Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21] 10,521 sequences; 224,417,174 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq7552 318 1e-81 seq7526 232 1e-55 >seq7552 Length=2500597 Score = 318 bits (352), Expect = 1e-81 Identities = 939/1428 (66%), Gaps = 66/1428 (5%) Strand=Plus/Plus Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149 |||||||||||| ||||| |||||||||||||| | | ||| | ||| || ||| Sbjct 1135237 GTTCACCACCTGGAACTCGCCCGACAGCACGCGCCTATTGTAAACGTTCGACGTGTACGG 1135296 Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209 ||||| || ||||||| || || || |||||| || |||||||| || | || Sbjct 1135297 CTCGAACGATTCATTGTTGCCGAGAATTTGTGCCGTGGAAGCCGTCGGCATCGGGGCCAA 1135356 Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCA 244269 |||||| || | | ||||||| | ||| | | |||| ||||| ||| Sbjct 1135357 CAGCAGCGAATTGCGAATGCCGTGCTTGGCGATCTTTTCCTTCAACTCGGCCCAGTTCCA 1135416 Query 244270 CATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCT 244329 || ||| | |||| | || |||||| || |||||| | |||||||| Sbjct 1135417 CAGATCCGTCGGTTCCTTG---TT------CCACATCTCGTACTGCAAGATGCCCTTGCT 1135467 Query 244330 GACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTC 244389 || || ||||||||||| ||| ||| ||||| || || ||||| || ||||||| | Sbjct 1135468 CACCGGACTGCCCTCGTACGTCTCGTACGGACCATCTCGAGCGGCCAACTCACAGCTCGC 1135527 Query 244390 GTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGC----GGGCCT 244445 || || ||| ||||||||||||| ||||| || ||| | || | || | |||| Sbjct 1135528 TTCCAGCGCGCCGTAGTAGATGGTTTCGAATAT----TTGCTGATTTAGCTTTTGAGCCT 1135583 Query 244446 TGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGA 244505 ||| | | || || ||||| ||||| | ||||||| ||||||||||||| Sbjct 1135584 CTTCGCTTTCGTACGGATAGCGCATCAGGATGAACGCATCGGCCATGCCCTGCACGCCGA 1135643 Query 244506 TGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGC 244565 | ||||| || ||||| ||| | ||||||||| | || || |||||||| || | ||| Sbjct 1135644 TCCCGATCGGCCTGTGGCGCATATTGGAGCGCTTAGCCTCCGGCACGGGATAGTAATTGA 1135703 Query 244566 CGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAA 244625 | || || | ||||| || ||||| || | | |||| || |||| || Sbjct 1135704 CATCAATGATTTTGTTCAGATTGCGCGTTACGGTCTTAGCGACTTCCTTCAGCTTTGCAA 1135763 Query 244626 AGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGC 244685 |||| ||| | | | || | |||||| ||| | ||||| Sbjct 1135764 AGTCATACGTTTTGTCTTGCT---------------TTACAAACATGTTCAAGGCGATCG 1135808 Query 244686 TGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGA 244745 |||||| ||||| || || ||||| ||| | ||||| ||||| || ||||| | Sbjct 1135809 AGGCCAGATTGCATACCGCTACCTCATCCTTCGACGAGTACTCTACAATTTCAGTGCACA 1135868 Query 244746 GGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGG-CG-TTGCAGGCGTC 244803 ||| || ||||||||||| | | ||| || || |||| || ||||| || || Sbjct 1135869 AGTTGGAACATTTGATGGTGCCGATATTCTGCTGGTT--ACTTTTACGATTGCAAGCATC 1135926 Query 244804 CTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGA-CGCTGTTCCAGA 244862 |||||| |||||| | || | ||||| || | ||| | ||| || ||| ||| | Sbjct 1135927 CTTGTACAGCATGTACGGTACGCCGGTTTCCACCTGCGATTCGATGATCGCAAA-CCACA 1135985 Query 244863 GGTCCCTAGCCTTGACCGTCCTGCG---AGCCTTGCCCTCTGCCTCGTAGCGGGTGTACA 244919 | ||| ||||| ||| || || ||| |||||| |||||| | ||||||| Sbjct 1135986 GATCCTGCGCCTTCACCTGCC-GCATAAAGCGA--CCCTCTTTCTCGTACCCCGTGTACA 1136042 Query 244920 GGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGA 244979 | ||||||||| ||||||| || ||| ||||| || ||||||||| | Sbjct 1136043 GCTTCTCGAACTCTTCGCCCCAGGTGTCCGATAGCCCGGGACAATCGTGCGGGCACATCA 1136102 Query 244980 GACTCCAC---TCGC-CGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGG 245035 |||||||| ||| |||| ||| || | ||||||||| ||||| || |||||||| Sbjct 1136103 GACTCCACATTTCGTTCGCC-TCC---ACACGCTGCATGAACAGGTCCGGTATCCAGAGT 1136158 Query 245036 GCCTGGAAGAGGTCCCTGGTCCTCTG--CTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCA 245093 || | || | ||||| || | | | ||| ||| ||| ||||| ||| |||| || | Sbjct 1136159 GCGTAAAACATGTCCC--GTGCGCGGACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCGA 1136216 Query 245094 AAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCT 245153 ||| || || | || | ||||| ||||| | |||| |||| || || ||||||| Sbjct 1136217 GAAACTCGAATATATCACCATGCCACGGCTCGAGATAGATGGCGAATGCTCCAGGCCGCT 1136276 Query 245154 TGTTGCCTCCCTGGTCCACCATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGCACTA 245213 ||||||| ||||| || || || | |||| ||| |||||| | ||||| | Sbjct 1136277 TGTTGCCACCCTGATCGACGTACCGTGCCGTATTGTTGTAGACGCGCAGCATCGGCACCA 1136336 Query 245214 TGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGA 245273 ||||| || ||||| || || |||||| | ||||| | | || | | Sbjct 1136337 GACCGTTCGAAATCCCGTTCGTACCGGAGATGTACGTTCCCTTCGCGCGGATACAGTGCA 1136396 Query 245274 TGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTG 245333 | || || | || ||||| ||| || || ||||| || ||| | ||||| Sbjct 1136397 CGTTCAGTCCGATGCCACCGGCCGACTTTGAAATTAGGGCACACTGCTTCAGCGTGTCGT 1136456 Query 245334 CTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGG--- 245390 |||||||| ||||| || |||| | | ||| |||||||| || ||||||| Sbjct 1136457 AGATGCCCTCAATGCTATCTTCGGACATGGTCAACAGGAAGCAGGACGAAAGCTGGGGAC 1136516 Query 245391 GCT-TGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTC-GA 245448 ||| | ||| || || |||| ||| || ||||||||||||||| | |||| || Sbjct 1136517 GCTGAGTGGCCGC-CG---CAAACATAGTTGGCGAGGCGTGGGTAAAGTAAC-GCTCGGA 1136571 Query 245449 GAGGAACCCGTACGTCTGGAGCAGAGCGTCGATGTTGTCGCCGTGGAT 245496 || | ||| |||| || || ||||||| ||||| ||||| Sbjct 1136572 CAGCAGATTGTAGGTCTCGATTGCTGCATCGATGTCCTCGCCATGGAT 1136619 >seq7526 Length=6110091 Score = 232 bits (256), Expect = 1e-55 Identities = 318/438 (73%), Gaps = 11/438 (3%) Strand=Plus/Minus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 |||||||| ||||| || ||| |||| ||| | ||| |||||||||||||||||| ||| Sbjct 4673380 CTGTTCAATGCCATCGAAACGCTGCCGTGCGTGAAGCGGAAGGCGGACTGGGCGCTGAAC 4673321 Query 42669 TGGATCGAGAGTCCCGACG--CAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCG 42726 |||||| ||| | || | |||| || |||||| || | || || || | || || | Sbjct 4673320 TGGATCTCGAG-CAAGAAGGCCAACTTT-GGCGAGCGGGTCGTGGCATTCGCTGCGGTTG 4673263 Query 42727 AGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTC-- 42784 |||| ||||||||| || ||||||| | ||||||||||| ||| || ||| | Sbjct 4673262 AGGGTATCTTCTTCAGCGGTAGCTTCGCCGCGATCTTCTGGCTGAAGAAGC--GTGGCCT 4673205 Query 42785 GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGA 42844 |||||| |||||||||||||||||||| || ||| | ||||| |||||||| | || Sbjct 4673204 GATGCCGGGACTCACCTTCTCGAACGAGCTGATCTCGCGCGACGAAGGGCTGCACTGCGA 4673145 Query 42845 CTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCG 42904 |||||||||||| ||||| | | || ||| ||||| ||||||||||| || Sbjct 4673144 CTTTGCCTGCCTGATGTTC---AAGTATCTGGTGCAGAAGCCGTCGAAGGAGCGCGTGAC 4673088 Query 42905 GGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGT 42964 || |||||| || || || ||||||| |||||||||| ||| || | ||||| || Sbjct 4673087 GGAGATCATCCGCGATGCGGTCCTGATCGAGCAGGAGTTCCTGACGAAGGCACTGCCGGT 4673028 Query 42965 GTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCA 43024 | || | ||||||||| || || |||| ||||||| ||| || ||||| | Sbjct 4673027 GGATATGCTGGGCATGAACTGTGATCTGATGTCGCAGTACATTGAGTTTGTGGCCGATCG 4672968 Query 43025 TCTCCTGTGCCAGATGGG 43042 | | ||| | || |||| Sbjct 4672967 TTTGCTGCTCGAGCTGGG 4672950 Score = 116 bits (128), Expect = 7e-21 Identities = 182/256 (71%), Gaps = 12/256 (5%) Strand=Plus/Minus Query 42336 TGGACCGCCGAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGT--CTG 42393 ||||| | || ||| |||| ||| ||||||| | | | ||||||||| ||| | | Sbjct 4673753 TGGACGGTGGAAGAGGTTGATCTGTCCAAGGATATGAAGGACTGGGAGTCGCTGAAACCG 4673694 Query 42394 AG--AACGAAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCAT 42451 || |||| | | || | || | | ||||||||||| ||||| || ||||| || Sbjct 4673693 AGCGAACGCCACTTCATTTCCCA----CGTGCTGGCCTTCTTTGCCGCGTCCGACGGTAT 4673638 Query 42452 AGTCAATGAGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAG--TACTTTGAGGCGCGC 42509 || || ||||| |||| | |||| | ||||||||| ||| ||||||||| Sbjct 4673637 CGTGAACGAGAATCTGGTGGAACGCTTCAGCCAGGAGGTGCAGGTTACG--GAGGCGCGC 4673580 Query 42510 TGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTG 42569 |||||||||||||||||||| || || || || |||||| ||| ||||| | ||| Sbjct 4673579 TGCTTCTACGGCTTCCAGATTGCGATGGAAAATGTGCACAGCGAGATGTACTCGCTGCTG 4673520 Query 42570 CTCAACACGTACATCC 42585 || |||||||||||| Sbjct 4673519 ATCGACACGTACATCC 4673504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944215007590960