Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21] 10,521 sequences; 224,417,174 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq7552 185 8e-42 seq7535 122 8e-23 seq7521 122 8e-23 seq7517 118 1e-21 >seq7552 Length=2500597 Score = 185 bits (204), Expect = 8e-42 Identities = 934/1455 (64%), Gaps = 59/1455 (4%) Strand=Plus/Plus Query 146056 AGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTG 146115 |||| ||||| |||||||| |||||||| | || |||||||| || ||||| Sbjct 1135229 AGATGATGGTTCACCACCTGGAACTCGCCCGACAGCACGCGCCTATTGTAAACGTTCGAC 1135288 Query 146116 GTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATG 146175 ||| ||||||||||||| || ||||| ||||| || || ||||| | ||| || ||||| Sbjct 1135289 GTGTACGGCTCGAACGATTCATTGTTGCCGAGAATTTGTGCCGTGGAAGCCGTCGGCATC 1135348 Query 146176 TACGCCACCAGCAAAGAGTTTCTCACGCCGTGTCTTTG-AATCTTTTCCCGTAGTTTGGA 146234 |||| ||||| || || | | |||||| ||| | ||||||||| | | || Sbjct 1135349 GGGGCCAACAGCAGCGAATTGCGAATGCCGTG-CTTGGCGATCTTTTCCTTCAACTCGGC 1135407 Query 146235 CCAATTCCACAAATGATCCGTGGGATAGATATTGTAGTTGTCGTAATGCATAGTGCCGCG 146294 ||| ||||||| ||||||| || | | || | | ||||| |||| |||| Sbjct 1135408 CCAGTTCCACA---GATCCGTCGGTTCCTTGTTCCACATCTCGTACTGCAAGATGCCCTT 1135464 Query 146295 GAACAGGGGGCTATTCTCGTACGATTCATAAGGACC--GTCGATCTTGGCCAGTTCGCAG 146352 | || || || |||||||| || || ||||| |||| | ||||| || ||| Sbjct 1135465 GCTCACCGGACTGCCCTCGTACGTCTCGTACGGACCATCTCGAGC--GGCCAACTCACAG 1135522 Query 146353 CTAGCTTCCAGAGCCGAAAAGTATATGGTCTCCGCGATCATGTAGTTGA---CGCTCCTG 146409 || |||||||| || |||| ||||| | ||| || | | ||| ||| || Sbjct 1135523 CTCGCTTCCAGCGCGCCGTAGTAGATGGTTT---CGAATAT-TTGCTGATTTAGCTTTTG 1135578 Query 146410 -GCCTCCTCGCTGTCGTAGGGGATATCG-AGAAGCACAAAGGCGTCGGCGAGACCCTGTA 146467 ||||| ||||| ||||| ||||| || | || | || || ||||| | ||||| | Sbjct 1135579 AGCCTCTTCGCTTTCGTA-CGGATAGCGCATCAGGATGAACGCATCGGCCATGCCCTGCA 1135637 Query 146468 TCCCGACACCAACGGGGCGGTGTTTCTTGTTACTGTTCGCAGCGCCCGCAGTGGGATAGT 146527 |||| || | || | ||| | | || | | ||| ||| |||||||| Sbjct 1135638 CGCCGATCCCGATCGGCCTGTGGCGCATATTGGAGCGCTTAGCCTCCGGCACGGGATAGT 1135697 Query 146528 GGTTGCTGTCGATGATCTTGTTGAGATTACGCACGACAATTTTCGTCAAACGATTCAGCA 146587 ||| || ||||| ||||| ||||| ||| || | || | | |||||| Sbjct 1135698 AATTGACATCAATGATTTTGTTCAGATTGCGCGTTACGGTCTTAGCGACTTCCTTCAGCT 1135757 Query 146588 GGACATAGTCAAATGTTTTAGTTTTAACGTTGACGCACTTGTTGACGGCGATAGAGGCCA 146647 || ||||| | ||||| || || || || || |||| | |||||| ||||||| Sbjct 1135758 TTGCAAAGTCATACGTTTT-GTCTT--GCTTTACAAACATGTTCAAGGCGATCGAGGCCA 1135814 Query 146648 AGTTACATACGGCAGTCTCGTCCTT-GTCGCAATACTGCACAATCTCGGCGCAGAGGTTG 146706 || ||||| || ||| ||||| | || | |||| ||||| || | ||| | |||| Sbjct 1135815 GATTGCATACCGCTACCTCATCCTTCGACG-AGTACTCTACAATTTCAGTGCACAAGTTG 1135873 Query 146707 CTGCACTTGATGATGCCCAAAtttttttGGTTACTAAACTTGTTGCAGGGGTCCTTGTAG 146766 || |||||| |||| | ||| | |||||||| ||||| | |||||||| Sbjct 1135874 GAACATTTGATGGTGCCGATATTCTGCTGGTTACTTTTACGATTGCAAGCATCCTTGTAC 1135933 Query 146767 AGCATGTACGGTCCCCCGGTTTCGACATTGGTCTCGACGAT--GAATCTAAACAAATCTC 146824 |||||||||||| | |||||||| || | | |||| ||| || | ||| ||| | Sbjct 1135934 AGCATGTACGGTACGCCGGTTTCCACCTGCGATTCGATGATCGCAAAC--CACAGATC-C 1135990 Query 146825 TG-GCCTTTACTTGTCTTTCGTACAG-TTTATTCTTT-TCGTATTTCTCGTACAATATTT 146881 || ||||| || || | | || || ||||| ||||| | ||||| | | Sbjct 1135991 TGCGCCTTCACCTGCC--GCATAAAGCGACCCTCTTTCTCGTACCCCGTGTACAGCTTCT 1136048 Query 146882 CAAAACTAGAACCGTACTCGTCGAGGAGGCCGGGATACTTTTTGGGACAGAACAGCGACC 146941 | || || | ||| || |||||| | | | || || | ||| || Sbjct 1136049 CGAACTCTTCGCCCCAGGTGTCCGATAGCCCGGGACAATCGTGCGGGCACATCAGACTCC 1136108 Query 146942 ATTCTTTATTCTCCTTCACGCGTTCCATAAACAAATCGGGAATCCAAAGGCCCAGCATCA 