Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21]
10,521 sequences; 224,417,174 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq7552 185 8e-42
seq7535 122 8e-23
seq7521 122 8e-23
seq7517 118 1e-21
>seq7552
Length=2500597
Score = 185 bits (204), Expect = 8e-42
Identities = 934/1455 (64%), Gaps = 59/1455 (4%)
Strand=Plus/Plus
Query 146056 AGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTG 146115
|||| ||||| |||||||| |||||||| | || |||||||| || |||||
Sbjct 1135229 AGATGATGGTTCACCACCTGGAACTCGCCCGACAGCACGCGCCTATTGTAAACGTTCGAC 1135288
Query 146116 GTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATG 146175
||| ||||||||||||| || ||||| ||||| || || ||||| | ||| || |||||
Sbjct 1135289 GTGTACGGCTCGAACGATTCATTGTTGCCGAGAATTTGTGCCGTGGAAGCCGTCGGCATC 1135348
Query 146176 TACGCCACCAGCAAAGAGTTTCTCACGCCGTGTCTTTG-AATCTTTTCCCGTAGTTTGGA 146234
|||| ||||| || || | | |||||| ||| | ||||||||| | | ||
Sbjct 1135349 GGGGCCAACAGCAGCGAATTGCGAATGCCGTG-CTTGGCGATCTTTTCCTTCAACTCGGC 1135407
Query 146235 CCAATTCCACAAATGATCCGTGGGATAGATATTGTAGTTGTCGTAATGCATAGTGCCGCG 146294
||| ||||||| ||||||| || | | || | | ||||| |||| ||||
Sbjct 1135408 CCAGTTCCACA---GATCCGTCGGTTCCTTGTTCCACATCTCGTACTGCAAGATGCCCTT 1135464
Query 146295 GAACAGGGGGCTATTCTCGTACGATTCATAAGGACC--GTCGATCTTGGCCAGTTCGCAG 146352
| || || || |||||||| || || ||||| |||| | ||||| || |||
Sbjct 1135465 GCTCACCGGACTGCCCTCGTACGTCTCGTACGGACCATCTCGAGC--GGCCAACTCACAG 1135522
Query 146353 CTAGCTTCCAGAGCCGAAAAGTATATGGTCTCCGCGATCATGTAGTTGA---CGCTCCTG 146409
|| |||||||| || |||| ||||| | ||| || | | ||| ||| ||
Sbjct 1135523 CTCGCTTCCAGCGCGCCGTAGTAGATGGTTT---CGAATAT-TTGCTGATTTAGCTTTTG 1135578
Query 146410 -GCCTCCTCGCTGTCGTAGGGGATATCG-AGAAGCACAAAGGCGTCGGCGAGACCCTGTA 146467
||||| ||||| ||||| ||||| || | || | || || ||||| | ||||| |
Sbjct 1135579 AGCCTCTTCGCTTTCGTA-CGGATAGCGCATCAGGATGAACGCATCGGCCATGCCCTGCA 1135637
Query 146468 TCCCGACACCAACGGGGCGGTGTTTCTTGTTACTGTTCGCAGCGCCCGCAGTGGGATAGT 146527
|||| || | || | ||| | | || | | ||| ||| ||||||||
Sbjct 1135638 CGCCGATCCCGATCGGCCTGTGGCGCATATTGGAGCGCTTAGCCTCCGGCACGGGATAGT 1135697
Query 146528 GGTTGCTGTCGATGATCTTGTTGAGATTACGCACGACAATTTTCGTCAAACGATTCAGCA 146587
||| || ||||| ||||| ||||| ||| || | || | | ||||||
Sbjct 1135698 AATTGACATCAATGATTTTGTTCAGATTGCGCGTTACGGTCTTAGCGACTTCCTTCAGCT 1135757
Query 146588 GGACATAGTCAAATGTTTTAGTTTTAACGTTGACGCACTTGTTGACGGCGATAGAGGCCA 146647
|| ||||| | ||||| || || || || || |||| | |||||| |||||||
Sbjct 1135758 TTGCAAAGTCATACGTTTT-GTCTT--GCTTTACAAACATGTTCAAGGCGATCGAGGCCA 1135814
Query 146648 AGTTACATACGGCAGTCTCGTCCTT-GTCGCAATACTGCACAATCTCGGCGCAGAGGTTG 146706
|| ||||| || ||| ||||| | || | |||| ||||| || | ||| | ||||
Sbjct 1135815 GATTGCATACCGCTACCTCATCCTTCGACG-AGTACTCTACAATTTCAGTGCACAAGTTG 1135873
Query 146707 CTGCACTTGATGATGCCCAAAtttttttGGTTACTAAACTTGTTGCAGGGGTCCTTGTAG 146766
|| |||||| |||| | ||| | |||||||| ||||| | ||||||||
Sbjct 1135874 GAACATTTGATGGTGCCGATATTCTGCTGGTTACTTTTACGATTGCAAGCATCCTTGTAC 1135933
Query 146767 AGCATGTACGGTCCCCCGGTTTCGACATTGGTCTCGACGAT--GAATCTAAACAAATCTC 146824
|||||||||||| | |||||||| || | | |||| ||| || | ||| ||| |
Sbjct 1135934 AGCATGTACGGTACGCCGGTTTCCACCTGCGATTCGATGATCGCAAAC--CACAGATC-C 1135990
Query 146825 TG-GCCTTTACTTGTCTTTCGTACAG-TTTATTCTTT-TCGTATTTCTCGTACAATATTT 146881
|| ||||| || || | | || || ||||| ||||| | ||||| | |
Sbjct 1135991 TGCGCCTTCACCTGCC--GCATAAAGCGACCCTCTTTCTCGTACCCCGTGTACAGCTTCT 1136048
Query 146882 CAAAACTAGAACCGTACTCGTCGAGGAGGCCGGGATACTTTTTGGGACAGAACAGCGACC 146941
| || || | ||| || |||||| | | | || || | ||| ||
Sbjct 1136049 CGAACTCTTCGCCCCAGGTGTCCGATAGCCCGGGACAATCGTGCGGGCACATCAGACTCC 1136108
Query 146942 ATTCTTTATTCTCCTTCACGCGTTCCATAAACAAATCGGGAATCCAAAGGCCCAGCATCA 147001
| || ||| ||| ||| || | ||| |||| || || ||||| || | | ||
Sbjct 1136109 ACATTTCGTTCGCCTCCACACGCTGCATGAACAGGTCCGGTATCCAGAGTGCGTAAAACA 1136168
Query 147002 AGTCGCGAGCCTTGGCGTCCTCGGAGCCCATGTTGCGTCTCAAGTTGAGGACATCGTAAA 147061
||| || || | | ||||| ||| |||| ||| | ||| | ||| | |
Sbjct 1136169 TGTCCCGTGCGCGGACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCGAGAAACTCGAATA 1136228
Query 147062 TTTCCGGATGCCAAGGCTCCACGTATGCGGCGAGTGCGCCTTTTCGC---TTACCGCCCT 147118
| || |||||| ||||| | || ||||| ||| || ||| || || ||||
Sbjct 1136229 TATCACCATGCCACGGCTCGAGATAGATGGCGAATGCTCCAGGCCGCTTGTTGCCACCCT 1136288
Query 147119 GATCGACGTGGCGCACCATGTTATTGAAGACTCGTAACATGGACACGAGGCCGCCGGA-- 147176
||||||||| || || | || ||| |||| || | ||| | ||| || ||| ||
Sbjct 1136289 GATCGACGTACCGTGCCGTATTGTTGTAGACGCGCAGCATCGGCACCAGACCGTTCGAAA 1136348
Query 147177 ----TTTTGTGGTGCCGTTGTA------TTGAGCGCTGACGCTTTGCACGCTCAGCCCGA 147226
|| || | | |||| | |||| || | |||||| |||| ||||
Sbjct 1136349 TCCCGTTCGTACCGGAGATGTACGTTCCCTTCGCGCGGATACAGTGCACGTTCAGTCCGA 1136408
Query 147227 GACCTCCGCCCAGATTCGAAATCAAAGCGGACTCGTGCAAGGTCTTGTAGATGCCGTCGA 147286
|| ||| || || ||||| | || ||| | || || | ||||||||| || |
Sbjct 1136409 TGCCACCGGCCGACTTTGAAATTAGGGCACACTGCTTCAGCGTGTCGTAGATGCCCTCAA 1136468
Query 147287 TGCTGTCTTCCTTGATGCATTGCAGGAAACACGAACACATTTGGGGACGACACGTGCCCG 147346
|||| ||||| ||| |||||| || || | | |||||||| ||| |||
Sbjct 1136469 TGCTATCTTCGGACATGGTCAACAGGAAGCAGGACGAAAGCTGGGGACGCTGAGTGGCCG 1136528
Query 147347 CCGCAAACAGCGTGGGGCTGGCGTGCGTGAACGT---GCCCAGACTCATCA-ATTGATAC 147402
||||||||| || || |||||| || || || || | || || || |||| ||
Sbjct 1136529 CCGCAAACATAGTTGGCGAGGCGTGGGT-AAAGTAACGCTCGGA--CAGCAGATTG-TAG 1136584
Query 147403 GTTTCAATGGCGCTCAT-AACGTCATCGCCGTGAATGGCCAGGGCGACGCGCATGAGCAT 147461
|| || || || ||| | ||| ||||| || ||| | | || |||||||| |||||
Sbjct 1136585 GTCTCGATTGC-TGCATCGATGTCCTCGCCATGGATGCCAATAGCAACGCGCATCAGCAT 1136643
Query 147462 GTGCTGGGGTCGTTC 147476
||||||||| || ||
Sbjct 1136644 GTGCTGGGGGCGCTC 1136658
>seq7535
Length=3646130
Score = 122 bits (134), Expect = 8e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || | |||| ||| | |||||||| || || || || || || |
Sbjct 875808 CCACCACGCAGACGAAGAACCAGATGAAGAGTAGACTCCTTCTGGATGTTATAGTCCGAC 875867
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| ||| || ||||| ||||| ||| |||||| ||||||||||| || ||
Sbjct 875868 AGGGTGCGGCCATCCTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGGCGGG 875927
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
|| |||||||||||| ||| ||| ||| | | || | || |||| ||| |||
Sbjct 875928 ATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGTATCCGATGGCTCAACT 875987
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| | ||| | || || |||||||||||||| || |||||||||||
Sbjct 875988 TCCAGGGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCAT 876034
Score = 122 bits (134), Expect = 8e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || | |||| ||| | || ||||| || || || || || || |
Sbjct 876036 CCACCACGCAGACGGAGAACCAGATGAAGGGTGGACTCCTTCTGGATGTTATAGTCCGAC 876095
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| ||| || ||||| ||||||||| |||||| ||||||||||| || ||
Sbjct 876096 AGGGTGCGGCCATCCTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGCGGG 876155
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
|| |||||||||||| ||| ||| ||| | | || | || |||| ||| ||
Sbjct 876156 ATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGTATCCGATGGCTCAACC 876215
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|||| ||| | || || |||||||||||||| || |||||||||||
Sbjct 876216 TCGAGGGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCAT 876262
>seq7521
Length=12184106
Score = 122 bits (134), Expect = 8e-23
Identities = 165/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943
|| |||||||| | |||| ||||| ||| | || ||||| || || || ||||| |||
Sbjct 8321347 GCACCACCGCGCAGGCGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCG 8321288
Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003
|| |||||| ||| || ||||| || || ||| |||||| ||||||||||| ||
