Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20coluzzii_20[genbank_20GCA_5F000150765.1_202008-04-21]
10,521 sequences; 224,417,174 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq7526 250 2e-61
seq7521 131 2e-25
seq7517 118 1e-21
>seq7526
Length=6110091
Score = 250 bits (276), Expect = 2e-61
Identities = 312/428 (73%), Gaps = 0/428 (0%)
Strand=Plus/Plus
Query 132711 CAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATT 132770
||| |||| |||| | |||||||| ||||| ||||| |||||||| || || ||
Sbjct 4672952 CAGCTCGAGCAGCAAACGATCGGCCACAAACTCAATGTACTGCGACATCAGATCACAGTT 4673011
Query 132771 AAGTCCCAGCAGACGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGC 132830
| ||||||| | ||||||||| || | || || || |||||||| ||||||
Sbjct 4673012 CATGCCCAGCATATCCACCGGCAGTGCCTTCGTCAGGAACTCCTGCTCGATCAGGACCGC 4673071
Query 132831 GTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACAT 132890
||| || ||| ||| | |||||| || |||| ||||||| || |||||||||
Sbjct 4673072 ATCGCGGATGATCTCCGTCACGCGCTCCTTCGACGGCTTCTGCACCAGATACTTGAACAT 4673131
Query 132891 CAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGT 132950
|| ||| ||||||||||| |||| || ||||| | || || || ||||| ||| ||
Sbjct 4673132 CAGGCAGGCAAAGTCGCAGTGCAGCCCTTCGTCGCGCGAGATCAGCTCGTTCGAGAAGGT 4673191
Query 132951 CAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAA 133010
| || ||||| ||||| || || || ||||| || || |||||||| || || ||
Sbjct 4673192 GAGTCCCGGCATCAGGCCACGCTTCTTCAGCCAGAAGATCGCGGCGAAGCTACCGCTGAA 4673251
Query 133011 GAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCT 133070
||||| ||||| || || ||||| ||||| | |||||||| || |||| | |||||
Sbjct 4673252 GAAGATACCCTCAACCGCAGCGAATGCCACGACCCGCTCGCCAAAGTTGGCCTTCTTGCT 4673311
Query 133071 GGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGC 133130
| ||||||| ||||||||| || ||||| || |||||||||| ||||||||||||
Sbjct 4673312 CGAGATCCAGTTCAGCGCCCAGTCCGCCTTCCGCTTCACGCACGGCAGCGTTTCGATGGC 4673371
Query 133131 GTTCAACA 133138
|| ||||
Sbjct 4673372 ATTGAACA 4673379
Score = 176 bits (194), Expect = 5e-39
Identities = 209/281 (74%), Gaps = 2/281 (1%)
Strand=Plus/Plus
Query 133148 TCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGT 133207
|||||| |||| || | ||| |||||||| || ||| ||||| || ||| || |
Sbjct 4673489 TCTCTTTCGAGTCGCGGATGTACGTGTCGATCAGCAGCGAGTACATCTCGCTGTGCACAT 4673548
Query 133208 TCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAG 133267
| ||||| || || || |||||||| ||||| |||||||| |||||||| || ||
Sbjct 4673549 TTTCCATCGCAATCTGGAAGCCGTAGAAGCAGCGCGCCTCCGTAACCTGCACCTCCTGGC 4673608
Query 133268 CGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCA 133327
||| || || |||||||| ||||| ||||| |||||| ||||| || ||||||||||
Sbjct 4673609 TGAAGCGTTCCACCAGATTCTCGTTCACGATACCGTCGGACGCGGCAAAGAAGGCCAGCA 4673668
Query 133328 CGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCG-CTCCCAGTCGCGCGTGTCCTTG 133386
|||| ||||| ||||| ||| | ||| |||| ||||||||| | | ||||||
Sbjct 4673669 CGTGGGAAATGAAGTGGCGTTCGCT-CGGTTTCAGCGACTCCCAGTCCTTCATATCCTTG 4673727
Query 133387 GACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGC 133427
||||| || ||||| || || |||||||| || || || ||
Sbjct 4673728 GACAGATCAACCTCTTCCACCGTCCAAAAGGAAGCTTCCGC 4673768
>seq7521
Length=12184106
Score = 131 bits (144), Expect = 2e-25
Identities = 162/219 (74%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
|| ||||| || ||||| ||||| |||||||| || ||||| ||| | || |||||| ||
Sbjct 8321115 AAGATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGCCC 8321174
Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GA 38359
| || | | | | | || | || |||| ||||| || ||||| |||||| ||
Sbjct 8321175 TCGGATACGATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAAGGAAT-CCCGCCAGA 8321233
Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419
|| ||||| || || | ||| ||||| |||||||| || | ||||| || ||||||
Sbjct 8321234 TCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACGCTGTCCGACTA 8321293
Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
||||||||| ||||| |||| || ||| ||||||||||
Sbjct 8321294 CAACATCCAGAAGGAGTCGACCCTTCATCTGGTGCTGCG 8321332
Score = 116 bits (128), Expect = 4e-21
Identities = 142/194 (73%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299
||| ||||| || ||||| ||||| ||||| ||||| |||||||| | || |||||| |
Sbjct 9381349 AAACATGCAGATTTTCGTGAAAACACTCACCGGCAAGACCATCACACTTGAGGTCGAGCC 9381290
Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359
| |||| | | | | || | ||| |||| ||||| || || |||||| | ||
Sbjct 9381289 TTCGGACACGATCGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGCATTCCCCCAGA 9381230
Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419
|| ||||| || || | ||| ||||| |||||||| || | ||||| ||| ||||||
Sbjct 9381229 TCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACTCTCTCCGACTA 9381170
Query 38420 CAACATCCAAAAGG 38433
|||||| || ||||
Sbjct 9381169 CAACATTCAGAAGG 9381156
>seq7517
Length=11427604
Score = 118 bits (130), Expect = 1e-21
Identities = 165/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || ||||| || ||||| |||||||| | || |||||| | |
Sbjct 2898284 ATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACGCTGGAGGTCGAGCCGTCG 2898343
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | |||| | || | || |||| ||||| ||||| ||||| | || ||
Sbjct 2898344 GACACGATCGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCAGATCA 2898402
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| | || | ||| || || |||||||| |||| || || || |||||||||
Sbjct 2898403 GCAGCGTTTGATCTTCGCCGGTAAGCAGCTGGAAGACGGACGTACTCTGTCCGACTACAA 2898462
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
|||||| ||||| |||| |||| ||||| || ||| || | || |||
Sbjct 2898463 CATCCAGAAGGAGTCGACCTTGCACTTGGTCCTCCGTCTGCGCGGTGGC 2898511
Score = 118 bits (130), Expect = 1e-21
Identities = 165/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || ||||| || ||||| |||||||| | || |||||| | |
Sbjct 2898512 ATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACGCTGGAGGTCGAGCCGTCG 2898571
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | |||| | || | || |||| ||||| ||||| ||||| | || ||
Sbjct 2898572 GACACGATCGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCAGATCA 2898630
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| | || | ||| || || |||||||| |||| || ||| | |||||||||
Sbjct 2898631 GCAGCGTTTGATCTTCGCCGGTAAGCAGCTGGAAGACGGACGTACCTTGTCCGACTACAA 2898690
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
|||||| ||||| |||| |||| ||||| || ||| || | || |||
Sbjct 2898691 CATCCAGAAGGAGTCGACCTTGCACTTGGTCCTCCGTCTGCGCGGTGGC 2898739
Score = 102 bits (112), Expect = 8e-17
Identities = 143/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || ||||| || ||||| |||||||| | || |||||| | |
Sbjct 2898740 ATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACGCTGGAGGTCGAGCCGTCG 2898799
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | |||| | || | || |||| ||||| ||||| ||||| | || ||
Sbjct 2898800 GACACGATCGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCAGATCA 2898858
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| | || | ||| || || |||||||| |||| || ||| | |||||||||
Sbjct 2898859 GCAGCGTTTGATCTTCGCCGGTAAGCAGCTGGAAGACGGACGTACCTTGTCCGACTACAA 2898918
Query 38423 CATCCAAAAGGAAGCGAC 38440
|||||| ||||| ||||
Sbjct 2898919 CATCCAGAAGGAGTCGAC 2898936
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500107021024640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |