Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21] 10,521 sequences; 224,417,174 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq7552 215 1e-50 seq7551 102 2e-16 >seq7552 Length=2500597 Score = 215 bits (238), Expect = 1e-50 Identities = 527/787 (67%), Gaps = 14/787 (2%) Strand=Plus/Minus Query 363430 ATCAATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATC 363489 ||||| || | || || || ||||| ||||| ||| | ||||| ||||||||||| ||| Sbjct 1136676 ATCAAGGGAAAAATCGTCGAGCGCCCCCAGCACATGCTGATGCGCGTTGCTATTGGCATC 1136617 Query 363490 CATTGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTATTC 363549 ||| || ||| | ||||| || || || || || || || || | ||| || Sbjct 1136616 CATGGCGAGGACATCGATGCAGCAATCGAGACCTACAATCTGCTGTCCGAGCGTTACTTT 1136557 Query 363550 ACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGC 363609 || |||||| ||||||| |||| || | |||| ||| ||| | || || ||| Sbjct 1136556 ACCCACGCCTCGCCAACTATGTTTGCGGCGGCCACTCAGCGTCCCCAGCTTTCGTCCTGC 1136497 Query 363610 TTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGT 363669 || || | | ||| || ||| ||| ||||| |||| ||||| || ||| | ||| Sbjct 1136496 TTCCTGTTGACCATGTCCGAAGATAGCATTGAGGGCATCTACGACACGCTGAAGCAGTGT 1136437 Query 363670 GCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGCACA 363728 || || ||||| ||| || || || || || | | || | ||| | | || || | Sbjct 1136436 GCCCTAATTTCAAAGTCGGCCGGTGGCATCGGACTGAACG-TGCACTGTATCCGCGCGAA 1136378 Query 363729 GAACAGTTACATTCGCGGCAC-AGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTG 363787 | | ||||| ||| || | ||||| ||||| || ||||| || ||||| || | Sbjct 1136377 GGGAACGTACATCTCCGGTACGAACGGGATT-TCGAACGGTCTGGTGCCGATGCTGCGCG 1136319 Query 363788 TGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTG 363847 | | ||||||| || |||||||||| |||||||| ||||| || || || | Sbjct 1136318 TCTACAACAATACGGCACGGTACGTCGATCAGGGTGGCAACAAGCGGCCTGGAGCATTCG 1136259 Query 363848 CTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACA 363907 | || ||||||||||| |||| ||||| || |||||||| || || |||||||| Sbjct 1136258 CCATCTATCTCGAGCCGTGGCATGGTGATATATTCGAGTTTCTCGATCTGAAGAAAAACA 1136199 Query 363908 CGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATT 363967 | || || ||||| | || ||||| || |||| || ||||| ||| | | |||| | Sbjct 1136198 CCGGCAAGGAGGAGGTCCGCGCACGGGACATGTTTTACGCACTCTGGATACCGGACCTGT 1136139 Query 363968 TTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCT--TTTGCCCACACGAATGTCC 364025 | ||| |||| |||||||| | | ||| || | ||| | ||||| ||||| ||||| Sbjct 1136138 TCATGCAGCGTGTGGAGGC--GAACGAAATGTGGAGTCTGATGTGCCCGCACGATTGTCC 1136081 Query 364026 AGGTCTTTCCGATGTATGGGGTGACGACT--ATGTTGCTCTATACGAAAAGTATGAATCG 364083 || || || || ||||| || || | | ||| || ||| ||| || Sbjct 1136080 CGGGCTATCGGACACCTGGGGCGAAGAGTTCGAGAAGCTGTACACG--GGGTACGAGAAA 1136023 Query 364084 GAGGGAAAGGCTCGTAAGACA-ATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTC 364142 ||||| | | | | || | || ||| | || |||||||| ||||| || || Sbjct 1136022 GAGGG-TCGCTTTATGCGGCAGGTGAAGGCGCAGGATCTGTGGTTTGCGATCATCGAATC 1135964 Query 364143 GCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAA 364202 |||| | || || || ||| || ||| ||||||| ||| | ||||| || || || Sbjct 1135963 GCAGGTGGAAACCGGCGTACCGTACATGCTGTACAAGGATGCTTGCAATCGTAAAAGTAA 1135904 Query 364203 CCAGCAG 364209 ||||||| Sbjct 1135903 CCAGCAG 1135897 >seq7551 Length=2192847 Score = 102 bits (112), Expect = 2e-16 Identities = 218/314 (69%), Gaps = 14/314 (4%) Strand=Plus/Plus Query 111488 AGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAAC 111547 ||| ||| | || || || || || ||||| ||||||||||||||||| |||||||| Sbjct 1923680 AGGGGATTTGGGCCCGGTATATGGGTTTCAGTGGCGCCACTTTGGTGCCACCTACAAAA- 1923738 Query 111548 CATG-CACGACTCATATGATTCA---CAGGGAACTGATCA-ATTACAGAATGTCATTGAT 111602 |||| |||||| || | || ||||||| ||||| | | ||| || || || Sbjct 1923739 CATGCCACGAC---GATTACACAGGTCAGGGAATAGATCAGCTGGCTGAA-GTGATCGAC 1923794 Query 111603 CAAATTAAGAACAA-CCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGC 111661 ||||||||||||| ||| || |||||| || || ||| | || ||||| || || Sbjct 1923795 AAAATTAAGAACAATCCCTAC-GATCGTCGAATCATCATGTGCGCTTGGAATCCTTCTGA 1923853 Query 111662 ATTGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGC-CAGTTTTATGTACACGACG 111720 | || |||||||| || ||||| || || | || ||||||| || || | Sbjct 1923854 TATTCCTAACATGGCACTACCGCCATGCCA-CTGCTTGGCACAGTTTTTCGTTAGTGATG 1923912 Query 111721 GGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTA 111780 | ||| || || || |||||||| || || || || | ||||| || || || |||| Sbjct 1923913 GAGAGCTGTCGTGTCAGATGTATCAACGTTCGGCCGACGTAGGTCTGGGCGTGCCCTTTA 1923972 Query 111781 ATATTGCAAGTTAC 111794 | ||||| || ||| Sbjct 1923973 ACATTGCCAGCTAC 1923986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303177907527422