Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21]
10,521 sequences; 224,417,174 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq7517 120 3e-22
seq9468 100 3e-16
seq7535 95.1 1e-14
seq7578 89.7 6e-13
seq8650 87.8 2e-12
seq7566 87.8 2e-12
seq7527 87.8 2e-12
seq7523 87.8 2e-12
seq7562 86.0 7e-12
>seq7517
Length=11427604
Score = 120 bits (132), Expect = 3e-22
Identities = 152/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059
||||| ||||| || |||||| || || ||||| || | |||||| || |||| ||
Sbjct 2898492 ACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGTCCGTCTTCC 2898433
Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119
||||||||||| ||||| || | |||||||| || | || | || |||||||||| |
Sbjct 2898432 AGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGG 2898373
Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 42179
|| || || | || | | |||||| || || || || | ||||||||| |||
Sbjct 2898372 ATCTTGGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTCTTG 2898313
Query 42180 CCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|| || |||||||| || ||||| |||||
Sbjct 2898312 CCAGTCAGCGTCTTCACGAAGATCTGCAT 2898284
Score = 111 bits (122), Expect = 2e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059
||||| ||||| || |||||| || || ||||| || | || || || |||| ||
Sbjct 2898720 ACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCCGTCTTCC 2898661
Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119
||||||||||| ||||| || | |||||||| || | || | || |||||||||| |
Sbjct 2898660 AGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGG 2898601
Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 42179
|| || || | || | | |||||| || || || || | ||||||||| |||
Sbjct 2898600 ATCTTGGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTCTTG 2898541
Query 42180 CCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|| || |||||||| || ||||| |||||
Sbjct 2898540 CCAGTCAGCGTCTTCACGAAGATCTGCAT 2898512
Score = 104 bits (114), Expect = 3e-17
Identities = 138/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| || || ||||| || | || || || |||| || ||||||||||| |||||
Sbjct 2898931 CTCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCCGTCTTCCAGCTGCTTACCGGCGAA 2898872
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136
|| | |||||||| || | || | || |||||||||| ||| || || | |
Sbjct 2898871 GATCAAACGCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTT 2898812
Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196
| | | |||||| || || || || | ||||||||| ||||| || |||||||| ||
Sbjct 2898811 CTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTCTTGCCAGTCAGCGTCTTCAC 2898752
Query 42197 AAAGATTTGCAT 42208
||||| |||||
Sbjct 2898751 GAAGATCTGCAT 2898740
>seq9468
Length=22518
Score = 100 bits (110), Expect = 3e-16
Identities = 87/107 (81%), Gaps = 6/107 (6%)
Strand=Plus/Minus
Query 56978 ACAACAAATTA-ACGTTTATGAAA-----AATTTTCTCCTCGGCAAGAAATCGAACCCTG 57031
|||||||||| | ||||| ||| |||||||||| || | | |||||||||| |
Sbjct 12810 ACAACAAATTCTATATTTATAAAATAAACAATTTTCTCCCCGACGGGGAATCGAACCCCG 12751
Query 57032 GTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 57078
|||||||||||||||||||| ||||| |||||||||||| ||||||
Sbjct 12750 GTCTCCCGCGTGACAGGCGGGGATACTGACCACTATACTATCGAGGA 12704
Score = 95.1 bits (104), Expect = 1e-14
Identities = 69/80 (86%), Gaps = 0/80 (0%)
Strand=Plus/Minus
Query 57000 AAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTC 57059
|||| |||||| || | | |||||||||| ||||||||||||||||||||| |||||
Sbjct 11058 AAATATTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTG 10999
Query 57060 ACCACTATACTACCGAGGAT 57079
|||||||||||| |||||||
Sbjct 10998 ACCACTATACTATCGAGGAT 10979
Score = 89.7 bits (98), Expect = 6e-13
Identities = 70/83 (84%), Gaps = 3/83 (4%)
Strand=Plus/Minus
Query 57000 AAATTTTCTCCTCGGCAA---GAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056
||| ||||||||| | | | |||||||||| ||||||||||||||||||||| |||
Sbjct 14075 AAAATTTCTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 14016
Query 57057 CTCACCACTATACTACCGAGGAT 57079
|| |||||||||||| |||||||
Sbjct 14015 CTGACCACTATACTATCGAGGAT 13993
>seq7535
Length=3646130
Score = 95.1 bits (104), Expect = 1e-14
Identities = 67/77 (87%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 57003 TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 57062
|||||||| || | | |||||||||| ||||||||||||||||||||| ||||| |||
Sbjct 1756244 TTTTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACC 1756185
Query 57063 ACTATACTACCGAGGAT 57079
||||||||| |||||||
Sbjct 1756184 ACTATACTATCGAGGAT 1756168
Score = 91.5 bits (100), Expect = 2e-13
Identities = 73/86 (85%), Gaps = 4/86 (5%)
Strand=Plus/Plus
Query 56998 AAAAAT-TTTCTCCTCGGCAA---GAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGAC 57053
|||||| ||||||||| | | | |||||||||| |||||||||||||||||||||
