Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21] 10,521 sequences; 224,417,174 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq7552 114 1e-20 seq7521 114 1e-20 >seq7552 Length=2500597 Score = 114 bits (126), Expect = 1e-20 Identities = 284/431 (66%), Gaps = 0/431 (0%) Strand=Plus/Plus Query 154071 GTGAACGGCTCGAACGATTCGTTGTTGCCTAATATTTGAGCTGTAGTTGCTGTGGGCATA 154130 ||| |||||||||||||||| |||||||| | ||||| || || | || || ||||| Sbjct 1135289 GTGTACGGCTCGAACGATTCATTGTTGCCGAGAATTTGTGCCGTGGAAGCCGTCGGCATC 1135348 Query 154131 TACGCCACCAACAAAGAGTTTCGCAAACCGTGTTTTGCAATGCGCAATTTTAAATCTGCC 154190 |||| || || || || || | ||||| || || || || || || ||| Sbjct 1135349 GGGGCCAACAGCAGCGAATTGCGAATGCCGTGCTTGGCGATCTTTTCCTTCAACTCGGCC 1135408 Query 154191 CAATTCCACAAGTTGGTAGGTTGCACGTTCCACATGTCGTATTGCAAAACACCCAAACTC 154250 || ||||||| | || |||| | ||||||||| ||||| ||||| | ||| ||| Sbjct 1135409 CAGTTCCACAGATCCGTCGGTTCCTTGTTCCACATCTCGTACTGCAAGATGCCCTTGCTC 1135468 Query 154251 GCCGGACTGTCACTATAACTAGAGTACGGCCCGTTCAGTTTTGCCAAGTCGCAACTGGCT 154310 |||||||| | || | |||||| || | | ||||| || || || ||| Sbjct 1135469 ACCGGACTGCCCTCGTACGTCTCGTACGGACCATCTCGAGCGGCCAACTCACAGCTCGCT 1135528 Query 154311 TCTAACGCCGCATAGTATACGGTTTCGGCAATTTGTTTGTTTAACATTTTGGCTTTGTCA 154370 || | ||| | ||||| | ||||||| ||||| | |||| | ||| || | || Sbjct 1135529 TCCAGCGCGCCGTAGTAGATGGTTTCGAATATTTGCTGATTTAGCTTTTGAGCCTCTTCG 1135588 Query 154371 CTTTCGTACGGCAATCCCAATATACAAAAAGCATCGGCGAGCCCTTGAATGCCCACTCCA 154430 ||||||||||| | | || | || |||||||| | || || | ||| | || Sbjct 1135589 CTTTCGTACGGATAGCGCATCAGGATGAACGCATCGGCCATGCCCTGCACGCCGATCCCG 1135648 Query 154431 ACGGGTCTGTGTTTTAAATTCGATTCTTTGGCAGCCTCCAGAGGATAATAATTGATATCG 154490 | || ||||| | ||| || || || || || ||||| ||||||| ||| Sbjct 1135649 ATCGGCCTGTGGCGCATATTGGAGCGCTTAGCCTCCGGCACGGGATAGTAATTGACATCA 1135708 Query 154491 ATAATTTTATT 154501 || ||||| || Sbjct 1135709 ATGATTTTGTT 1135719 Score = 96.9 bits (106), Expect = 3e-15 Identities = 573/904 (63%), Gaps = 29/904 (3%) Strand=Plus/Plus Query 154632 ACAATTTCTGCGCACAAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTG 154691 |||||||| | |||||| || ||| |||||||| | || | ||| || ||| Sbjct 1135853 ACAATTTCAGTGCACAAGTTGGAACATTTGATGGTGCCGATATTCTGCTGGTTACTTTTA 1135912 Query 154692 ATGTTGCATGCGTCTTTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGGTTTCAATA 154751 ||||| || || ||||||| |||||||| ||| |||||||| || | ||| || Sbjct 1135913 CGATTGCAAGCATCCTTGTACAGCATGTACGGTACGCCGGTTTCCACCTGCGATTCGATG 1135972 Query 154752 ATTGTGCGAAACAGACTTC--GCGCCTCAACTTGACAAGTAAATCGATTTTCGCTCTCAT 154809 || | | || || | || |||||| || || | |||| ||| || |||| | Sbjct 1135973 ATCG--CAAACCACAGATCCTGCGCCTTCACCTGCCGCATAAAGCGACCCTCTTTCTCGT 1136030 Query 154810 ATTGTTCGTACAGTTTTTCAAACTCTAAACTGTACACGTCCGACAAACCGGGACAGCGGT 154869 | |||||| || || |||||| | | |||||| | |||||||| || Sbjct 1136031 ACCCCGTGTACAGCTTCTCGAACTCTTCGCCCCAGGTGTCCGATAGCCCGGGACAATCGT 1136090 Query 154870 CGGGACACATCAATGACCACATTTCGTTTTGTTGTACGCGTTTCATAAACAAATCCGGCA 154929 || ||||||| |||||||||||| | || || | ||| |||| ||||| | Sbjct 1136091 GCGGGCACATCAGACTCCACATTTCGTTCGCCTCCACACGCTGCATGAACAGGTCCGGTA 1136150 Query 154930 CCCACAAAGCGTACAACAAATCACGCGCCTTTTTGTCTTCAGCGCCCATGTTTCGCTTTA 154989 ||| | ||||| |||| || || || || || ||| ||||| ||| | Sbjct 1136151 TCCAGAGTGCGTAAAACATGTCCCGTGCGCGGACCTCCTCCTTGCCGGTGTTTTTCTTCA 1136210 Query 154990 AATTCAAAAAATCATATATGTCGGCGTGCCACGGCTCTAAATATACGGCCATCGCGCCTT 155049 || | ||| || |||| || | ||||||||||| | ||| | ||| | || || Sbjct 1136211 GATCGAGAAACTCGAATATATCACCATGCCACGGCTCGAGATAGATGGCGAATGCTCCAG 1136270 Query 155050 TGCG---TTTTCCTCCTTGATCCACGTGACGCACACAATTATTGTACACGCGCAACAATG 155106 || || || || ||||| |||| || | ||| ||||| ||||||| || | Sbjct 1136271 GCCGCTTGTTGCCACCCTGATCGACGTACCGTGCCGTATTGTTGTAGACGCGCAGCATCG 1136330 Query 155107 GTTCCACGCCGCTGGCCGTGCCGTTGGTGCC----ACGTATCGCGCTGCCGCGAGCACGC 155162 | ||| ||| | | | ||||| || || | ||| || | || || || Sbjct 1136331 GCACCAGACCGTTCGAAATCCCGTTCGTACCGGAGATGTA-CG---TTCCCTTCGCGCG- 1136385 Query 155163 GCTTTA-TGAACATTAACGCCCAAACCTCCGCCGTATTTAGATATTTGCGCACAGTCCGC 155221 | | | || || || | || | || ||| | | || || ||| | ||||| | | Sbjct 1136386 GATACAGTGCACGTTCAGTCCGATGCCACCGGCCGACTTTGAAATTAGGGCACACTGCTT 1136445 Query 155222 CAAAGTTTCGTACATTCCTTTGATGCTGTCTTCTTTCAACGTCAACAAGAAACACGAAGA 155281 || || ||||| || || | ||||| ||||| || ||||||| ||| || || || Sbjct 1136446 CAGCGTGTCGTAGATGCCCTCAATGCTATCTTCGGACATGGTCAACAGGAAGCAGGACGA 1136505 Query 155282 TAATT---GAGGTTGAGGGCAGCCGGCCGCAAATAATGTAGGACTAGCGTGTGTAAACAT 155338 | | || | |||| | ||| |||||||| | || || ||||| ||||| | Sbjct 1136506 AAGCTGGGGACGCTGAGTG--GCC-GCCGCAAACATAGTTGGCGAGGCGTGGGTAAA-GT 1136561 Query 155339 TTTGTTGGCGGTTA--AG-TTGTAAGTTTCGATGGCGGCGTCAATGTCACGACCGTGTAT 155395 | | ||| | || ||||| || ||||| || || || ||||| || || || Sbjct 1136562 AACGCT--CGGACAGCAGATTGTAGGTCTCGATTGCTGCATCGATGTCCTCGCCATGGAT 1136619 Query 155396 ACCGATCGCCACGCGCATCAGCATGTGTTGAATGCGCTCCGCAACGCGGCCGTTGATGCG 155455 || || || ||||||||||||||||| || |||||| | | || ||||| Sbjct 1136620 GCCAATAGCAACGCGCATCAGCATGTGCTGGGGGCGCTCGACGATTTTTCCCTTGATCTT 1136679 Query 155456 CTTTAAGTACCCATTTTCCAAAGTTTTATACGCAAAATACTTGTATTCGTAGTCTCGTTT 155515 | ||||| |||||| |||||| | | ||||| ||||| || |||| || | Sbjct 1136680 CAGCAAGTATGATCGTTCCAAGGTTTTAAAGCCGAAATAGTTGTACCCGAAGTCGCGATC 1136739 Query 155516 GTAA 155519 |||| Sbjct 1136740 GTAA 1136743 >seq7521 Length=12184106 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||||| | ||||| ||||||| ||||| || || || |||||||| || | Sbjct 8321345 ACCACCGCGCAGGCGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 8321286 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | || || |||||||||||||| | || || |||||||| || || || Sbjct 8321285 CAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGG 8321226 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 |||||||| || || || || || ||| ||| ||| | ||||| || || || Sbjct 8321225 GATTCCTTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGAC 8321166 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | || | |||||| || || | ||||| ||||| || ||||| || Sbjct 8321165 CTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCTT 8321115 Score = 105 bits (116), Expect = 7e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 64256 TTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATG 64315 || ||||||||||| || | || ||||| | || || |||||||||||||| | || Sbjct 9381158 TTCTGAATGTTGTAGTCGGAGAGAGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATC 9381217 Query 64316 AGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCC 64375 || |||||||| || || ||||| ||||| || || || || ||| ||| ||| ||| Sbjct 9381218 AGACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCG 9381277 Query 64376 ACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAA 64435 | || || | || || || | || | |||||||||||| | ||||| |||||| Sbjct 9381278 ATCGTGTCCGAAGGCTCGACCTCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAA 9381337 Query 64436 ATTTGCATTTT 64446 || ||||| || Sbjct 9381338 ATCTGCATGTT 9381348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499579090463240