147001 | || ||| ||| ||| || | ||| |||| || || ||||| || | | || Sbjct 1136109 ACATTTCGTTCGCCTCCACACGCTGCATGAACAGGTCCGGTATCCAGAGTGCGTAAAACA 1136168 Query 147002 AGTCGCGAGCCTTGGCGTCCTCGGAGCCCATGTTGCGTCTCAAGTTGAGGACATCGTAAA 147061 ||| || || | | ||||| ||| |||| ||| | ||| | ||| | | Sbjct 1136169 TGTCCCGTGCGCGGACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCGAGAAACTCGAATA 1136228 Query 147062 TTTCCGGATGCCAAGGCTCCACGTATGCGGCGAGTGCGCCTTTTCGC---TTACCGCCCT 147118 | || |||||| ||||| | || ||||| ||| || ||| || || |||| Sbjct 1136229 TATCACCATGCCACGGCTCGAGATAGATGGCGAATGCTCCAGGCCGCTTGTTGCCACCCT 1136288 Query 147119 GATCGACGTGGCGCACCATGTTATTGAAGACTCGTAACATGGACACGAGGCCGCCGGA-- 147176 ||||||||| || || | || ||| |||| || | ||| | ||| || ||| || Sbjct 1136289 GATCGACGTACCGTGCCGTATTGTTGTAGACGCGCAGCATCGGCACCAGACCGTTCGAAA 1136348 Query 147177 ----TTTTGTGGTGCCGTTGTA------TTGAGCGCTGACGCTTTGCACGCTCAGCCCGA 147226 || || | | |||| | |||| || | |||||| |||| |||| Sbjct 1136349 TCCCGTTCGTACCGGAGATGTACGTTCCCTTCGCGCGGATACAGTGCACGTTCAGTCCGA 1136408 Query 147227 GACCTCCGCCCAGATTCGAAATCAAAGCGGACTCGTGCAAGGTCTTGTAGATGCCGTCGA 147286 || ||| || || ||||| | || ||| | || || | ||||||||| || | Sbjct 1136409 TGCCACCGGCCGACTTTGAAATTAGGGCACACTGCTTCAGCGTGTCGTAGATGCCCTCAA 1136468 Query 147287 TGCTGTCTTCCTTGATGCATTGCAGGAAACACGAACACATTTGGGGACGACACGTGCCCG 147346 |||| ||||| ||| |||||| || || | | |||||||| ||| ||| Sbjct 1136469 TGCTATCTTCGGACATGGTCAACAGGAAGCAGGACGAAAGCTGGGGACGCTGAGTGGCCG 1136528 Query 147347 CCGCAAACAGCGTGGGGCTGGCGTGCGTGAACGT---GCCCAGACTCATCA-ATTGATAC 147402 ||||||||| || || |||||| || || || || | || || || |||| || Sbjct 1136529 CCGCAAACATAGTTGGCGAGGCGTGGGT-AAAGTAACGCTCGGA--CAGCAGATTG-TAG 1136584 Query 147403 GTTTCAATGGCGCTCAT-AACGTCATCGCCGTGAATGGCCAGGGCGACGCGCATGAGCAT 147461 || || || || ||| | ||| ||||| || ||| | | || |||||||| ||||| Sbjct 1136585 GTCTCGATTGC-TGCATCGATGTCCTCGCCATGGATGCCAATAGCAACGCGCATCAGCAT 1136643 Query 147462 GTGCTGGGGTCGTTC 147476 ||||||||| || || Sbjct 1136644 GTGCTGGGGGCGCTC 1136658 >seq7535 Length=3646130 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||| ||| | |||||||| || || || || || || | Sbjct 875808 CCACCACGCAGACGAAGAACCAGATGAAGAGTAGACTCCTTCTGGATGTTATAGTCCGAC 875867 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| ||||| ||| |||||| ||||||||||| || || Sbjct 875868 AGGGTGCGGCCATCCTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGGCGGG 875927 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| ||| ||| ||| | | || | || |||| ||| ||| Sbjct 875928 ATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGTATCCGATGGCTCAACT 875987 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || || |||||||||||||| || ||||||||||| Sbjct 875988 TCCAGGGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCAT 876034 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||| ||| | || ||||| || || || || || || | Sbjct 876036 CCACCACGCAGACGGAGAACCAGATGAAGGGTGGACTCCTTCTGGATGTTATAGTCCGAC 876095 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| ||||||||| |||||| ||||||||||| || || Sbjct 876096 AGGGTGCGGCCATCCTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGCGGG 876155 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| ||| ||| ||| | | || | || |||| ||| || Sbjct 876156 ATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGTATCCGATGGCTCAACC 876215 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| ||| | || || |||||||||||||| || ||||||||||| Sbjct 876216 TCGAGGGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCAT 876262 >seq7521 Length=12184106 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || |||||||| | |||| ||||| ||| | || ||||| || || || ||||| ||| Sbjct 8321347 GCACCACCGCGCAGGCGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCG 8321288 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || |||||| ||| || ||||| || || ||| |||||| ||||||||||| || Sbjct 8321287 GACAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGC 8321228 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || || ||||||||| ||| ||| ||| | | |||| || |||| |||| Sbjct 8321227 GGGATTCCTTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCG 8321168 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || | ||| | || || || || || ||||| || || |||||||| Sbjct 8321167 ACCTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 8321118 Score = 116 bits (128), Expect = 4e-21 Identities = 139/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || ||||| ||||| ||| | |||||| ||| || ||||| || || ||| ||||| Sbjct 9381158 TTCTGAATGTTGTAGTCGGAGAGAGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATC 9381217 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 | ||||||||||| || || ||||| ||||||||| ||| || ||| | | ||| Sbjct 9381218 AGACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCG 9381277 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | ||||||| | |||||| || | || | || |||||||| || ||||| || ||| Sbjct 9381278 ATCGTGTCCGAAGGCTCGACCTCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAA 9381337 Query 127106 ATCTGCATG 127114 ||||||||| Sbjct 9381338 ATCTGCATG 9381346 >seq7517 Length=11427604 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | ||||| || | || ||||| || || || ||||| ||| | Sbjct 2898738 CCACCGCGCAGACGGAGGACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 2898679 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || ||||| || || ||| ||||||| ||||||||||| ||||| Sbjct 2898678 AAGGTACGTCCGTCTTCCAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCTGGAGGA 2898619 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| || ||| | | |||| ||||||| |||||| Sbjct 2898618 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGACC 2898559 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | || ||||| ||||| || || || || ||||||||| Sbjct 2898558 TCCAGCGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCATG 2898511 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | ||||| || | || ||||| || || || ||||| ||| | Sbjct 2898510 CCACCGCGCAGACGGAGGACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 2898451 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || ||||| || || ||| ||||||| ||||||||||| ||||| Sbjct 2898450 AGAGTACGTCCGTCTTCCAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCTGGAGGA 2898391 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| || ||| | | |||| ||||||| |||||| Sbjct 2898390 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGACC 2898331 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || ||||| ||||| || || || || |||||||| Sbjct 2898330 TCCAGCGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 2898284 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| ||| || || || || || ||||| || || Sbjct 2898936 GTCGACTCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCCGTCTTCCAGCTGCTTACCG 2898877 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| ||||||| ||||||||||| ||||| ||||||||||||||| ||| || ||| Sbjct 2898876 GCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTC 2898817 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| ||||||| |||||| || | || | || ||||| ||||| || Sbjct 2898816 ACGTTCTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTCTTGCCAGTCAGCGTC 2898757 Query 127097 TTTACAAAAATCTGCATG 127114 || || || ||||||||| Sbjct 2898756 TTCACGAAGATCTGCATG 2898739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475438265701040