Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21]
10,521 sequences; 224,417,174 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq7552 192 9e-44
seq7526 176 7e-39
>seq7552
Length=2500597
Score = 192 bits (212), Expect = 9e-44
Identities = 409/608 (67%), Gaps = 2/608 (0%)
Strand=Plus/Plus
Query 203833 CTTCGTCTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTA 203892
|||||||||||||||||| ||||| || || || ||||| ||| || | | |||||||||
Sbjct 1134883 CTTCGTCTTGTCCACCGTAAACTGGATCGCATTTACGGCCGGCTTGGTACGCAGATAGTA 1134942
Query 203893 CATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCAC 203952
|||||| || || | ||| ||| ||| || || | || || || | ||| ||||
Sbjct 1134943 CATGCCAGTTTTCAACCCCATCTTCCAGCCATAGAAATGGATCGACGTCAGCTTGCCATA 1135002
Query 203953 GTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGAT 204011
||| || || || | ||||||||| | || || || ||||| ||| ||||| ||||
Sbjct 1135003 GTTTGGCTCCGCGACGTGAATGTTGAACGATTGCGACTGATCGAT-AAACGCGCCACGAT 1135061
Query 204012 CTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTC 204071
|||||||||| ||||| || ||| ||| |||||||| ||||| ||| ||| || |
Sbjct 1135062 CTGCGGCCATTTTGATGCACGTTTTCACCGAGATCTCCCATACCGTTTTGTACAGATCGC 1135121
Query 204072 TGGTGTGTTGAGGCACATCTTCCCACGTCCTGATCGAGCCGTTGTCGGCCATCAGTCTCA 204131
| | || || | | | | | | |||||| || |||| || || | |
Sbjct 1135122 GAATTTCCTGCGGTATAGCCGCAATCTTTTGGATCGATCCATTGTTGGACAGAATTTCGT 1135181
Query 204132 TCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGA 204191
|| || | || |||||| |||| || ||| ||| ||| || || |||| |
Sbjct 1135182 TCTTCATGTCGAGATCCCACAGACCCATGTTGGTCAAATCCTGCAGAAGATGATGGTTCA 1135241
Query 204192 TGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGA 204251
| ||| || || || |||||||| | | || | | ||| ||| | || ||||
Sbjct 1135242 CCACCTGGAACTCGCCCGACAGCACGCGCCTATTGTAAACGTTCGACGTGTACGGCTCGA 1135301
Query 204252 ACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCA 204311
||| || |||||||||| ||| || || ||| ||||| ||||| || |||| ||||
Sbjct 1135302 ACGATTCATTGTTGCCGAGAATTTGTGCCGTGGAAGCCGTCGGCATCGGGGCCAACAGCA 1135361
Query 204312 GGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCATCG 204371
| || ||||| | |||| || || | | ||||| || ||||| ||
Sbjct 1135362 GCGAATTGCGAATGCCGTGCTTGGCGATCTTTTCCTTCAACTCGGCCCAGTTCCACAGAT 1135421
Query 204372 CACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCCCT 204431
| | |||| | | |||||| ||| |||| |||||||| | || || || |||||||
Sbjct 1135422 CCGTCGGTTCCTTGTTCCACATCTCGTACTGCAAGATGCCCTTGCTCACCGGACTGCCCT 1135481
Query 204432 TGTACGTC 204439
|||||||
Sbjct 1135482 CGTACGTC 1135489
Score = 109 bits (120), Expect = 9e-19
Identities = 337/514 (66%), Gaps = 8/514 (2%)
Strand=Plus/Plus
Query 204883 CTCCACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGA 204942
||| || || || ||||||||||| || || | || | || ||||||||||
Sbjct 1135849 CTCTACAATTTCAGTGCACAAGTTGGAACATTTGATGGTGCCGATATTCTGCTGGTTACT 1135908
Query 204943 CTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGATCG 205002
|| || || || | |||||||||| |||| |||| | ||| | |||| ||| |||
Sbjct 1135909 TTTACGATTGCAAGCATCCTTGTACAGCATGTACGGTACGCCGGTTTCCACCTGCGATTC 1135968
Query 205003 CAGAATGTGGGTCCACAATTCGCGAGCCTCCACTTGCTTCACGTACATC--CCTTGAGAC 205060
| || ||||| || | |||| ||| ||| || || | | || | |
Sbjct 1135969 GATGATCGCAAACCACAGATCCTGCGCCTTCACCTGCCGCA--TAAAGCGACCCTCTTTC 1136026
Query 205061 TCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGACAT 205120
||||| ||||||||| | | || || || | |||| ||||| |||||
Sbjct 1136027 TCGTACCCCGTGTACAGCTTCTCGAACTCTTCGCCCCAGGTGTCCGATAGCCCGGGACAA 1136086
Query 205121 TTTTTGGGACACATCAGAGACCACATCT-GATCGTCTTTCACCCTCTCCATAAACAGGTC 205179
| | || ||||||||| |||||| | | ||| || ||| | || ||| ||||||||
Sbjct 1136087 TCGTGCGGGCACATCAGACTCCACATTTCGTTCGCCTC-CACACGCTGCATGAACAGGTC 1136145
Query 205180 GCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCTT 205239
||||| || ||||||||| || || || | | | || | || ||| ||
Sbjct 1136146 CGGTATCCAGAGTGCGTAAAACATGTCCCGTGCGCGGACCTCCTCCTTGCCGGTGTTTTT 1136205
Query 205240 TTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCCATTG 205298
|||| || || || || | || || | ||||||||||| | | | ||| | ||
Sbjct 1136206 CTTCAGATCGAGA-AACTCGAATATATCACCATGCCACGGCTCGAGATAGATGGCGAATG 1136264
Query 205299 CGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGCA 205358
| || |||| |||||| |||||||| || || || | | | |||| | || ||||
Sbjct 1136265 CTCCAGGCCGCTTGTTGCCACCCTGATCGACGTACCGTGCCGTATTGTTGTAGACGCGCA 1136324
Query 205359 GCATCGGCACCAGACCGTTGGCGGTCCCGTTCGT 205392
||||||||||||||||||| | ||||||||||
Sbjct 1136325 GCATCGGCACCAGACCGTTCGAAATCCCGTTCGT 1136358
>seq7526
Length=6110091
Score = 176 bits (194), Expect = 7e-39
Identities = 245/340 (72%), Gaps = 5/340 (1%)
Strand=Plus/Plus
Query 159745 CAGCAACCTGTCTGCCACAAATTCGATGTAGCTAC-ACATCTGCTCACAGTTGATCCCCA 159803
|||||| | || |||||||| || ||||| || | ||||| | |||||||| || ||||
Sbjct 4672961 CAGCAAACGATCGGCCACAAACTCAATGTA-CTGCGACATCAGATCACAGTTCATGCCCA 4673019
Query 159804 GCAGCCTAACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCA 159863
||| || || || || | || ||| ||||||| ||| ||| |||||| ||| |
Sbjct 4673020 GCATATCCACCGGCAGTGCCTTCGTCAGGAACTCCTGCTCGATCAGGACCGCATCGCGGA 4673079
Query 159864 CAATCTGCGAGACACGTTCGTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGC 159923
|||| || || || || | | |||||| || | | | ||| |||| ||||
Sbjct 4673080 TGATCTCCGTCACGCGCTCCTTCGACGGCTTCTGCACCA---GATACTTGAACATCAGGC 4673136
Query 159924 ACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGC 159983
| ||||||||||||||||| || ||||| || ||||| | |||||| || | | |||| |
Sbjct 4673137 AGGCAAAGTCGCAGTGCAGCCCTTCGTCGCGCGAGATCAGCTCGTTCGAGAAGGTGAGTC 4673196
Query 159984 CCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGA 160043
||||||| | |||||| || ||||| || || || || || |||||| || ||||
Sbjct 4673197 CCGGCATCAGGCCACGCTTCTTCAGCCAGAAGATCGCGGCGAAGCTACCGCTGAAGAAGA 4673256
Query 160044 TCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAA 160083
| ||||| || || || || ||||||| || ||| |||||
Sbjct 4673257 TACCCTCAACCGCAGCGAATGCCACGACCCGCTCGCCAAA 4673296
Score = 116 bits (128), Expect = 6e-21
Identities = 177/249 (71%), Gaps = 5/249 (2%)
Strand=Plus/Plus
Query 160205 ATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAA 160264
|||||| ||||||||| || |||||||||||| || || ||||| ||| ||||||
Sbjct 4673518 ATCAGCAGCGAGTACATCTCGCTGTGCACATTTTCCATCGCAATCTGGAAGCCGTAGAAG 4673577
Query 160265 TATGTCGCCTCCAGATACTGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACC 160324
| ||||||| | |||||||||||| |||| | || ||||||| | || ||
Sbjct 4673578 CAGCGCGCCTCCGTAACCTGCACCTCCTGGCTGAAGCGTTCCACCAGATTCTCGTTCACG 4673637
Query 160325 AACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTG 160384
| ||||||| || |||||||| |||| |||||| || ||||| || | ||| || |
Sbjct 4673638 ATACCGTCGGACGCGGCAAAGAAGGCCAGCACGTGGGAAATGAAGTGGCGTTCG-CTCGG 4673696
Query 160385 TTGAGTC-TCTTTTCCCAGTGTGTCACGTCTTGGGCCAAATCAACCTCTTCCGCGCTCCA 160443
|| || | ||||||| ||| || | || || ||||||||||||| | ||||
Sbjct 4673697 TT---TCAGCGACTCCCAGTCCTTCATATCCTTGGACAGATCAACCTCTTCCACCGTCCA 4673753
Query 160444 ATTGGCAGC 160452
| || |||
Sbjct 4673754 AAAGGAAGC 4673762
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795050627151760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |