Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21]
10,521 sequences; 224,417,174 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq7521 158 2e-33
seq7535 140 6e-28
seq7509 93.3 8e-14
seq7526 84.2 4e-11
>seq7521
Length=12184106
Score = 158 bits (174), Expect = 2e-33
Identities = 171/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| ||||| ||||||| |||| || || || ||||| || |||||||| || |||||
Sbjct 8321344 CCACCGCGCAGGCGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 8321285
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | |||||| |||||||| || || | || || || || ||
Sbjct 8321284 AGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGGG 8321225
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| ||||||||||| || ||||| ||||| || |||||| || || | | || ||
Sbjct 8321224 ATTCCTTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACC 8321165
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | ||| ||||| || ||||||||||| |||||||| ||||||||
Sbjct 8321164 TCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 8321118
Score = 136 bits (150), Expect = 7e-27
Identities = 143/188 (76%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333
|| || ||||| || |||||||| || | ||||| || | |||||| |||||||| ||
Sbjct 9381158 TTCTGAATGTTGTAGTCGGAGAGAGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATC 9381217
Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393
|| | || || || || ||||||||||||||||| || ||||||||||| || ||||
Sbjct 9381218 AGACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCG 9381277
Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAAT 68453
|| ||||| | | || || || | |||||||| || || ||||| || || |||||
Sbjct 9381278 ATCGTGTCCGAAGGCTCGACCTCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAA 9381337
Query 68454 ATCTGCAT 68461
||||||||
Sbjct 9381338 ATCTGCAT 9381345
>seq7535
Length=3646130
Score = 140 bits (154), Expect = 6e-28
Identities = 167/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || || | |||| || || || ||||| || ||||||||||| || ||
Sbjct 875808 CCACCACGCAGACGAAGAACCAGATGAAGAGTAGACTCCTTCTGGATGTTATAGTCCGAC 875867
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | |||||| |||||||| || || | || || || || ||
Sbjct 875868 AGGGTGCGGCCATCCTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGGCGGG 875927
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || |||||||| || ||||| ||||| || ||| || || || | || || |||
Sbjct 875928 ATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGTATCCGATGGCTCAACT 875987
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|||| ||||||||| ||||| || || || || ||||| ||||||||
Sbjct 875988 TCCAGGGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCAT 876034
Score = 131 bits (144), Expect = 3e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || || | |||| || || |||||||| || ||||||||||| || ||
Sbjct 876036 CCACCACGCAGACGGAGAACCAGATGAAGGGTGGACTCCTTCTGGATGTTATAGTCCGAC 876095
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | |||||| || ||||| || || | || || || || ||
Sbjct 876096 AGGGTGCGGCCATCCTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGCGGG 876155
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || |||||||| || ||||| ||||| || ||| || || || | || || ||
Sbjct 876156 ATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGTATCCGATGGCTCAACC 876215
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | ||||||||| ||||| || || || || ||||| ||||||||
Sbjct 876216 TCGAGGGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCAT 876262
Score = 100 bits (110), Expect = 5e-16
Identities = 141/197 (72%), Gaps = 1/197 (1%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || || | |||| || || || || || || ||||||||||| || ||
Sbjct 876264 CCACCACGCAGACGGAGAACCAGATGAAGGGTCGATTCCTTCTGGATGTTATAGTCCGAC 876323
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | |||||| || ||||| || || | || || || || ||
Sbjct 876324 AGGGTGCGGCCATCCTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGCGGG 876383
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || |||||||| || ||||| ||||| ||| ||| || || || | || || |||
Sbjct 876384 ATTCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCAATCGTATCCGATGGCTCAACT 876443
Query 68415 TCCAAGGTGATGGTTTT 68431
| | |||||||||| ||
Sbjct 876444 T-CGAGGTGATGGTCTT 876459
>seq7509
Length=4842924
Score = 93.3 bits (102), Expect = 8e-14
Identities = 113/151 (75%), Gaps = 6/151 (4%)
Strand=Plus/Plus
Query 196592 ACGGAAACATTTGCGATGGGCGTCAACGGGCCTGCGAGGACCGTCGTCTTCGA--GT-CG 196648
||||| || |||||||||||||| ||| ||| ||| | || ||| |||| || || ||
Sbjct 2579696 ACGGAGACGTTTGCGATGGGCGTTAACATGCCCGCGCGCACGGTCATCTTTGACAGTACG 2579755
Query 196649 CTCGAGAAGTTCGATGGACACGAGCGCCGCATGTTCCAGCCGCACGAGTTCATCCAAATG 196708
| | ||||||||||| || | | ||| ||| |||||| ||||| || || |||
Sbjct 2579756 CGC---AAGTTCGATGGGCAGGCGTTCCGGCCGTTGCAGCCGTCCGAGTACACGCAGATG 2579812
Query 196709 GCGGGCCGGGCCGGGCGCCGAGGGTTTGACA 196739
||||||||||||||||| || || | ||||
Sbjct 2579813 GCGGGCCGGGCCGGGCGGCGCGGTCTCGACA 2579843
>seq7526
Length=6110091
Score = 84.2 bits (92), Expect = 4e-11
Identities = 104/140 (74%), Gaps = 7/140 (5%)
Strand=Plus/Plus
Query 9895 AGAAGTCTGCGTCAATTGCAAACACGTTGTC--GTCGGCATT---CATGACGCCCGCCTT 9949
|||| || || || | | |||||||||||| | ||| || ||| |||||| |||
Sbjct 4672712 AGAAATCCGCATCGAGCGTAAACACGTTGTCCAGCCGG--TTGGCCATCACGCCCCACTT 4672769
Query 9950 CTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTCGAGGGAAATGAGCTC 10009
||||||||| ||| |||||||||||| | |||||||||||| || |||| |||
Sbjct 4672770 CTGGTACTCGCCAACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTCGAGCGAGATGAACTC 4672829
Query 10010 CATGAAGTCAAAGGGGTTCT 10029
||||||| || |||||||
Sbjct 4672830 CATGAAGCTGAACGGGTTCT 4672849
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921501195134120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |