Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21] 10,521 sequences; 224,417,174 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq7517 120 3e-22 seq9468 100 3e-16 seq7535 95.1 1e-14 seq7578 89.7 6e-13 seq8650 87.8 2e-12 seq7566 87.8 2e-12 seq7527 87.8 2e-12 seq7523 87.8 2e-12 seq7562 86.0 7e-12 >seq7517 Length=11427604 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 ||||| ||||| || |||||| || || ||||| || | |||||| || |||| || Sbjct 2898492 ACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGTCCGTCTTCC 2898433 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 ||||||||||| ||||| || | |||||||| || | || | || |||||||||| | Sbjct 2898432 AGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGG 2898373 Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 42179 || || || | || | | |||||| || || || || | ||||||||| ||| Sbjct 2898372 ATCTTGGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTCTTG 2898313 Query 42180 CCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || |||||||| || ||||| ||||| Sbjct 2898312 CCAGTCAGCGTCTTCACGAAGATCTGCAT 2898284 Score = 111 bits (122), Expect = 2e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 ||||| ||||| || |||||| || || ||||| || | || || || |||| || Sbjct 2898720 ACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCCGTCTTCC 2898661 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 ||||||||||| ||||| || | |||||||| || | || | || |||||||||| | Sbjct 2898660 AGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGG 2898601 Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 42179 || || || | || | | |||||| || || || || | ||||||||| ||| Sbjct 2898600 ATCTTGGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTCTTG 2898541 Query 42180 CCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || |||||||| || ||||| ||||| Sbjct 2898540 CCAGTCAGCGTCTTCACGAAGATCTGCAT 2898512 Score = 104 bits (114), Expect = 3e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || | || || || |||| || ||||||||||| ||||| Sbjct 2898931 CTCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCCGTCTTCCAGCTGCTTACCGGCGAA 2898872 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || | |||||||| || | || | || |||||||||| ||| || || | | Sbjct 2898871 GATCAAACGCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTT 2898812 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | |||||| || || || || | ||||||||| ||||| || |||||||| || Sbjct 2898811 CTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTCTTGCCAGTCAGCGTCTTCAC 2898752 Query 42197 AAAGATTTGCAT 42208 ||||| ||||| Sbjct 2898751 GAAGATCTGCAT 2898740 >seq9468 Length=22518 Score = 100 bits (110), Expect = 3e-16 Identities = 87/107 (81%), Gaps = 6/107 (6%) Strand=Plus/Minus Query 56978 ACAACAAATTA-ACGTTTATGAAA-----AATTTTCTCCTCGGCAAGAAATCGAACCCTG 57031 |||||||||| | ||||| ||| |||||||||| || | | |||||||||| | Sbjct 12810 ACAACAAATTCTATATTTATAAAATAAACAATTTTCTCCCCGACGGGGAATCGAACCCCG 12751 Query 57032 GTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 57078 |||||||||||||||||||| ||||| |||||||||||| |||||| Sbjct 12750 GTCTCCCGCGTGACAGGCGGGGATACTGACCACTATACTATCGAGGA 12704 Score = 95.1 bits (104), Expect = 1e-14 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 57000 AAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTC 57059 |||| |||||| || | | |||||||||| ||||||||||||||||||||| ||||| Sbjct 11058 AAATATTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTG 10999 Query 57060 ACCACTATACTACCGAGGAT 57079 |||||||||||| ||||||| Sbjct 10998 ACCACTATACTATCGAGGAT 10979 Score = 89.7 bits (98), Expect = 6e-13 Identities = 70/83 (84%), Gaps = 3/83 (4%) Strand=Plus/Minus Query 57000 AAATTTTCTCCTCGGCAA---GAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 ||| ||||||||| | | | |||||||||| ||||||||||||||||||||| ||| Sbjct 14075 AAAATTTCTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 14016 Query 57057 CTCACCACTATACTACCGAGGAT 57079 || |||||||||||| ||||||| Sbjct 14015 CTGACCACTATACTATCGAGGAT 13993 >seq7535 Length=3646130 Score = 95.1 bits (104), Expect = 1e-14 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 57003 TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 57062 |||||||| || | | |||||||||| ||||||||||||||||||||| ||||| ||| Sbjct 1756244 TTTTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACC 