Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21]
10,521 sequences; 224,417,174 total letters
Query= NC_008953.1
Length=3935
Score E
Sequences producing significant alignments: (Bits) Value
seq7527 91.5 4e-15
>seq7527
Length=9476429
Score = 91.5 bits (100), Expect = 4e-15
Identities = 221/332 (67%), Gaps = 7/332 (2%)
Strand=Plus/Minus
Query 3198 CTGCGAGCTGCTAAACTTTGTCAACGTTGTCGCACAGATATGCTTCATGAATGCCTTTAT 3257
||||||| |||| |||||||||||||| ||| ||||| | ||| ||| | || |
Sbjct 5340120 CTGCGAGGTGCTGAACTTTGTCAACGTGCTCGGCCAGATCTACTTTATGGACTTTTTCCT 5340061
Query 3258 AGGCGAAGACTTTTTGTTGTACGGAATCTATGTTACCTTCTTCAACCAG--GAAGCCGCC 3315
| || || || | |||||| | | |||| ||||| | || | |||||
Sbjct 5340060 CGACGGCGAGTTCTCCACGTACGGTAGCGATGTGGTGCGCTTCACCGAGATGGAGCCGGA 5340001
Query 3316 CATCCGAACATGACGAACCCCATGAAGCGAGTCTTTCCAACAATCACTCGATGTACTTTT 3375
|| | | ||| ||| ||| ||| ||||| || | | || ||||| ||
Sbjct 5340000 G----GAGCGCGGCGA-CCCGATGGCGCGCGTCTTCCCCAAGGTGACCAAGTGTACCTTC 5339946
Query 3376 CACAAATACGGTCCTTCGGGCTCCCTGGAAAACTACGAGGGACTCTGCATCCTCCCGGAG 3435
||||| |||||||| || ||| || | || | ||| || || ||| | || |||
Sbjct 5339945 CACAAGTACGGTCCGTCCGGCAGTGTGCAGAAGTTCGACGGTCTGTGCGTGCTGCCGCTC 5339886
Query 3436 AACGTGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGGTTCTACGTGCTAGCCATC 3495
||| | || ||||||||||||||| | ||||| |||||||||||| | |||| |||||
Sbjct 5339885 AACATCGTGAACGAGAAGATCTACGTGTTCCTGTGGTTCTGGTTCATCCTGCTCACCATC 5339826
Query 3496 ATCAGCGGTATCGTTGTTCTGTACCGCATTGC 3527
| | || ||| | |||||||| ||||
Sbjct 5339825 CTGACTGGCATCTCGCTGATGTACCGCTTTGC 5339794
Score = 80.6 bits (88), Expect = 7e-12
Identities = 96/128 (75%), Gaps = 2/128 (2%)
Strand=Plus/Minus
Query 2675 CCGTGAAGGGCTTAATAAAGCTTCCAACAG-TCTCCATCGACAATGTATTCTTCCGGTTG 2733
|||||||||| | | ||||| | ||| | | ||||||||| |||||||| ||
Sbjct 5340643 CCGTGAAGGGTCTGCTGAAGCTAG-ACCAGGTGTGCATCGACAACAACATCTTCCGGCTG 5340585
Query 2734 CATTACCAGTTCACCGTGATCATCCTCATCGCGTTTTCATTGCTGGTGACTTCGCGGCAG 2793
|| ||| | ||||||||||| || |||||||| || ||||||| || |||||||||
Sbjct 5340584 CACTACAAAGCGACCGTGATCATACTGATCGCGTTCTCGCTGCTGGTCACCTCGCGGCAG 5340525
Query 2794 TACTTCGG 2801
||| ||||
Sbjct 5340524 TACATCGG 5340517
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 12478563883500
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |