Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21] 10,521 sequences; 224,417,174 total letters Query= NC_010105.1 Length=170523 Score E Sequences producing significant alignments: (Bits) Value seq236 116 4e-21 >seq236 Length=1144 Score = 116 bits (128), Expect = 4e-21 Identities = 259/385 (67%), Gaps = 14/385 (4%) Strand=Plus/Minus Query 141993 TTTCAAAACGAGCAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGC 142052 ||||| || ||||| |||| ||||||| |||||| || || || | || ||||| Sbjct 1144 TTTCAGCACCAGCAGGCTTTCGACTTCCAGATGCCACATCGGGTAGAACAACGTGGCAGC 1085 Query 142053 GCCGCCACGGATTCCACCTTGTGAACATGATTTAACAGCAGTCTGGAAATGTTTCCAGAA 142112 || ||||| | || || || || || ||||| || || ||||||||||| || |||| Sbjct 1084 ACCACCACGCACGCCGCCCTGAGAGCAGGATTTTACGGCGGTCTGGAAATGCTTGTAGAA 1025 Query 142113 TGGAATAACACCGGTATGTTTGACTTCACCCATGCCAATACGAGAACCTTCAGCACGAAT 142172 ||||| |||||||| |||| || || ||| | ||| ||||| || Sbjct 1024 CGGAATGCAGCCGGTATGGAAAGCTTCTCCACCGCGAATCGGGCTACCCAACGCACGGAT 965 Query 142173 CATACCAACGTTGATACCAATACCTGCACGTTTAGAAATGTATT---CAAT---TATTGA 142226 || ||||||| || || || ||||||| |||| ||||| |||| |||| Sbjct 964 GCGGCCCGCGTTGATGCCGATCCCCGCACGTTGGGAAACGTATTTCACAATGGCGCTTGA 905 Query 142227 GTTGGCAGTTTTGTTAATAGATTTCAGCGAGTCGCCTGCTTCAATAACCACACAAGAACT 142286 | ||||| ||||| || | ||| || || ||| || | |||||| || || Sbjct 904 GGTGGCA------TTAATCGAATCCAGGCTATCACCACATTCGATCAGCACACAGGAGCT 851 Query 142287 AAATTGACGAGTTGGAGTACGTGCACCAGCCATAATAGGAGTAGGCAACGAAA-CCTGAC 142345 || ||||| ||||| ||||| | |||| ||| || || ||||||| |||| ||| Sbjct 850 GAACTGACGGGTTGGCGTACGCACGCCAGACATGATTGGCGTAGGCAGAGAAATTTTGAA 791 Query 142346 GAGTACTTACAGCGTCATAAAAACG 142370 | ||| | |||||||| ||||| Sbjct 790 G-GTAGAAATGGCGTCATAGAAACG 767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545473853934280