Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21] 10,521 sequences; 224,417,174 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq7521 98.7 8e-16 seq7517 91.5 1e-13 seq7535 82.4 6e-11 >seq7521 Length=12184106 Score = 98.7 bits (108), Expect = 8e-16 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 114195 TTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATG 114254 || ||||||||||| ||| | ||| ||| ||| || || || || || ||| |||| Sbjct 9381158 TTCTGAATGTTGTAGTCGGAGAGAGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATC 9381217 Query 114255 AGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCA 114314 |||||||| || || || ||||||||||| ||||| |||||| || | | || Sbjct 9381218 AGACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCG 9381277 Query 114315 ACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 114374 | ||||| | | ||||| || | || | || |||||||| || ||||| || ||| Sbjct 9381278 ATCGTGTCCGAAGGCTCGACCTCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAA 9381337 Query 114375 ATCTGCATG 114383 ||||||||| Sbjct 9381338 ATCTGCATG 9381346 >seq7517 Length=11427604 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/207 (70%), Gaps = 1/207 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| || |||||| ||||| || || ||||| Sbjct 2898480 GTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGTCCGTCTTCCAGCTGCTTACCG 2898421 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| | |||||| || || ||||||||||| || ||||| ||||| || Sbjct 2898420 GCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTC 2898361 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||||| | | ||||| |||| || | || ||||| ||||| || Sbjct 2898360 ACGTTCTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTCTTGCCAGTCAGCGTC 2898301 Query 114366 TTTACAAAAATCTGCATGGCTTAATTA 114392 || || || |||||||| || ||||| Sbjct 2898300 TTCACGAAGATCTGCAT-CCTAAATTA 2898275 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| || ||||| ||||| || || ||||| Sbjct 2898708 GTCGACTCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCCGTCTTCCAGCTGCTTACCG 2898649 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| | |||||| || || ||||||||||| || ||||| ||||| || Sbjct 2898648 GCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTC 2898589 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||||| | | ||||| |||| || | || ||||| ||||| || Sbjct 2898588 ACGTTCTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTCTTGCCAGTCAGCGTC 2898529 Query 114366 TTTACAAAAATCTGCATG 114383 || || || ||||||||| Sbjct 2898528 TTCACGAAGATCTGCATG 2898511 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| || ||||| ||||| || || ||||| Sbjct 2898936 GTCGACTCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCCGTCTTCCAGCTGCTTACCG 2898877 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| | |||||| || || ||||||||||| || ||||| ||||| || Sbjct 2898876 GCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTC 2898817 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||||| | | ||||| |||| || | || ||||| ||||| || Sbjct 2898816 ACGTTCTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTCTTGCCAGTCAGCGTC 2898757 Query 114366 TTTACAAAAATCTGCATG 114383 || || || ||||||||| Sbjct 2898756 TTCACGAAGATCTGCATG 2898739 >seq7535 Length=3646130 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | ||| | ||| | ||||| || || || ||||| || || Sbjct 875805 ATGCCACCACGCAGACGAAGAACCAGATGAAGAGTAGACTCCTTCTGGATGTTATAGTCC 875864 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||| || || || || || ||| |||| |||||||| || || || Sbjct 875865 GACAGGGTGCGGCCATCCTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGGC 875924 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || ||||| ||||| || | | |||| || || | | || Sbjct 875925 GGGATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGTATCCGATGGCTCA 875984 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | || || |||||||||||||| || ||||||||||| Sbjct 875985 ACTTCCAGGGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCAT 876034 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | ||| | ||| | || || || || || ||||| || || Sbjct 876033 ATACCACCACGCAGACGGAGAACCAGATGAAGGGTGGACTCCTTCTGGATGTTATAGTCC 876092 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||| || || || || |||||| |||| |||||||| || || || Sbjct 876093 GACAGGGTGCGGCCATCCTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGC 876152 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || ||||| ||||| || | | |||| || || | | || Sbjct 876153 GGGATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGTATCCGATGGCTCA 876212 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || || |||||||||||||| || ||||||||||| Sbjct 876213 ACCTCGAGGGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCAT 876262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420080528397852