Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21] 10,521 sequences; 224,417,174 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq7552 192 9e-44 seq7526 176 7e-39 >seq7552 Length=2500597 Score = 192 bits (212), Expect = 9e-44 Identities = 409/608 (67%), Gaps = 2/608 (0%) Strand=Plus/Plus Query 203833 CTTCGTCTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTA 203892 |||||||||||||||||| ||||| || || || ||||| ||| || | | ||||||||| Sbjct 1134883 CTTCGTCTTGTCCACCGTAAACTGGATCGCATTTACGGCCGGCTTGGTACGCAGATAGTA 1134942 Query 203893 CATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCAC 203952 |||||| || || | ||| ||| ||| || || | || || || | ||| |||| Sbjct 1134943 CATGCCAGTTTTCAACCCCATCTTCCAGCCATAGAAATGGATCGACGTCAGCTTGCCATA 1135002 Query 203953 GTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGAT 204011 ||| || || || | ||||||||| | || || || ||||| ||| ||||| |||| Sbjct 1135003 GTTTGGCTCCGCGACGTGAATGTTGAACGATTGCGACTGATCGAT-AAACGCGCCACGAT 1135061 Query 204012 CTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTC 204071 |||||||||| ||||| || ||| ||| |||||||| ||||| ||| ||| || | Sbjct 1135062 CTGCGGCCATTTTGATGCACGTTTTCACCGAGATCTCCCATACCGTTTTGTACAGATCGC 1135121 Query 204072 TGGTGTGTTGAGGCACATCTTCCCACGTCCTGATCGAGCCGTTGTCGGCCATCAGTCTCA 204131 | | || || | | | | | | |||||| || |||| || || | | Sbjct 1135122 GAATTTCCTGCGGTATAGCCGCAATCTTTTGGATCGATCCATTGTTGGACAGAATTTCGT 1135181 Query 204132 TCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGA 204191 || || | || |||||| |||| || ||| ||| ||| || || |||| | Sbjct 1135182 TCTTCATGTCGAGATCCCACAGACCCATGTTGGTCAAATCCTGCAGAAGATGATGGTTCA 1135241 Query 204192 TGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGA 204251 | ||| || || || |||||||| | | || | | ||| ||| | || |||| Sbjct 1135242 CCACCTGGAACTCGCCCGACAGCACGCGCCTATTGTAAACGTTCGACGTGTACGGCTCGA 1135301 Query 204252 ACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCA 204311 ||| || |||||||||| ||| || || ||| ||||| ||||| || |||| |||| Sbjct 1135302 ACGATTCATTGTTGCCGAGAATTTGTGCCGTGGAAGCCGTCGGCATCGGGGCCAACAGCA 1135361 Query 204312 GGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCATCG 204371 | || ||||| | |||| || || | | ||||| || ||||| || Sbjct 1135362 GCGAATTGCGAATGCCGTGCTTGGCGATCTTTTCCTTCAACTCGGCCCAGTTCCACAGAT 1135421 Query 204372 CACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCCCT 204431 | | |||| | | |||||| ||| |||| |||||||| | || || || ||||||| Sbjct 1135422 CCGTCGGTTCCTTGTTCCACATCTCGTACTGCAAGATGCCCTTGCTCACCGGACTGCCCT 1135481 Query 204432 TGTACGTC 204439 ||||||| Sbjct 1135482 CGTACGTC 1135489 Score = 109 bits (120), Expect = 9e-19 Identities = 337/514 (66%), Gaps = 8/514 (2%) Strand=Plus/Plus Query 204883 CTCCACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGA 204942 ||| || || || ||||||||||| || || | || | || |||||||||| Sbjct 1135849 CTCTACAATTTCAGTGCACAAGTTGGAACATTTGATGGTGCCGATATTCTGCTGGTTACT 1135908 Query 204943 CTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGATCG 205002 || || || || | |||||||||| |||| |||| | ||| | |||| ||| ||| Sbjct 1135909 TTTACGATTGCAAGCATCCTTGTACAGCATGTACGGTACGCCGGTTTCCACCTGCGATTC 1135968 Query 205003 CAGAATGTGGGTCCACAATTCGCGAGCCTCCACTTGCTTCACGTACATC--CCTTGAGAC 205060 | || ||||| || | |||| ||| ||| || || | | || | | Sbjct 1135969 GATGATCGCAAACCACAGATCCTGCGCCTTCACCTGCCGCA--TAAAGCGACCCTCTTTC 1136026 Query 205061 TCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGACAT 205120 ||||| ||||||||| | | || || || | |||| ||||| ||||| Sbjct 1136027 TCGTACCCCGTGTACAGCTTCTCGAACTCTTCGCCCCAGGTGTCCGATAGCCCGGGACAA 1136086 Query 205121 TTTTTGGGACACATCAGAGACCACATCT-GATCGTCTTTCACCCTCTCCATAAACAGGTC 205179 | | || ||||||||| |||||| | | ||| || ||| | || ||| |||||||| Sbjct 1136087 TCGTGCGGGCACATCAGACTCCACATTTCGTTCGCCTC-CACACGCTGCATGAACAGGTC 1136145 Query 205180 GCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCTT 205239 ||||| || ||||||||| || || || | | | || | || ||| || Sbjct 1136146 CGGTATCCAGAGTGCGTAAAACATGTCCCGTGCGCGGACCTCCTCCTTGCCGGTGTTTTT 1136205 Query 205240 TTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCCATTG 205298 |||| || || || || | || || | ||||||||||| | | | ||| | || Sbjct 1136206 CTTCAGATCGAGA-AACTCGAATATATCACCATGCCACGGCTCGAGATAGATGGCGAATG 1136264 Query 205299 CGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGCA 205358 | || |||| |||||| |||||||| || || || | | | |||| | || |||| Sbjct 1136265 CTCCAGGCCGCTTGTTGCCACCCTGATCGACGTACCGTGCCGTATTGTTGTAGACGCGCA 1136324 Query 205359 GCATCGGCACCAGACCGTTGGCGGTCCCGTTCGT 205392 ||||||||||||||||||| | |||||||||| Sbjct 1136325 GCATCGGCACCAGACCGTTCGAAATCCCGTTCGT 1136358 >seq7526 Length=6110091 Score = 176 bits (194), Expect = 7e-39 Identities = 245/340 (72%), Gaps = 5/340 (1%) Strand=Plus/Plus Query 159745 CAGCAACCTGTCTGCCACAAATTCGATGTAGCTAC-ACATCTGCTCACAGTTGATCCCCA 159803 |||||| | || |||||||| || ||||| || | ||||| | |||||||| || |||| Sbjct 4672961 CAGCAAACGATCGGCCACAAACTCAATGTA-CTGCGACATCAGATCACAGTTCATGCCCA 4673019 Query 159804 GCAGCCTAACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCA 159863 ||| || || || || | || ||| ||||||| ||| ||| |||||| ||| | Sbjct 4673020 GCATATCCACCGGCAGTGCCTTCGTCAGGAACTCCTGCTCGATCAGGACCGCATCGCGGA 4673079 Query 159864 CAATCTGCGAGACACGTTCGTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGC 159923 |||| || || || || | | |||||| || | | | ||| |||| |||| Sbjct 4673080 TGATCTCCGTCACGCGCTCCTTCGACGGCTTCTGCACCA---GATACTTGAACATCAGGC 4673136 Query 159924 ACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGC 159983 | ||||||||||||||||| || ||||| || ||||| | |||||| || | | |||| | Sbjct 4673137 AGGCAAAGTCGCAGTGCAGCCCTTCGTCGCGCGAGATCAGCTCGTTCGAGAAGGTGAGTC 4673196 Query 159984 CCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGA 160043 ||||||| | |||||| || ||||| || || || || || |||||| || |||| Sbjct 4673197 CCGGCATCAGGCCACGCTTCTTCAGCCAGAAGATCGCGGCGAAGCTACCGCTGAAGAAGA 4673256 Query 160044 TCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAA 160083 | ||||| || || || || ||||||| || ||| ||||| Sbjct 4673257 TACCCTCAACCGCAGCGAATGCCACGACCCGCTCGCCAAA 4673296 Score = 116 bits (128), Expect = 6e-21 Identities = 177/249 (71%), Gaps = 5/249 (2%) Strand=Plus/Plus Query 160205 ATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAA 160264 |||||| ||||||||| || |||||||||||| || || ||||| ||| |||||| Sbjct 4673518 ATCAGCAGCGAGTACATCTCGCTGTGCACATTTTCCATCGCAATCTGGAAGCCGTAGAAG 4673577 Query 160265 TATGTCGCCTCCAGATACTGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACC 160324 | ||||||| | |||||||||||| |||| | || ||||||| | || || Sbjct 4673578 CAGCGCGCCTCCGTAACCTGCACCTCCTGGCTGAAGCGTTCCACCAGATTCTCGTTCACG 4673637 Query 160325 AACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTG 160384 | ||||||| || |||||||| |||| |||||| || ||||| || | ||| || | Sbjct 4673638 ATACCGTCGGACGCGGCAAAGAAGGCCAGCACGTGGGAAATGAAGTGGCGTTCG-CTCGG 4673696 Query 160385 TTGAGTC-TCTTTTCCCAGTGTGTCACGTCTTGGGCCAAATCAACCTCTTCCGCGCTCCA 160443 || || | ||||||| ||| || | || || ||||||||||||| | |||| Sbjct 4673697 TT---TCAGCGACTCCCAGTCCTTCATATCCTTGGACAGATCAACCTCTTCCACCGTCCA 4673753 Query 160444 ATTGGCAGC 160452 | || ||| Sbjct 4673754 AAAGGAAGC 4673762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795050627151760