Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21] 10,521 sequences; 224,417,174 total letters Query= NC_008953.1 Length=3935 Score E Sequences producing significant alignments: (Bits) Value seq7527 91.5 4e-15 >seq7527 Length=9476429 Score = 91.5 bits (100), Expect = 4e-15 Identities = 221/332 (67%), Gaps = 7/332 (2%) Strand=Plus/Minus Query 3198 CTGCGAGCTGCTAAACTTTGTCAACGTTGTCGCACAGATATGCTTCATGAATGCCTTTAT 3257 ||||||| |||| |||||||||||||| ||| ||||| | ||| ||| | || | Sbjct 5340120 CTGCGAGGTGCTGAACTTTGTCAACGTGCTCGGCCAGATCTACTTTATGGACTTTTTCCT 5340061 Query 3258 AGGCGAAGACTTTTTGTTGTACGGAATCTATGTTACCTTCTTCAACCAG--GAAGCCGCC 3315 | || || || | |||||| | | |||| ||||| | || | ||||| Sbjct 5340060 CGACGGCGAGTTCTCCACGTACGGTAGCGATGTGGTGCGCTTCACCGAGATGGAGCCGGA 5340001 Query 3316 CATCCGAACATGACGAACCCCATGAAGCGAGTCTTTCCAACAATCACTCGATGTACTTTT 3375 || | | ||| ||| ||| ||| ||||| || | | || ||||| || Sbjct 5340000 G----GAGCGCGGCGA-CCCGATGGCGCGCGTCTTCCCCAAGGTGACCAAGTGTACCTTC 5339946 Query 3376 CACAAATACGGTCCTTCGGGCTCCCTGGAAAACTACGAGGGACTCTGCATCCTCCCGGAG 3435 ||||| |||||||| || ||| || | || | ||| || || ||| | || ||| Sbjct 5339945 CACAAGTACGGTCCGTCCGGCAGTGTGCAGAAGTTCGACGGTCTGTGCGTGCTGCCGCTC 5339886 Query 3436 AACGTGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGGTTCTACGTGCTAGCCATC 3495 ||| | || ||||||||||||||| | ||||| |||||||||||| | |||| ||||| Sbjct 5339885 AACATCGTGAACGAGAAGATCTACGTGTTCCTGTGGTTCTGGTTCATCCTGCTCACCATC 5339826 Query 3496 ATCAGCGGTATCGTTGTTCTGTACCGCATTGC 3527 | | || ||| | |||||||| |||| Sbjct 5339825 CTGACTGGCATCTCGCTGATGTACCGCTTTGC 5339794 Score = 80.6 bits (88), Expect = 7e-12 Identities = 96/128 (75%), Gaps = 2/128 (2%) Strand=Plus/Minus Query 2675 CCGTGAAGGGCTTAATAAAGCTTCCAACAG-TCTCCATCGACAATGTATTCTTCCGGTTG 2733 |||||||||| | | ||||| | ||| | | ||||||||| |||||||| || Sbjct 5340643 CCGTGAAGGGTCTGCTGAAGCTAG-ACCAGGTGTGCATCGACAACAACATCTTCCGGCTG 5340585 Query 2734 CATTACCAGTTCACCGTGATCATCCTCATCGCGTTTTCATTGCTGGTGACTTCGCGGCAG 2793 || ||| | ||||||||||| || |||||||| || ||||||| || ||||||||| Sbjct 5340584 CACTACAAAGCGACCGTGATCATACTGATCGCGTTCTCGCTGCTGGTCACCTCGCGGCAG 5340525 Query 2794 TACTTCGG 2801 ||| |||| Sbjct 5340524 TACATCGG 5340517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 12478563883500