1756185 Query 57063 ACTATACTACCGAGGAT 57079 ||||||||| ||||||| Sbjct 1756184 ACTATACTATCGAGGAT 1756168 Score = 91.5 bits (100), Expect = 2e-13 Identities = 73/86 (85%), Gaps = 4/86 (5%) Strand=Plus/Plus Query 56998 AAAAAT-TTTCTCCTCGGCAA---GAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGAC 57053 |||||| ||||||||| | | | |||||||||| ||||||||||||||||||||| Sbjct 1755942 AAAAATATTTCTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGG 1756001 Query 57054 ATACTCACCACTATACTACCGAGGAT 57079 ||||| |||||||||||| ||||||| Sbjct 1756002 ATACTGACCACTATACTATCGAGGAT 1756027 Score = 87.8 bits (96), Expect = 2e-12 Identities = 67/78 (86%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 1756707 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 1756648 Query 57067 TACTACCGAGGA-TTGAA 57083 ||||| |||||| ||||| Sbjct 1756647 TACTATCGAGGACTTGAA 1756630 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 2541010 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 2541069 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 2541070 TACTATCGAGGA 2541081 >seq7578 Length=2134778 Score = 89.7 bits (98), Expect = 6e-13 Identities = 72/86 (84%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 773332 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 773273 Query 57066 ATACTACCGAGGA--TTGAATATATA 57089 |||||| |||||| |||| ||| || Sbjct 773272 ATACTATCGAGGAAGTTGATTATTTA 773247 Score = 89.7 bits (98), Expect = 6e-13 Identities = 76/93 (82%), Gaps = 2/93 (2%) Strand=Plus/Minus Query 56993 TTATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGA 57052 |||| ||| | | |||| || | | |||||||||| ||||||||||||||||||||| Sbjct 774280 TTATAAAATCTCTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGG 774221 Query 57053 CATACTCACCACTATACTACCGAGGA--TTGAA 57083 ||||| |||||||||||| |||||| ||||| Sbjct 774220 GATACTGACCACTATACTATCGAGGACGTTGAA 774188 Score = 86.0 bits (94), Expect = 7e-12 Identities = 66/77 (86%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 770905 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 770846 Query 57067 TACTACCGAGG-ATTGA 57082 ||||| ||||| ||||| Sbjct 770845 TACTATCGAGGAATTGA 770829 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 775175 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 775116 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 775115 TACTATCGAGGA 775104 Score = 84.2 bits (92), Expect = 2e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 57078 |||||||||| ||||||||||||||||||||| ||||| |||||||||||| |||||| Sbjct 771759 AATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTATACTATCGAGGA 771701 >seq8650 Length=272343 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 178173 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 178232 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 178233 ATACTATCGAGGA 178245 >seq7566 Length=960142 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 49864 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 49923 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 49924 ATACTATCGAGGA 49936 >seq7527 Length=9476429 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 8622983 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 8622924 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 8622923 ATACTATCGAGGA 8622911 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 5873629 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 5873688 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 5873689 TACTATCGAGGA 5873700 >seq7523 Length=5043705 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 57003 TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 57062 ||| |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||| Sbjct 4785724 TTTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACC 4785783 Query 57063 ACTATACTACCGAGGA 57078 ||||||||| |||||| Sbjct 4785784 ACTATACTATCGAGGA 4785799 >seq7562 Length=1026670 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063 || |||| || | | |||||||||| ||||||||||||||||||||| ||||| |||| Sbjct 899660 TTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCA 899601 Query 57064 CTATACTACCGAGGA 57078 |||||||| |||||| Sbjct 899600 CTATACTATCGAGGA 899586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543141360726640