Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21]
10,521 sequences; 224,417,174 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq7552 248 8e-61
>seq7552
Length=2500597
Score = 248 bits (274), Expect = 8e-61
Identities = 976/1519 (64%), Gaps = 56/1519 (4%)
Strand=Plus/Minus
Query 122841 TACAAATATTTTGGATACAAAACGTTAGAAAACGGATATTTGaaaaaaaTCGAGGAAAAG 122900
||||| ||||| || | ||||| || ||| ||| ||| || ||| ||| |||
Sbjct 1136724 TACAACTATTTCGGCTTTAAAACCTTGGAACGATCATACTTGCTGAAGATCAAGGGAAAA 1136665
Query 122901 GTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGCGAC 122960
||| ||| || || || ||||| |||||||| ||||| ||| | || || |||
Sbjct 1136664 ATCGTCGAGCGCCCCCAGCACATGCTGATGCGCGTTGCTATTGGCATCCATGGCGAGGAC 1136605
Query 122961 ATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCGAGT 123020
||||| || | ||| || ||| || || |||| | | || || |||||
Sbjct 1136604 ATCGATGCAGCAATCGAGACCTACAATCTGCTGTCCGAGCGTTACTTTACCCACGCCTCG 1136545
Query 123021 CCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTCACC 123080
|| ||| |||| || || | ||| || || ||| | || || || || || | |||
Sbjct 1136544 CCAACTATGTTTGCGGCGGCCACTCAGCGTCCCCAGCTTTCGTCCTGCTTCCTGTTGACC 1136485
Query 123081 TTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGATTTCC 123140
|| |||||| ||||| || ||||| || || || | || || | |||||
Sbjct 1136484 ATGTCCGAAGATAGCATTGAGGGCATCTACGACACGCTGAAGCAGTGTGCCCTAATTTCA 1136425
Query 123141 AAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCG-GAAGC---CG 123196
|| | | ||| ||||| || ||||||||||| ||| ||||| |||| ||
Sbjct 1136424 AAGTCGGCCGGTGGCATCGGACTGAACGTGCACT--GTAT----CCGCGCGAAGGGAACG 1136371
Query 123197 --CATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAAT 123254
|||| | || |||| || | ||| || | | |||||||| || |||||
Sbjct 1136370 TACATCTCCGGTACGAACGGGATTTCGAACGGTCTGGTGCCGATGCTGCGCGTCTACAAC 1136311
Query 123255 AACGCCGTGCGGCACGTCGACCAGGGCGGCAAA---CGCAAAGGCGCGATGGCGATCTAT 123311
|| | | ||| ||||||| ||||| ||||| || || || | || ||||||
Sbjct 1136310 AATACGGCACGGTACGTCGATCAGGGTGGCAACAAGCGGCCTGGAGCATTCGCCATCTAT 1136251
Query 123312 CTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAAAACGCAACATGGGGGCG 123371
|| || |||||||| | |||| | | ||| ||| | || | || |||| || |
Sbjct 1136250 CTCGAGCCGTGGCATGGTGATATATTCGAGTTTCTCGATCTGAAGAAAAACACCGGCAAG 1136191
Query 123372 GAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCGA 123431
|| || || || || |||| ||||| | ||| |||| || |||| ||||
Sbjct 1136190 GAGGAGGTCCGCGCACGGGACATGTTTTACGCACTCTGGATACCGGACCTGTTCATGCAG 1136131
Query 123432 CGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGT-GTCCCGGCTTGAG 123490
|| || | | ||| ||||| || ||||| |||| || | ||||||| |
Sbjct 1136130 CGTGTGGAGGCGAACGAAATGTGGAGTCTGATGTG-CCCGCACGATTGTCCCGGGCTATC 1136072
Query 123491 CGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGGCAAACA 123550
||| | ||| | |||| || || ||||| || |||||| || || |
Sbjct 1136071 GGACACCTGGGGCGAAGAGTTCGAGAAGCTGTACACGGGGTACGAGAAAGAGGGT---CG 1136015
Query 123551 GGTTA---GTCAGGTTCCGGCACGTGATTTGTTCAAATTT---ATTATCGAAACACAAGT 123604
||| | ||||| ||| | ||| ||| ||| || |||||| | || ||
Sbjct 1136014 CTTTATGCGGCAGGTGAAGGCGCAGGATCTGTGG---TTTGCGATCATCGAATCGCAGGT 1135958
Query 123605 CGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAG 123664
|||||||| ||||||||||| ||||| || || ||||| | |||| || |||
Sbjct 1135957 GGAAACCGGCGTACCGTACATGCTGTACAAGGATGCTTGCAATCGTAAAAGTAACCAGCA 1135898
Query 123665 CAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAG--CGAT 123722
|| | || || || |||||| || | ||| | |||||| | || ||| |||
Sbjct 1135897 GAATATCGGCACCATCAAATGTTCCAACTTGTGCACTGAAATTGTAGAGTACTCGTCGAA 1135838
Query 123723 GCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAA--TCGTTGCGTCG--- 123777
| ||| | || || || || ||| |||| ||||| | |||| | ||| |
Sbjct 1135837 G--GATGAGGTAGCGGTATGCAATCTGGCCTCGATCGCCTTGAACATGTTTGTAAAGCAA 1135780
Query 123778 ---AAAACGGCGCTTTTAATTTCCAAACGCTCAAACGCATAACAAAAACTGTAGTAAAGA 123834
|||||| | | | ||| |||| ||| || | | || || ||| |
Sbjct 1135779 GACAAAACG----TATGACTTTGCAAA-GCTGAAGGAAGTCGCTAAGACCGTAACGCGCA 1135725
Query 123835 ATTTGAACAAAATTATCGATGTTAATTTTTATCCTTTG---GAGG--AAGCGCGTTTGTC 123889
|| |||||||||| || ||||| |||| ||||| || |||| |||||| ||
Sbjct 1135724 ATCTGAACAAAATCATTGATGTCAATTACTATCCCGTGCCGGAGGCTAAGCGC-----TC 1135670
Query 123890 TAATTTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAAT 123949
||| || ||||| ||| |||| | ||| | || || ||||||| ||||| | |
Sbjct 1135669 CAATATGCGCCACAGGCCGATCGGGATCGGCGTGCAGGGCATGGCCGATGCGTTCATCCT 1135610
Query 123950 GCTGCGCATGCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAAC 124009
| ||||| |||||||||||||| || || | ||| ||| ||||||| ||||||
Sbjct 1135609 GATGCGCTATCCGTACGAAAGCGAAGAGGCTCAAAAGCTAAATCAGCAAATATTCGAAAC 1135550
Query 124010 AATTTATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGA 124069
|| || |||||||| |||| |||||||| || | || | || |||||||
Sbjct 1135549 CATCTACTACGGCGCGCTGGAAGCGAGCTGTGAGTTGGCCGCTCGAGATGGTCCGTACGA 1135490
Query 124070 AAGTTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTAC 124129
| |||| |||||| |||| |||| || || ||||||||||| ||||||||
Sbjct 1135489 GACGTACGAGGGCAGTCCGGTGAGCAAGGGCATCTTGCAGTACGAGATGTGGAACAAGGA 1135430
Query 124130 ACCGACAAATTTGTGGGACTGGAGCGTTTTAAAACAACGCATATCGACGCACGGTTTGCG 124189
|||||| || ||||| ||||| || || || || || | | |||||| | ||
Sbjct 1135429 ACCGACGGATCTGTGGAACTGGGCCGAGTTGAAGGAAAAGATCGCCAAGCACGGCATTCG 1135370
Query 124190 TAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAA 124249
|| |||||| || |||| ||||||||||| |||| || |||||| | || |||||
Sbjct 1135369 CAATTCGCTGCTGTTGGCCCCGATGCCGACGGCTTCCACGGCACAAATTCTCGGCAACAA 1135310
Query 124250 CGAATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTAGCCGGCGATTT 124309
||||| |||||||||| ||| || | ||| | || ||| | | ||||| ||
Sbjct 1135309 TGAATCGTTCGAGCCGTACACGTCGAACGTTTACAATAGGCGCGTGCTGTCGGGCGAGTT 1135250
Query 124310 TCAAGTGATAAATCATCAT 124328
|| ||| | || ||||||
Sbjct 1135249 CCAGGTGGTGAACCATCAT 1135231
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451943755929160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |