Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21] 10,521 sequences; 224,417,174 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq7552 248 8e-61 >seq7552 Length=2500597 Score = 248 bits (274), Expect = 8e-61 Identities = 976/1519 (64%), Gaps = 56/1519 (4%) Strand=Plus/Minus Query 122841 TACAAATATTTTGGATACAAAACGTTAGAAAACGGATATTTGaaaaaaaTCGAGGAAAAG 122900 ||||| ||||| || | ||||| || ||| ||| ||| || ||| ||| ||| Sbjct 1136724 TACAACTATTTCGGCTTTAAAACCTTGGAACGATCATACTTGCTGAAGATCAAGGGAAAA 1136665 Query 122901 GTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGCGAC 122960 ||| ||| || || || ||||| |||||||| ||||| ||| | || || ||| Sbjct 1136664 ATCGTCGAGCGCCCCCAGCACATGCTGATGCGCGTTGCTATTGGCATCCATGGCGAGGAC 1136605 Query 122961 ATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCGAGT 123020 ||||| || | ||| || ||| || || |||| | | || || ||||| Sbjct 1136604 ATCGATGCAGCAATCGAGACCTACAATCTGCTGTCCGAGCGTTACTTTACCCACGCCTCG 1136545 Query 123021 CCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTCACC 123080 || ||| |||| || || | ||| || || ||| | || || || || || | ||| Sbjct 1136544 CCAACTATGTTTGCGGCGGCCACTCAGCGTCCCCAGCTTTCGTCCTGCTTCCTGTTGACC 1136485 Query 123081 TTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGATTTCC 123140 || |||||| ||||| || ||||| || || || | || || | ||||| Sbjct 1136484 ATGTCCGAAGATAGCATTGAGGGCATCTACGACACGCTGAAGCAGTGTGCCCTAATTTCA 1136425 Query 123141 AAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCG-GAAGC---CG 123196 || | | ||| ||||| || ||||||||||| ||| ||||| |||| || Sbjct 1136424 AAGTCGGCCGGTGGCATCGGACTGAACGTGCACT--GTAT----CCGCGCGAAGGGAACG 1136371 Query 123197 --CATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAAT 123254 |||| | || |||| || | ||| || | | |||||||| || ||||| Sbjct 1136370 TACATCTCCGGTACGAACGGGATTTCGAACGGTCTGGTGCCGATGCTGCGCGTCTACAAC 1136311 Query 123255 AACGCCGTGCGGCACGTCGACCAGGGCGGCAAA---CGCAAAGGCGCGATGGCGATCTAT 123311 || | | ||| ||||||| ||||| ||||| || || || | || |||||| Sbjct 1136310 AATACGGCACGGTACGTCGATCAGGGTGGCAACAAGCGGCCTGGAGCATTCGCCATCTAT 1136251 Query 123312 CTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAAAACGCAACATGGGGGCG 123371 || || |||||||| | |||| | | ||| ||| | || | || |||| || | Sbjct 1136250 CTCGAGCCGTGGCATGGTGATATATTCGAGTTTCTCGATCTGAAGAAAAACACCGGCAAG 1136191 Query 123372 GAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCGA 123431 || || || || || |||| ||||| | ||| |||| || |||| |||| Sbjct 1136190 GAGGAGGTCCGCGCACGGGACATGTTTTACGCACTCTGGATACCGGACCTGTTCATGCAG 1136131 Query 123432 CGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGT-GTCCCGGCTTGAG 123490 || || | | ||| ||||| || ||||| |||| || | ||||||| | Sbjct 1136130 CGTGTGGAGGCGAACGAAATGTGGAGTCTGATGTG-CCCGCACGATTGTCCCGGGCTATC 1136072 Query 123491 CGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGGCAAACA 123550 ||| | ||| | |||| || || ||||| || |||||| || || | Sbjct 1136071 GGACACCTGGGGCGAAGAGTTCGAGAAGCTGTACACGGGGTACGAGAAAGAGGGT---CG 1136015 Query 123551 GGTTA---GTCAGGTTCCGGCACGTGATTTGTTCAAATTT---ATTATCGAAACACAAGT 123604 ||| | ||||| ||| | ||| ||| ||| || |||||| | || || Sbjct 1136014 CTTTATGCGGCAGGTGAAGGCGCAGGATCTGTGG---TTTGCGATCATCGAATCGCAGGT 1135958 Query 123605 CGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAG 123664 |||||||| ||||||||||| ||||| || || ||||| | |||| || ||| Sbjct 1135957 GGAAACCGGCGTACCGTACATGCTGTACAAGGATGCTTGCAATCGTAAAAGTAACCAGCA 1135898 Query 123665 CAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAG--CGAT 123722 || | || || || |||||| || | ||| | |||||| | || ||| ||| Sbjct 1135897 GAATATCGGCACCATCAAATGTTCCAACTTGTGCACTGAAATTGTAGAGTACTCGTCGAA 1135838 Query 123723 GCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAA--TCGTTGCGTCG--- 123777 | ||| | || || || || ||| |||| ||||| | |||| | ||| | Sbjct 1135837 G--GATGAGGTAGCGGTATGCAATCTGGCCTCGATCGCCTTGAACATGTTTGTAAAGCAA 1135780 Query 123778 ---AAAACGGCGCTTTTAATTTCCAAACGCTCAAACGCATAACAAAAACTGTAGTAAAGA 123834 |||||| | | | ||| |||| ||| || | | || || ||| | Sbjct 1135779 GACAAAACG----TATGACTTTGCAAA-GCTGAAGGAAGTCGCTAAGACCGTAACGCGCA 1135725 Query 123835 ATTTGAACAAAATTATCGATGTTAATTTTTATCCTTTG---GAGG--AAGCGCGTTTGTC 123889 || |||||||||| || ||||| |||| ||||| || |||| |||||| || Sbjct 1135724 ATCTGAACAAAATCATTGATGTCAATTACTATCCCGTGCCGGAGGCTAAGCGC-----TC 1135670 Query 123890 TAATTTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAAT 123949 ||| || ||||| ||| |||| | ||| | || || ||||||| ||||| | | Sbjct 1135669 CAATATGCGCCACAGGCCGATCGGGATCGGCGTGCAGGGCATGGCCGATGCGTTCATCCT 1135610 Query 123950 GCTGCGCATGCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAAC 124009 | ||||| |||||||||||||| || || | ||| ||| ||||||| |||||| Sbjct 1135609 GATGCGCTATCCGTACGAAAGCGAAGAGGCTCAAAAGCTAAATCAGCAAATATTCGAAAC 1135550 Query 124010 AATTTATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGA 124069 || || |||||||| |||| |||||||| || | || | || ||||||| Sbjct 1135549 CATCTACTACGGCGCGCTGGAAGCGAGCTGTGAGTTGGCCGCTCGAGATGGTCCGTACGA 1135490 Query 124070 AAGTTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTAC 124129 | |||| |||||| |||| |||| || || ||||||||||| |||||||| Sbjct 1135489 GACGTACGAGGGCAGTCCGGTGAGCAAGGGCATCTTGCAGTACGAGATGTGGAACAAGGA 1135430 Query 124130 ACCGACAAATTTGTGGGACTGGAGCGTTTTAAAACAACGCATATCGACGCACGGTTTGCG 124189 |||||| || ||||| ||||| || || || || || | | |||||| | || Sbjct 1135429 ACCGACGGATCTGTGGAACTGGGCCGAGTTGAAGGAAAAGATCGCCAAGCACGGCATTCG 1135370 Query 124190 TAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAA 124249 || |||||| || |||| ||||||||||| |||| || |||||| | || ||||| Sbjct 1135369 CAATTCGCTGCTGTTGGCCCCGATGCCGACGGCTTCCACGGCACAAATTCTCGGCAACAA 1135310 Query 124250 CGAATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTAGCCGGCGATTT 124309 ||||| |||||||||| ||| || | ||| | || ||| | | ||||| || Sbjct 1135309 TGAATCGTTCGAGCCGTACACGTCGAACGTTTACAATAGGCGCGTGCTGTCGGGCGAGTT 1135250 Query 124310 TCAAGTGATAAATCATCAT 124328 || ||| | || |||||| Sbjct 1135249 CCAGGTGGTGAACCATCAT 1135231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451943755929160