Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21]
10,521 sequences; 224,417,174 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq7539 170 1e-37
seq1727 131 1e-25
seq7521 102 5e-17
seq7535 89.7 3e-13
>seq7539
Length=3454454
Score = 170 bits (188), Expect = 1e-37
Identities = 165/212 (78%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 6162 ATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG 6221
|||| ||| ||||||| ||||| |||||| | ||| |||||||| ||||| |||||
Sbjct 2512719 ATGGCTACCGTGAACGTGAATCGCAATGTGACCGACATCTTCTACCGGTACAAGATGCCC 2512778
Query 6222 CGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATG 6281
|||||| ||| ||||| ||||||||||||||||| || || || || || || ||||||
Sbjct 2512779 CGCATCAACGCGAAGGTAGAGGGTAAGGGAAACGGCATCAAGACGGTGATCGTGAACATG 2512838
Query 6282 CCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGC 6341
| || || || ||| |||| ||||| || |||||||||||||| || || || |||
Sbjct 2512839 GCCGATGTGGCGCGCGCGATCGGCCGCCCGGCAACCTACCCGACGAAGTACTTTGGCTGC 2512898
Query 6342 GAACTTGGCGCTCAGACGCAGTTTGATCACAA 6373
|| || || ||||| ||||| ||||| || ||
Sbjct 2512899 GAGCTGGGAGCTCAAACGCAATTTGACCATAA 2512930
Score = 158 bits (174), Expect = 8e-34
Identities = 171/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGAC 6434
||||| |||||||| || ||||| ||||| | | ||||||||||||||| | || |||
Sbjct 2512999 AACGAACGCTTCATTGTGAACGGTTCGCACGATGCGGCCAAGCTGCAGGACCTGCTCGAC 2513058
Query 6435 GGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATT 6494
|| || || ||||||||||||||||| | ||| ||||| ||||||||||| || || ||
Sbjct 2513059 GGGTTCATCCGCAAGTTTGTGCTGTGCCCGGAGTGCGACAACCCGGAGACGGATCTGATC 2513118
Query 6495 GTGTCTACCAAGAGAAACACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGGCAAG 6554
|| || |||||| || ||||| ||||||||||| |||||||| | ||| || |
Sbjct 2513119 GTCTCGTCCAAGAAGGGTACGATCTCGCAGGGCTGCAAGGCGTGCGGCTTCCACGGGCCG 2513178
Query 6555 CTGGATTTATCACACAAACTCAACACCTTCATACTGAAGAATCCTCC 6601
|| || | ||||| | ||||| ||||| | ||||| || ||
Sbjct 2513179 CTCGAGGTGAACCACAAGGTGAACACGTTCATCATCAAGAACCCGCC 2513225
>seq1727
Length=1251
Score = 131 bits (144), Expect = 1e-25
Identities = 86/95 (91%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||||||||||||||| ||||||||||| || || ||||||||
Sbjct 168 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTCGATAGTAGATAAGGACAGAGGGAATCTCGT 109
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 108 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 74
>seq7521
Length=12184106
Score = 102 bits (112), Expect = 5e-17
Identities = 161/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149
|||||| | || |||| ||||| |||||| || |||||| || || ||||| || ||
Sbjct 8321345 ACCACCGCGCAGGCGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 8321286
Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209
|| || | || || | || || ||||| || || || || || ||||| | ||
Sbjct 8321285 CAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGG 8321226
Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269
|| ||||| |||||| || || ||||||||||| || ||||| || ||
Sbjct 8321225 GATTCCTTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGAC 8321166
Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320
|| | ||||| || |||||||| | |||||| ||||| |||||||| ||
Sbjct 8321165 CTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCTT 8321115
Score = 89.7 bits (98), Expect = 3e-13
Identities = 136/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 38128 CCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATA 38187
|||| ||||| ||||| || || | | || | || || | || || ||||| || |
Sbjct 9381156 CCTTCTGAATGTTGTAGTCGGAGAGAGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGA 9381215
Query 38188 TTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCT 38247
| || || || ||||| | ||| | |||||| |||||| || ||| |||||||||||
Sbjct 9381216 TCAGACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTCT 9381275
Query 38248 GGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGA 38307
|| || || | || || || | ||| || || || || || | ||||||||||
Sbjct 9381276 CGATCGTGTCCGAAGGCTCGACCTCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTCACGA 9381335
Query 38308 ATATCTGCATGTTT 38321
| ||||||||||||
Sbjct 9381336 AAATCTGCATGTTT 9381349
>seq7535
Length=3646130
Score = 89.7 bits (98), Expect = 3e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||| | || ||| | |||| ||||||||| |||||| || || || || || |||
Sbjct 875808 CCACCACGCAGACGAAGAACCAGATGAAGAGTAGACTCCTTCTGGATGTTATAGTCCGAC 875867
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
| || | || || | || |||||||| || || || || || ||||| | |||
Sbjct 875868 AGGGTGCGGCCATCCTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGGCGGG 875927
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| || || |||||| || || ||||||||||| | ||||| ||||||
Sbjct 875928 ATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGTATCCGATGGCTCAACT 875987
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| | || || || || || |||| ||||||||||| ||||||||
Sbjct 875988 TCCAGGGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCAT 876034
Score = 84.2 bits (92), Expect = 1e-11
Identities = 156/229 (68%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
||||||| | || ||| | |||| |||||| ||| |||||| || || || || || |
Sbjct 876034 TACCACCACGCAGACGGAGAACCAGATGAAGGGTGGACTCCTTCTGGATGTTATAGTCCG 876093
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
||| || | || || | || ||||| || || || || || || ||||| | |
Sbjct 876094 ACAGGGTGCGGCCATCCTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGCG 876153
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
||| || || |||||| || || ||||||||||| | ||||| ||||
Sbjct 876154 GGATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGTATCCGATGGCTCAA 876213
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
| || | || || || || || |||| ||||||||||| ||||||||
Sbjct 876214 CCTCGAGGGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCAT 876262
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334904251499951
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |