Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21] 10,521 sequences; 224,417,174 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq7535 152 1e-31 seq7521 136 9e-27 seq7517 125 2e-23 >seq7535 Length=3646130 Score = 152 bits (168), Expect = 1e-31 Identities = 179/238 (75%), Gaps = 13/238 (5%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || | ||| || ||||||| || || || ||||| ||||||| Sbjct 875804 CATG-CCACCACGCAGACGAAGAACCAGATGAAGAGTAGACTCCTTCTGGATGTTATAGT 875862 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | || ||||| || || || | || ||||| ||||||||||||||||| || || Sbjct 875863 CCGACAGGGTGCGGCCATCCTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTG---AT 875919 Query 288362 CT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 || |||||||| || || |||||||| ||||| ||||| || || || | ||| || Sbjct 875920 CTGGCGGGATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGTATC---CG 875976 Query 288419 AT---TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| || ||||| ||||| ||||||||||| || ||||| |||||||| Sbjct 875977 ATGGCTCAACTTCCAGGGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCAT 876034 Score = 152 bits (168), Expect = 1e-31 Identities = 175/233 (75%), Gaps = 12/233 (5%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || ||||||| ||| || || ||||| |||||||| | Sbjct 876036 CCACCACGCAGACGGAGAACCAGATGAAGGGTGGACTCCTTCTGGATGTTATAGTCCGAC 876095 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 || ||||| || || || | || ||||| ||||||||||||||||| || |||| Sbjct 876096 AGGGTGCGGCCATCCTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTG---ATCTGGC 876152 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT--- 288420 |||||||| || || |||||||| ||||| ||||| || || || | ||| |||| Sbjct 876153 GGGATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGTATC---CGATGGC 876209 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| ||||| ||||||||||| || ||||| |||||||| Sbjct 876210 TCAACCTCGAGGGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCAT 876262 Score = 122 bits (134), Expect = 2e-22 Identities = 151/203 (74%), Gaps = 13/203 (6%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || ||||||| || ||| || ||||| |||||||| | Sbjct 876264 CCACCACGCAGACGGAGAACCAGATGAAGGGTCGATTCCTTCTGGATGTTATAGTCCGAC 876323 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 || ||||| || || || | || ||||| ||||||||||||||||| || |||| Sbjct 876324 AGGGTGCGGCCATCCTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTG---ATCTGGC 876380 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT--- 288420 |||||||| || || |||||||| ||||| |||||||| || || | ||| |||| Sbjct 876381 GGGATTCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCAATCGTATC---CGATGGC 876437 Query 288421 TCTACTTCGAGCGTGATCGTCTT 288443 || |||||||| ||||| ||||| Sbjct 876438 TCAACTTCGAG-GTGATGGTCTT 876459 >seq7521 Length=12184106 Score = 136 bits (150), Expect = 9e-27 Identities = 169/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| || | || || ||||||| || || || ||||| || ||||||| Sbjct 8321344 CCACCGCGCAGGCGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 8321285 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG- 288365 |||||||| || || || | || || || ||||||||||||||||| ||| ||||| Sbjct 8321284 AGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGA---TCTGGC 8321228 Query 288366 --GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||||||| || |||||||| ||||| ||||| || || || | ||| | || Sbjct 8321227 GGGATTCCTTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCG 8321168 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || ||||| || || || || |||||||| |||||||| Sbjct 8321167 ACCTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 8321118 Score = 111 bits (122), Expect = 4e-19 Identities = 140/191 (73%), Gaps = 6/191 (3%) Strand=Plus/Plus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || || || || ||||||| ||| ||||| || || || | || || || ||||||||| Sbjct 9381158 TTCTGAATGTTGTAGTCGGAGAGAGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATC 9381217 Query 288346 AGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||||||| || ||||||| || ||||| || |||||||| || || ||||| || Sbjct 9381218 AGACGCTGCTG---ATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTC 9381274 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || | || || || || ||||| ||||| ||||| || || || ||| Sbjct 9381275 TCGATCGTGTCCGAAGGCTCGACCTCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTCACG 9381334 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 9381335 AAAATCTGCAT 9381345 >seq7517 Length=11427604 Score = 125 bits (138), Expect = 2e-23 Identities = 145/194 (75%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||| || || ||||||||||| | || || || |||||| Sbjct 2898474 TCCTTCTGGATGTTGTAGTCGGACAGAGTACGTCCGTCTTCCAGCTGCTTACCGGCGAAG 2898415 Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| |||||| || |||| || || || || || |||||||| || || |||||| Sbjct 2898414 ATCAAACGCTGCTG---ATCTGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACG 2898358 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || || || || || |||||||| ||||| || ||||| ||||| Sbjct 2898357 TTCTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTCTTGCCAGTCAGCGTCTTC 2898298 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 2898297 ACGAAGATCTGCAT 2898284 Score = 122 bits (134), Expect = 2e-22 Identities = 144/194 (74%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||| | || ||||||||||| | || || || |||||| Sbjct 2898702 TCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCCGTCTTCCAGCTGCTTACCGGCGAAG 2898643 Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| |||||| || |||| || || || || || |||||||| || || |||||| Sbjct 2898642 ATCAAACGCTGCTG---ATCTGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACG 2898586 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || || || || || |||||||| ||||| || ||||| ||||| Sbjct 2898585 TTCTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTCTTGCCAGTCAGCGTCTTC 2898526 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 2898525 ACGAAGATCTGCAT 2898512 Score = 122 bits (134), Expect = 2e-22 Identities = 144/194 (74%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||| | || ||||||||||| | || || || |||||| Sbjct 2898930 TCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCCGTCTTCCAGCTGCTTACCGGCGAAG 2898871 Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| |||||| || |||| || || || || || |||||||| || || |||||| Sbjct 2898870 ATCAAACGCTGCTG---ATCTGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACG 2898814 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || || || || || |||||||| ||||| || ||||| ||||| Sbjct 2898813 TTCTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTCTTGCCAGTCAGCGTCTTC 2898754 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 2898753 ACGAAGATCTGCAT 2898740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179495382218238