGCCCGCCATC 1217736 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||||||||| ||||| || || |||||| |||| || || |||| ||||||| Sbjct 1217735 CGCCGTCTGGCTCGCCGTGGCGGCGTGAAGCGTATCTCCGGCCTGATCTACGAAGAGACG 1217676 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| ||||| | ||||| ||| ||| |||| ||||| || ||| |||||| Sbjct 1217675 CGCGGTGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGATGCGGTCACCTACACCGAG 1217616 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || ||||| ||||| | |||||| | || || || |||| || || ||| Sbjct 1217615 CACGCCAAGCGCAAGACGGTCACGGCGATGGATGTGGTGTACGCTCTGAAGCGCCAGGGC 1217556 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | | || || || ||| ||||| Sbjct 1217555 CGTACGCTCTACGGATTCGGAGGTTAA 1217529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79065580576053