Sbjct 8321287 GACAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGC 8321228
Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063
|| || || ||||||||| ||| ||| ||| | | |||| || |||| ||||
Sbjct 8321227 GGGATTCCTTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCG 8321168
Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| || | ||| | || || || || || ||||| || || ||||||||
Sbjct 8321167 ACCTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 8321118
Score = 116 bits (128), Expect = 4e-21
Identities = 139/189 (74%), Gaps = 0/189 (0%)
Strand=Plus/Plus
Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985
|| ||||| ||||| ||| | |||||| ||| || ||||| || || ||| |||||
Sbjct 9381158 TTCTGAATGTTGTAGTCGGAGAGAGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATC 9381217
Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045
| ||||||||||| || || ||||| ||||||||| ||| || ||| | | |||
Sbjct 9381218 AGACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCG 9381277
Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105
| ||||||| | |||||| || | || | || |||||||| || ||||| || |||
Sbjct 9381278 ATCGTGTCCGAAGGCTCGACCTCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAA 9381337
Query 127106 ATCTGCATG 127114
|||||||||
Sbjct 9381338 ATCTGCATG 9381346
>seq7517
Length=11427604
Score = 118 bits (130), Expect = 1e-21
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|||||||| | || | ||||| || | || ||||| || || || ||||| ||| |
Sbjct 2898738 CCACCGCGCAGACGGAGGACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 2898679
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || || || || ||||| || || ||| ||||||| ||||||||||| |||||
Sbjct 2898678 AAGGTACGTCCGTCTTCCAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCTGGAGGA 2898619
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
||||||||||||||| ||| || ||| | | |||| ||||||| ||||||
Sbjct 2898618 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGACC 2898559
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114
|| | || | || ||||| ||||| || || || || |||||||||
Sbjct 2898558 TCCAGCGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCATG 2898511
Score = 116 bits (128), Expect = 4e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|||||||| | || | ||||| || | || ||||| || || || ||||| ||| |
Sbjct 2898510 CCACCGCGCAGACGGAGGACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 2898451
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || || || || ||||| || || ||| ||||||| ||||||||||| |||||
Sbjct 2898450 AGAGTACGTCCGTCTTCCAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCTGGAGGA 2898391
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
||||||||||||||| ||| || ||| | | |||| ||||||| ||||||
Sbjct 2898390 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATCGTGTCCGACGGCTCGACC 2898331
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| | || | || ||||| ||||| || || || || ||||||||
Sbjct 2898330 TCCAGCGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 2898284
Score = 109 bits (120), Expect = 5e-19
Identities = 143/198 (72%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || || || ||||| ||| || || || || || ||||| || ||
Sbjct 2898936 GTCGACTCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCCGTCTTCCAGCTGCTTACCG 2898877
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| ||||||| ||||||||||| ||||| ||||||||||||||| ||| || |||
Sbjct 2898876 GCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTC 2898817
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096
| | |||| ||||||| |||||| || | || | || ||||| ||||| ||
Sbjct 2898816 ACGTTCTCGATCGTGTCCGACGGCTCGACCTCCAGCGTGATGGTCTTGCCAGTCAGCGTC 2898757
Query 127097 TTTACAAAAATCTGCATG 127114
|| || || |||||||||
Sbjct 2898756 TTCACGAAGATCTGCATG 2898739
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475438265701040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |