Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21]
10,521 sequences; 224,417,174 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq7535 152 1e-31
seq7521 136 9e-27
seq7517 125 2e-23
>seq7535
Length=3646130
Score = 152 bits (168), Expect = 1e-31
Identities = 179/238 (75%), Gaps = 13/238 (5%)
Strand=Plus/Plus
Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301
|||| ||||| || || | ||| || ||||||| || || || ||||| |||||||
Sbjct 875804 CATG-CCACCACGCAGACGAAGAACCAGATGAAGAGTAGACTCCTTCTGGATGTTATAGT 875862
Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361
| | || ||||| || || || | || ||||| ||||||||||||||||| || ||
Sbjct 875863 CCGACAGGGTGCGGCCATCCTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTG---AT 875919
Query 288362 CT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418
|| |||||||| || || |||||||| ||||| ||||| || || || | ||| ||
Sbjct 875920 CTGGCGGGATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGTATC---CG 875976
Query 288419 AT---TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || ||||| || ||||| ||||| ||||||||||| || ||||| ||||||||
Sbjct 875977 ATGGCTCAACTTCCAGGGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCAT 876034
Score = 152 bits (168), Expect = 1e-31
Identities = 175/233 (75%), Gaps = 12/233 (5%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || || | || || ||||||| ||| || || ||||| |||||||| |
Sbjct 876036 CCACCACGCAGACGGAGAACCAGATGAAGGGTGGACTCCTTCTGGATGTTATAGTCCGAC 876095
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363
|| ||||| || || || | || ||||| ||||||||||||||||| || ||||
Sbjct 876096 AGGGTGCGGCCATCCTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTG---ATCTGGC 876152
Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT--- 288420
|||||||| || || |||||||| ||||| ||||| || || || | ||| ||||
Sbjct 876153 GGGATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGTATC---CGATGGC 876209
Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || ||||| ||||| ||||| ||||||||||| || ||||| ||||||||
Sbjct 876210 TCAACCTCGAGGGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCAT 876262
Score = 122 bits (134), Expect = 2e-22
Identities = 151/203 (74%), Gaps = 13/203 (6%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || || | || || ||||||| || ||| || ||||| |||||||| |
Sbjct 876264 CCACCACGCAGACGGAGAACCAGATGAAGGGTCGATTCCTTCTGGATGTTATAGTCCGAC 876323
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363
|| ||||| || || || | || ||||| ||||||||||||||||| || ||||
Sbjct 876324 AGGGTGCGGCCATCCTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTG---ATCTGGC 876380
Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT--- 288420
|||||||| || || |||||||| ||||| |||||||| || || | ||| ||||
Sbjct 876381 GGGATTCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCAATCGTATC---CGATGGC 876437
Query 288421 TCTACTTCGAGCGTGATCGTCTT 288443
|| |||||||| ||||| |||||
Sbjct 876438 TCAACTTCGAG-GTGATGGTCTT 876459
>seq7521
Length=12184106
Score = 136 bits (150), Expect = 9e-27
Identities = 169/230 (73%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
|||||||| || | || || ||||||| || || || ||||| || |||||||
Sbjct 8321344 CCACCGCGCAGGCGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 8321285
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG- 288365
|||||||| || || || | || || || ||||||||||||||||| ||| |||||
Sbjct 8321284 AGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGA---TCTGGC 8321228
Query 288366 --GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
||||||||| || |||||||| ||||| ||||| || || || | ||| | ||
Sbjct 8321227 GGGATTCCTTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCG 8321168
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || || || ||||| || || || || |||||||| ||||||||
Sbjct 8321167 ACCTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 8321118
Score = 111 bits (122), Expect = 4e-19
Identities = 140/191 (73%), Gaps = 6/191 (3%)
Strand=Plus/Plus
Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345
|| || || || ||||||| ||| ||||| || || || | || || || |||||||||
Sbjct 9381158 TTCTGAATGTTGTAGTCGGAGAGAGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATC 9381217
Query 288346 AGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
|||||||| || ||||||| || ||||| || |||||||| || || ||||| ||
Sbjct 9381218 AGACGCTGCTG---ATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTC 9381274
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| || | || | || || || || ||||| ||||| ||||| || || || |||
Sbjct 9381275 TCGATCGTGTCCGAAGGCTCGACCTCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTCACG 9381334
Query 288463 AATATCTGCAT 288473
|| ||||||||
Sbjct 9381335 AAAATCTGCAT 9381345
>seq7517
Length=11427604
Score = 125 bits (138), Expect = 2e-23
Identities = 145/194 (75%), Gaps = 6/194 (3%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || ||||| || ||||||| || || ||||||||||| | || || || ||||||
Sbjct 2898474 TCCTTCTGGATGTTGTAGTCGGACAGAGTACGTCCGTCTTCCAGCTGCTTACCGGCGAAG 2898415
Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399
|||| |||||| || |||| || || || || || |||||||| || || ||||||
Sbjct 2898414 ATCAAACGCTGCTG---ATCTGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACG 2898358
Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459
|| || || | || || || || || |||||||| ||||| || ||||| |||||
Sbjct 2898357 TTCTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTCTTGCCAGTCAGCGTCTTC 2898298
Query 288460 ACGAATATCTGCAT 288473
||||| ||||||||
Sbjct 2898297 ACGAAGATCTGCAT 2898284
Score = 122 bits (134), Expect = 2e-22
Identities = 144/194 (74%), Gaps = 6/194 (3%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || ||||| || ||||||| | || ||||||||||| | || || || ||||||
Sbjct 2898702 TCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCCGTCTTCCAGCTGCTTACCGGCGAAG 2898643
Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399
|||| |||||| || |||| || || || || || |||||||| || || ||||||
Sbjct 2898642 ATCAAACGCTGCTG---ATCTGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACG 2898586
Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459
|| || || | || || || || || |||||||| ||||| || ||||| |||||
Sbjct 2898585 TTCTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTCTTGCCAGTCAGCGTCTTC 2898526
Query 288460 ACGAATATCTGCAT 288473
||||| ||||||||
Sbjct 2898525 ACGAAGATCTGCAT 2898512
Score = 122 bits (134), Expect = 2e-22
Identities = 144/194 (74%), Gaps = 6/194 (3%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || ||||| || ||||||| | || ||||||||||| | || || || ||||||
Sbjct 2898930 TCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCCGTCTTCCAGCTGCTTACCGGCGAAG 2898871
Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399
|||| |||||| || |||| || || || || || |||||||| || || ||||||
Sbjct 2898870 ATCAAACGCTGCTG---ATCTGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACG 2898814
Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459
|| || || | || || || || || |||||||| ||||| || ||||| |||||
Sbjct 2898813 TTCTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTCTTGCCAGTCAGCGTCTTC 2898754
Query 288460 ACGAATATCTGCAT 288473
||||| ||||||||
Sbjct 2898753 ACGAAGATCTGCAT 2898740
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179495382218238
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |