Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21] 10,521 sequences; 224,417,174 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq7552 241 1e-58 seq7521 113 4e-20 seq7535 109 5e-19 >seq7552 Length=2500597 Score = 241 bits (266), Expect = 1e-58 Identities = 951/1478 (64%), Gaps = 40/1478 (3%) Strand=Plus/Plus Query 128775 CGACTTGTCCACGGTAAATTTAATAGCGTCCGCTGCCGGCTTGGTGCGCAAATAGTACAT 128834 || ||||||||| ||||| | || || | | ||||||||||| |||| ||||||||| Sbjct 1134886 CGTCTTGTCCACCGTAAACTGGATCGCATTTACGGCCGGCTTGGTACGCAGATAGTACAT 1134945 Query 128835 GCCTGTTTTCAAACCGCTTTTCCAAGTGTGCATGTGAATCGTGGTCAACAATGCGTAGGT 128894 ||| |||||||| || | ||||| | | || |||| |||| | | ||| | Sbjct 1134946 GCCAGTTTTCAACCCCATCTTCCAGCCATAGAAATGGATCGACGTCAGCTTGCCATAGTT 1135005 Query 128895 GGGTTGACTCaaaaaaaTATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGC 128954 || | | ||| || || ||||| ||||| ||||| | ||| ||||| || Sbjct 1135006 TGGCTCCGCGACGTGAATGTTGAACGATTGCGACTGATCGATAAACGCGCCACGATCTGC 1135065 Query 128955 AGCCATACCAATCAAATTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTCTCTCAC 129014 ||||| || | ||||||| || ||||| ||||||||||| || || | | Sbjct 1135066 GGCCATTTTGATGCACGTTTTCACCGAGATCTCCCATACCGTTTTGTACAGATCGCGAAT 1135125 Query 129015 GTGTTTTGGTATTTCTTCAATGTTCTGCA-CGCTGCCGTTGTTTGCAATAATTTTGTTTC 129073 | | ||||| | |||| || || | || | || ||||| | | ||||| ||| Sbjct 1135126 TTCCTGCGGTATAGCCGCAATCTTTTGGATCGAT-CCATTGTTGGACAGAATTTCGTTCT 1135184 Query 129074 GCATCTGTTCGTTGTACAAATTCAGTTTGATCAAATCGTCGGTCAAG-TATTTGTTTATT 129132 ||| | | ||| | || ||| ||||||| | | ||| | | ||| | Sbjct 1135185 TCATGTCGAGATCCCACAGACCCATGTTGGTCAAATCCT-GCAGAAGATGATGGTTCACC 1135243 Query 129133 ACTTGAAAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAAC 129192 || || || || |||| || ||||||| | ||||| ||| ||| ||||||| ||| Sbjct 1135244 ACCTGGAACTCGCCCGACAGCACGCGCCTATTGTAAACGTTCGACGTGTACGGCTCGAAC 1135303 Query 129193 GATTCATTGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCACGCAAAGC 129252 |||||||||||||| | ||||| ||||| | || || ||||| |||| ||| Sbjct 1135304 GATTCATTGTTGCCGAGAATTTGTGCCGTGGAAGCCGTCGGCATCGGGGCCAACAGCAGC 1135363 Query 129253 GAGTTTCGCAAACCGTGCTGTTTAATGTCtttttttAATTGTGTCCAGTCCCACATCGAT 129312 || || || | ||||||| || | || || || | | ||||| ||||| ||| Sbjct 1135364 GAATTGCGAATGCCGTGCTTGGCGATCTTTTCCTTCAACTCGGCCCAGTTCCACA--GAT 1135421 Query 129313 --GTGGGTGTGTGATTCCACAAGTCGTATTGCAATATACCCAAACTGGCGGGACTGGAAA 129370 || ||| | ||||||| ||||| ||||| || ||| || | |||||| Sbjct 1135422 CCGTCGGTTCCTTGTTCCACATCTCGTACTGCAAGATGCCCTTGCTCACCGGACTGCCCT 1135481 Query 129371 AGTAGGAATCGTGCACGCCGTA---AGCTTTTGCCAATTCGCAACTCGCTTCCAATGCGC 129427 ||| | |||| | || | ||| ||||| || || |||||||||| |||| Sbjct 1135482 CGTACGTCTCGTACGGACCATCTCGAGCG---GCCAACTCACAGCTCGCTTCCAGCGCGC 1135538 Query 129428 CAAAATAAATTGTTTCGGCAAT-TTTGGTGTTCAACACTTTG-GCCTGGTCGCTTTCGTA 129485 | | || || |||||| ||| |||| || | | |||| |||| ||||||||||| Sbjct 1135539 CGTAGTAGATGGTTTCG--AATATTTGCTGATTTAGCTTTTGAGCCTCTTCGCTTTCGTA 1135596 Query 129486 CGGCATA-CGCAACATGGCAAATGTGTCGGCCAAACCTTGAATACCCACACCGATGGGTC 129544 ||| ||| |||| || | || | ||||||| || || | || | ||||| || | Sbjct 1135597 CGG-ATAGCGCATCAGGATGAACGCATCGGCCATGCCCTGCACGCCGATCCCGATCGGCC 1135655 Query 129545 GATGTTTTCTATTGGATTTTTGTGCCGACAACAAGGGATAGTAGTTGATGTCTATAATTT 129604 || ||||||| | ||| | || ||||||||| |||| || || |||| Sbjct 1135656 TGTGGCGCATATTGGAGCGCTTAGCCTCCGGCACGGGATAGTAATTGACATCAATGATTT 1135715 Query 129605 TGTTTAAATTCTTGACCACAATTTTCGTTACGTATTTTAACATTTCAAAATTGTAC---T 129661 |||| | ||| || | || | || | || | | || |||| | ||| | Sbjct 1135716 TGTTCAGATTGCGCGTTACGGTCTTAGCGACTTCCTTCAGCTTTGCAAAGTCATACGTTT 1135775 Query 129662 CGCCTACATCGATGTCGACAAATTGATTGACACAAATCGAGGCCAAATTGCAGACGGCAC 129721 | || | | | ||||| || | |||||||||| |||||| || || Sbjct 1135776 TGTCTT----GCTTT--ACAAACATGTTCAAGGCGATCGAGGCCAGATTGCATACCGCTA 1135829 Query 129722 TTTCGTTTTTGTCACTGTACTCGACAATTTCGGCGCACAAATTACTATTTTTAATGGTGC 129781 || | || |||||| |||||||| | |||||| || | ||| ||||||| Sbjct 1135830 CCTCATCCTTCGACGAGTACTCTACAATTTCAGTGCACAAGTTGGAACATTTGATGGTGC 1135889 Query 129782 CCAAATGCTTTTGATTACTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGC 129841 | | || || || |||||||| ||||||||||| ||||||| ||||||||| || Sbjct 1135890 CGATATTCTGCTGGTTACTTTTACGATTGCAAGCATCCTTGTACAGCATGTACGGTACGC 1135949 Query 129842 CCGTTTCGACTTGCGTTTCGACAATGGTCCTGAACAAGTCTCGAGCCTTGATCTGTCTTA 129901 | ||||| || |||| ||||| || | ||| || | ||||| | ||| | | Sbjct 1135950 CGGTTTCCACCTGCGATTCGATGATCGCAAACCACAGATCCTGCGCCTTCACCTGCCGCA 1136009 Query 129902 CAAATTTGCCACATTTCTCGTATGCCACATACAGTTGTTCAAATTCTGAGCC----GTGT 129957 ||| || ||||||||| || ||||| | || || ||| ||| |||| Sbjct 1136010 TAAAGCGACCCTCTTTCTCGTACCCCGTGTACAGCTTCTCGAACTCTTCGCCCCAGGTGT 1136069 Query 129958 ACGGTGTCGAGCAACGGCGATTCACGCGGACACATCAAACTCCACATTCCATCCGCTTCG 130017 || | ||| || | || |||| ||||||| |||||||||| | | ||| || Sbjct 1136070 CCGAT----AGCCCGGGACAATCGTGCGGGCACATCAGACTCCACATTTCGTTCGCCTCC 1136125 Query 130018 ACTCGTTTCATAAACAAATCGGGTACCCACAGGGCGTACAACAAATCTCGCGCTTTTCTA 130077 || || | ||| |||| || |||| ||| || ||||| |||| || || || Sbjct 1136126 ACACGCTGCATGAACAGGTCCGGTATCCAGAGTGCGTAAAACATGTCCCGTGCGCGGACC 1136185 Query 130078 TCCTCGGCACCCATGTTACGTTTCAGTTCAAGGAAATCGTAAATGTCGGCGTGCCACGGT 130137 ||||| || |||| ||||| || || || ||| | || || | |||||||| Sbjct 1136186 TCCTCCTTGCCGGTGTTTTTCTTCAGATCGAGAAACTCGAATATATCACCATGCCACGGC 1136245 Query 130138 TCAACATAAATTGCCATTGCGCCCTTCCG---TTTGCCCCCTTGGTCAACGTGGCGCACG 130194 || | ||| || || | ||| || ||| ||||| || || || |||| || | Sbjct 1136246 TCGAGATAGATGGCGAATGCTCCAGGCCGCTTGTTGCCACCCTGATCGACGTACCGTGCC 1136305 Query 130195 GCATTGTTGTAGACTCGCAACATTGCCTCCAATCCGTT 130232 | |||||||||||| |||| ||| | | ||| ||||| Sbjct 1136306 GTATTGTTGTAGACGCGCAGCATCGGCACCAGACCGTT 1136343 >seq7521 Length=12184106 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| ||||| ||||| || ||||| | ||||| || || |||| ||||| || || | Sbjct 9381349 AAACATGCAGATTTTCGTGAAAACACTCACCGGCAAGACCATCACACTTGAGGTCGAGCC 9381290 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 | || || | || || | || ||| || || |||||||| || ||||| || || Sbjct 9381289 TTCGGACACGATCGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGCATTCCCCCAGA 9381230 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 ||| || ||||| || || |||||||| ||| | |||||| ||||| ||||||| || Sbjct 9381229 TCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACTCTCTCCGACTA 9381170 Query 22395 CAACATTCAAAA 22406 ||||||||| || Sbjct 9381169 CAACATTCAGAA 9381158 >seq7535 Length=3646130 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || |||||| | ||||| || || |||| || || || || | | Sbjct 876262 ATGCAGATTTTCGTGAAAACTCTGACCGGAAAGACCATCACCCTCGAGGTTGAGCCATCG 876203 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | || || || || ||||||||||| || || || ||||| Sbjct 876202 GATACGATTGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGAATCCCGCCAGATCAG 876143 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || || || ||| | |||||| ||||||| | || || || ||| Sbjct 876142 CAGCGTCTGATCTTCGCTGGAAAGCAGCTGGAGGATGGCCGCACCCTGTCGGACTATAAC 876083 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || |||||| | ||| | ||| | || |||| || ||| Sbjct 876082 ATCCAGAAGGAGTCCACCCTTCATCTGGTTCTCCGTCTGCGTGGTGGT 876035 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || |||||| | ||||| || || |||| || ||||| || | | Sbjct 876034 ATGCAGATTTTCGTGAAAACTCTGACCGGAAAGACCATCACCCTGGAAGTTGAGCCATCG 875975 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | || || || || ||||||||||| || || || ||||| Sbjct 875974 GATACGATTGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGAATCCCGCCAGATCAG 875915 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || ||||| || ||| | |||||| ||||||| | || || || ||| Sbjct 875914 CAGCGTCTGATCTTCGCCGGAAAGCAGCTGGAGGATGGCCGCACCCTGTCGGACTATAAC 875855 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || || | ||| | ||| | || |||| || || Sbjct 875854 ATCCAGAAGGAGTCTACTCTTCATCTGGTTCTTCGTCTGCGTGGTGG 875808 Score = 89.7 bits (98), Expect = 4e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||| || || || ||||| || ||||| || || || || || Sbjct 876406 AAGATCCAGGACAAGGAGGGAATCCCGCCAGATCAGCAGCGTCTGATCTTCGCTGGAAAG 876347 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | |||||| ||||||| | || || || ||||| || || ||||| ||| | ||| Sbjct 876346 CAGCTGGAGGATGGCCGCACCCTGTCGGACTATAACATCCAGAAGGAATCGACCCTTCAT 876287 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 | ||| | || |||| || ||| Sbjct 876286 CTGGTTCTCCGTCTGCGTGGTGGT 876263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419674180508365