Sbjct 1755942 AAAAATATTTCTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGG 1756001
Query 57054 ATACTCACCACTATACTACCGAGGAT 57079
||||| |||||||||||| |||||||
Sbjct 1756002 ATACTGACCACTATACTATCGAGGAT 1756027
Score = 87.8 bits (96), Expect = 2e-12
Identities = 67/78 (86%), Gaps = 1/78 (1%)
Strand=Plus/Minus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | |||||||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 1756707 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 1756648
Query 57067 TACTACCGAGGA-TTGAA 57083
||||| |||||| |||||
Sbjct 1756647 TACTATCGAGGACTTGAA 1756630
Score = 86.0 bits (94), Expect = 7e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | |||||||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 2541010 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 2541069
Query 57067 TACTACCGAGGA 57078
||||| ||||||
Sbjct 2541070 TACTATCGAGGA 2541081
>seq7578
Length=2134778
Score = 89.7 bits (98), Expect = 6e-13
Identities = 72/86 (84%), Gaps = 2/86 (2%)
Strand=Plus/Minus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 773332 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 773273
Query 57066 ATACTACCGAGGA--TTGAATATATA 57089
|||||| |||||| |||| ||| ||
Sbjct 773272 ATACTATCGAGGAAGTTGATTATTTA 773247
Score = 89.7 bits (98), Expect = 6e-13
Identities = 76/93 (82%), Gaps = 2/93 (2%)
Strand=Plus/Minus
Query 56993 TTATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGA 57052
|||| ||| | | |||| || | | |||||||||| |||||||||||||||||||||
Sbjct 774280 TTATAAAATCTCTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGG 774221
Query 57053 CATACTCACCACTATACTACCGAGGA--TTGAA 57083
||||| |||||||||||| |||||| |||||
Sbjct 774220 GATACTGACCACTATACTATCGAGGACGTTGAA 774188
Score = 86.0 bits (94), Expect = 7e-12
Identities = 66/77 (86%), Gaps = 1/77 (1%)
Strand=Plus/Minus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | |||||||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 770905 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 770846
Query 57067 TACTACCGAGG-ATTGA 57082
||||| ||||| |||||
Sbjct 770845 TACTATCGAGGAATTGA 770829
Score = 86.0 bits (94), Expect = 7e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | |||||||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 775175 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 775116
Query 57067 TACTACCGAGGA 57078
||||| ||||||
Sbjct 775115 TACTATCGAGGA 775104
Score = 84.2 bits (92), Expect = 2e-11
Identities = 54/59 (92%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 57078
|||||||||| ||||||||||||||||||||| ||||| |||||||||||| ||||||
Sbjct 771759 AATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTATACTATCGAGGA 771701
>seq8650
Length=272343
Score = 87.8 bits (96), Expect = 2e-12
Identities = 63/73 (86%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 178173 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 178232
Query 57066 ATACTACCGAGGA 57078
|||||| ||||||
Sbjct 178233 ATACTATCGAGGA 178245
>seq7566
Length=960142
Score = 87.8 bits (96), Expect = 2e-12
Identities = 63/73 (86%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 49864 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 49923
Query 57066 ATACTACCGAGGA 57078
|||||| ||||||
Sbjct 49924 ATACTATCGAGGA 49936
>seq7527
Length=9476429
Score = 87.8 bits (96), Expect = 2e-12
Identities = 63/73 (86%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 8622983 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 8622924
Query 57066 ATACTACCGAGGA 57078
|||||| ||||||
Sbjct 8622923 ATACTATCGAGGA 8622911
Score = 86.0 bits (94), Expect = 7e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | |||||||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 5873629 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 5873688
Query 57067 TACTACCGAGGA 57078
||||| ||||||
Sbjct 5873689 TACTATCGAGGA 5873700
>seq7523
Length=5043705
Score = 87.8 bits (96), Expect = 2e-12
Identities = 65/76 (86%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 57003 TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 57062
||| |||| || | | |||||||||| ||||||||||||||||||||| ||||| |||
Sbjct 4785724 TTTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACC 4785783
Query 57063 ACTATACTACCGAGGA 57078
||||||||| ||||||
Sbjct 4785784 ACTATACTATCGAGGA 4785799
>seq7562
Length=1026670
Score = 86.0 bits (94), Expect = 7e-12
Identities = 64/75 (85%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063
|| |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||
Sbjct 899660 TTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCA 899601
Query 57064 CTATACTACCGAGGA 57078
|||||||| ||||||
Sbjct 899600 CTATACTATCGAGGA 899586
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543141360726640
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