Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21] 10,521 sequences; 224,417,174 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq7552 109 7e-19 seq7516 107 2e-18 >seq7552 Length=2500597 Score = 109 bits (120), Expect = 7e-19 Identities = 792/1253 (63%), Gaps = 45/1253 (4%) Strand=Plus/Plus Query 113597 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGAC 113656 || || |||||||| || || || | |||| ||||||| |||| | ||| ||||| | | Sbjct 1134932 CGCAGATAGTACATGCCAGTTTTCAACCCCATCTTCCAGCCATAGAAATGGATCGACGTC 1134991 Query 113657 AACTTGG-AGAGTGTTGGACTTTCCATGAAGAG---GTTCATACTTTGGGATTGATCGAT 113712 | |||| | ||| |||| ||| || | | ||| | ||| || |||||||| Sbjct 1134992 AGCTTGCCATAGT-TTGGC---TCCGCGACGTGAATGTTGAACGATTGCGACTGATCGAT 1135047 Query 113713 GAA-GCGTCCACGATCCGCCGCCATATCAAT-CACATCCTTCATCTTGATTTCCCACACA 113770 || ||| |||||||| || ||||| | || ||| | |||| | ||| ||||| || Sbjct 1135048 AAACGCG-CCACGATCTGCGGCCATTTTGATGCACGTT-TTCACCGAGATCTCCCATACC 1135105 Query 113771 GTTCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGAGCCACCC 113830 ||| |||| || | ||| || | || ||| || | || |||||||| || ||| Sbjct 1135106 GTTTTGTACAGATCGCGAATTTCCTGCGGTATAGCCGCAATCTTTTGGATCGATCCATTG 1135165 Query 113831 GCCTTGACCATGAGATC---CTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCC 113887 ||| || | || |||||| || ||| ||||| || || | | |||| Sbjct 1135166 ---TTGGACAGAATTTCGTTCTTCATGTCGAGATCCCACAGACCCATGTTGGTCAAATCC 1135222 Query 113888 TCCACGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATA 113947 | || ||||| | || || || ||||| |||| || ||| || || | Sbjct 1135223 TGCAGAAGATGATGGTTCACCACCTGGAACTCGCCCGACAGCACGCGCCTATTGTAAACG 1135282 Query 113948 TTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTG 114007 || | |||||| ||||| || | |||||||| || | ||||| || ||||| || || Sbjct 1135283 TTCGACGTGTACGGCTCGAACGATTCATTGTTGCCGAGAATTTGTGCCGTGGAAGCCGTC 1135342 Query 114008 GGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGG 114067 ||||| || |||| || || || || | || | | || |||||| | Sbjct 1135343 GGCATCGGGGCCAACAGCAGCGAATTGCGAATGCCGTGCTTGGCGATCTTTTCCTTCAAC 1135402 Query 114068 GCGTCCCAGT--CGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATAC 114125 || |||||| | || | | | | ||| | |||||| || |||| | ||| | Sbjct 1135403 TCGGCCCAGTTCCACAGATCCG--TCGGTTCCTTGTTCCACATCTCGTACTGCAAGATGC 1135460 Query 114126 CTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGG 114185 | | | | || ||||| | |||||||| || || || | ||||| || Sbjct 1135461 CCTTGCTCACCGGACTGCCCTCGTACGTCTCGTACGGACCATCTCGAGCGGCCAACTCAC 1135520 Query 114186 AGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGG 114245 ||||||| || || || ||| || || || || || || | ||| | || || | Sbjct 1135521 AGCTCGCTTCCAGCGCGCCGTAGTAGATGGTTTCGAATATTTGCTGATTTA--GCTTTTG 1135578 Query 114246 --CCTCGTCGGAATCAAACGCGAGTCGGCA-CAAAATAAATACATCCGCGAGACCTTGGA 114302 |||| ||| || ||| || ||| || || || |||| || | || || | Sbjct 1135579 AGCCTCTTCGCTTTCGTACG-GATAGCGCATCAGGATGAACGCATCGGCCATGCCCTGCA 1135637 Query 114303 CACCGAGGCCAATTGGGCGATGTCTCATATTAGA---CTTTCGAGCGGTCTCCACGGGAT 114359 | |||| || || || | || | |||||| || ||| ||| | |||||||| Sbjct 1135638 CGCCGATCCCGATCGGCCTGTGGCGCATATTGGAGCGCTT---AGCCTCCGGCACGGGAT 1135694 Query 114360 AAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAA 114419 | |||| ||| || | | || ||||| || || ||| | || ||| | | Sbjct 1135695 AGTAATTGACATCAATGATTTTGTTCAGATTGCGCGTTACGGTCTTAGCGACTTCCTTCA 1135754 Query 114420 GCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACG 114479 ||||| | | ||| | | | |||| || ||| || | | |||||| || | Sbjct 1135755 GCTTTGCAAAGTCATACGTTT---TGTCTTGCTTTACAAACATGTTCAAGGCGATCGAGG 1135811 Query 114480 CCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAAT 114539 ||||||| || || | ||||||||| | |||||||| |||||| || ||||| | Sbjct 1135812 CCAGATTGCATACCGCTACCTCATCCTTCGACGAGTACTCTACAATTTCAGTGCACAAGT 1135871 Query 114540 TTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTG--TTACACGCATCCTT 114597 | |||| || |||||||| | |||| || || ||||| || || |||||||| Sbjct 1135872 TGGAACATTTGATGGTGCCGATATTCTGCTGGTT--ACTTTTACGATTGCAAGCATCCTT 1135929 Query 114598 GTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACAT- 114656 ||| |||||||| || || || ||| || || | || || || ||| | || Sbjct 1135930 GTACAGCATGTACGGTACGCCGGTTTCCACCTGCGATTCGATGATCGCAAACCACAGATC 1135989 Query 114657 CGGCGGCTGGCACAGTGGCG-TTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCT 114715 | ||| || ||| || || | || ||||| | ||||||| ||||| || Sbjct 1135990 CTGCGCCT-TCAC-CTGCCGCATAAAGCGACCCTCTTTCTCGTACCCCGTGTACAGCTTC 1136047 Query 114716 TCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGAC 114775 || |||||||| ||| || || || ||||| || | | ||||| | ||| | Sbjct 1136048 TCGAACTCTTCGCCCCAGGTGTCCGATAGCCCGGGACAATCGTGCGGGCACATCAGACTC 1136107 Query 114776 CATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGC 114828 || | | |||| ||||||| |||||| ||||| || |||||||| || Sbjct 1136108 CACATTTCGTTCGCCTCCACACGCTGCATGAACAGGTCCGGTATCCAGAGTGC 1136160 >seq7516 Length=3907879 Score = 107 bits (118), Expect = 2e-18 Identities = 201/290 (69%), Gaps = 4/290 (1%) Strand=Plus/Minus Query 171881 GTGAAGATGTACCTCGTTTGAGACGCA-TCTTTGCCACCCATGAGACGCGTCCCAAATTG 171939 |||||||||||||| | | ||| || ||||||||| | || ||||| || || || Sbjct 2870249 GTGAAGATGTACCTGGGGCTGG-CGCTGTCCTTGCCACCCGTCAGCCGCGTACCGAACTG 2870191 Query 171940 ACCACACGGTTCAAGGAGATTGATATTGTTTGAACCCATGTAGTCATTGGCCAACTTGAC 171999 ||| | ||| | || |||||||| ||||| || | ||||| | |||| |||| Sbjct 2870190 ACCGCCCGGGTACAGCAGATTGATGTTGTTGCTGCCGACGTAGTTCTGCGCCAGGTTGAT 2870131 Query 172000 AATCGTATCCGCGAGGGAGACTTCACCGTGATGGTAGGCCGACTTGTCCGCGACATACGC 172059 ||||| ||| || | || |||||||||||||| ||||| ||||| || | | Sbjct 2870130 GATCGTCGAGCAGAGCGACATCTCGCCGTGATGGTAGGCGGACTTTTCCGCCACCGAACC 2870071 Query 172060 CGCCAACTGTGCCACCTTCATCTCATCCTTGAGGTTCTTG-TGGAAGCACGCATACATGA 172118 |||| ||| |||||||||| ||| |||| | ||| | | |||||||| |||| | Sbjct 2870070 GGCCAGCTGGGCCACCTTCACCTCGCGCTTGTCG-TCTCGCTTGAAGCACGTGTACAGCA 2870012 Query 172119 CCTTTCTCTGTGAAGGCTTGAGGCCGTCGGCCATGTGCGCGATGGAACGC 172168 |||| | ||| ||||| | ||||| |||| || ||||| ||| Sbjct 2870011 CCTTGCGCTGGCCCGGCTTCAACCCGTCCAGCATGCACGGAATGGAGCGC 2869962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597275040534680